| Literature DB >> 36072973 |
Hexin Ma1,2, Guofang Wang2,3, Xiaomeng Guo1,2, Yao Yao4, Chunshen Li1,2, Xibo Li1,2, Mingzhe Xin1,2, Xiaohui Xu1,2, Shilong Zhang1,2, Zhi Sun5,6, Hongyu Zhao1,2.
Abstract
Objective: Oral lichen planus (OLP) is the most common potentially malignant disorder of the oral cavity. This study aimed to investigate the mechanism of action of Cordyceps sinensis in the treatment of OLP and provides a theoretical support for improving current treatment regimens for OLP.Entities:
Year: 2022 PMID: 36072973 PMCID: PMC9444403 DOI: 10.1155/2022/3156785
Source DB: PubMed Journal: J Oncol ISSN: 1687-8450 Impact factor: 4.501
Figure 1Diagram of the research workflow.
The active ingredients of Cordyceps sinensis.
| No. | Molecule name | OB (%) | DL | No | Molecule name | OB (%) | DL |
|---|---|---|---|---|---|---|---|
| C1 | Arachidonic acid | 45.57 | 0.20 | C14 | Isotalatizidine | 50.82 | 0.73 |
| C2 | Linoleyl acetate | 42.10 | 0.20 | C15 | Neokadsuranic acid C | 35.40 | 0.85 |
| C3 | Beta-sitosterol | 36.91 | 0.75 | C16 | Karakoline | 51.73 | 0.73 |
| C4 | Peroxyergosterol | 44.39 | 0.82 | C17 | Vilmorrianine C | 33.96 | 0.22 |
| C5 | Cerevisterol | 39.52 | 0.77 | C18 | Styrone | 38.35 | 0.22 |
| C6 | Cholesteryl palmitate | 31.05 | 0.45 | C19 | Deltoin | 46.69 | 0.37 |
| C7 | CLR | 37.87 | 0.68 | C20 | Karanjin | 69.56 | 0.34 |
| C8 | Hypaconitine | 31.39 | 0.26 | C21 | Crassicauline A | 34.13 | 0.21 |
| C9 | Berberine | 36.86 | 0.78 | C22 | MTL | 17.73 | 0.03 |
| C10 | Deoxyaconitine | 30.96 | 0.24 | C23 | Adenosine | 15.98 | 0.18 |
| C11 | Ignavine | 84.08 | 0.25 | C24 | Ergosterol | 14.29 | 0.72 |
| C12 | 3-Acetylaconitine | 37.05 | 0.20 | C25 | Inosine | 11.17 | 0.18 |
| C13 | Deoxyandrographolide | 56.30 | 0.31 | C26 | Cordycepin | 38.44 | 0.16 |
Figure 2Network of “component-target” in Cordyceps sinensis. The target is represented by the rectangle, while the component is symbolized by the orange diamond. The expected targets are represented by green rectangles, while the known targets are represented by yellow rectangles, and purple represents targets that are common to both predicted and known.
Figure 3PPI network of OLP targets, the diamond represents the target, the colors range from yellow to blue, the sizes range from large to tiny, and the transparency range from low to high represents the Degree values ranging from large to small.
Figure 4The Venn diagram of Cordyceps sinensis and OLP targets.
Figure 5PPI network for conceivable therapeutic targets. Proteins are shown by the circles, while the connections between proteins are shown by the lines. The node degree values are shown as tiny to big circles and bright to dark hues. Lines that go from thin to thick show the transition from tiny to enormous.
Topological parameters of key target sites.
| Target | Degree | Closeness | Betweenness | Target | Degree | Closeness | Betweenness |
|---|---|---|---|---|---|---|---|
| AKT1 | 38 | 51 | 473 | CASP3 | 26 | 45 | 102 |
| TNF | 36 | 51 | 418 | HRAS | 24 | 44 | 105 |
| TP53 | 34 | 50 | 335 | IGF1 | 24 | 44 | 99 |
| JUN | 33 | 49 | 398 | INS | 23 | 44 | 152 |
| IL-6 | 32 | 49 | 149 | RELA | 22 | 43 | 103 |
| VEGFA | 30 | 48 | 138 | ESR1 | 21 | 42 | 110 |
| EGFR | 30 | 48 | 196 | TGFB1 | 20 | 42 | 275 |
| IL1B | 28 | 47 | 108 | IL4 | 18 | 41 | 190 |
| EGF | 26 | 45 | 95 | PTGS2 | 15 | 40 | 123 |
| ALB | 26 | 45 | 233 |
Figure 6GO enrichment outcomes. The top 10 GO items in each category are shown by the horizontal axis, while the number of genes enriched in each entry is represented by the vertical axis.
Figure 7KEGG pathway enrichment of 67 putative medicinal targets. The size of the circle shows the number of genes, and the color from purple to red represents the decreasing p value. The horizontal axis represents the ratio of enriched genes to the total number of genes; the vertical axis represents the top 20 pathways chosen using the p < 0.05 criterion.
Docking parameters and results.
| No. | Target | PDB ID | Compound | Minimum binding energy (kcal/mol) |
|---|---|---|---|---|
|
| AKT1 | 1h10 | Adenosine | −6.10 |
|
| AKT1 | 1h10 | Arachidonic acid | −4.30 |
|
| TNF | 5uui | Berberine | −6.00 |
|
| TP53 | 1yc5 | Berberine | −6.20 |
|
| JUN | 6y3v | Beta-sitosterol | −6.10 |
|
| JUN | 6y3v | Cordycepin | −5.30 |
|
| JUN | 6y3v | Berberine | −5.30 |
|
| IL-6 | 4ni7 | Berberine | −6.80 |
Figure 8Molecular docking of the five core targets with their active ingredients. (a) The binding mode of AKT1 complexed with adenosine. (b) The binding mode of AKT1 complexed with arachidonic acid. (c) The binding mode of TNF complexed with berberine. (d) The binding mode of TP53 complexed with berberine. (e) The binding mode of JUN complexed with beta-sitosterol. (f) The binding mode of JUN complexed with cordycepin. (g) The binding mode of JUN complexed with berberine. (h) The binding mode of IL-6 complexed with berberine.