| Literature DB >> 36072141 |
Qiang-Qiang Lu1, Xin-Wei Shi1, Ya-Fu Zhou1, Xin-Ai Cui1, Hong Wang1.
Abstract
The structure of the title com-pound, C17H20O4 [systematic name: (1aS,3aR,4aS,5aR)-15-(acet-oxy)linden-7(11),8-trieno-12,8-lactone or (4aR,5S,5aR,6aS,6bR)-5-(acet-oxy-meth-yl)-4a,5,5a,6,6a,6b-hexa-hydro-3,6b-di-methyl-cyclo-propa[2,3]indeno-[5,6-b]furan-2(4H)-one, ent-chloranthalactone C], a natural product iso-lated from the whole plant Chloranthus japonicus Sieb., is a typical lin-den-ane-type sesquiterpenoid. The mol-ecule com-prises a bi-cyclo-[3.1.0]hexane ring (A/B system) bearing an acetoxymethyl (C-4) group, a bi-cyclo-[4.3.0]nonane ring (B/C system) containing a double bond (C-8/9) and a chiral quaternary carbon (C-10), and a 7(11)-en-12,8-olide structural moiety on the cyclo-hexan-8-ene (C ring). In the tetra-cyclic skeleton, the 1,3-cyclo-propane ring has a β-con-figuration, and atoms H-5 and H3-14 have α- and β-orientations, respectively. In the crystal, the mol-ecules are assembled into a two-dimensional network by weak O⋯H/H⋯O inter-actions. Hirshfeld surface analysis illustrates that the greatest contributions are from H⋯H (55.2%), O⋯H/H⋯O (34.6%) and C⋯H/H⋯C (8.9%) contacts. © Lu et al. 2022.Entities:
Keywords: Chloranthus japonicus; crystal structure; polycyclic framework; sesquiterpenes
Year: 2022 PMID: 36072141 PMCID: PMC9431784 DOI: 10.1107/S2056989022004625
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Figure 2The packing of molecules in the crystal structure of the title compound, viewed along the c direction (C—H⋯O hydrogen bonds are shown as green dashed lines).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C8—H8 | 0.97 | 2.81 | 3.481 (5) | 127 |
| C11—H11⋯O3ii | 0.98 | 2.54 | 3.497 (5) | 167 |
| C13—H13 | 0.96 | 2.60 | 3.499 (5) | 157 |
| C13—H13 | 0.96 | 2.61 | 3.530 (6) | 160 |
| C14—H14 | 0.96 | 2.76 | 3.530 (5) | 138 |
| C17—H17 | 0.96 | 2.86 | 3.478 (5) | 124 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 3Front view of the 3D Hirshfeld surface of the title compound mapped over d norm in the range from −0.1253 to 1.4046 arbitrary units.
Figure 4Hirshfeld surface mapped over d norm for the molecules of the title compound showing: (a) H⋯O/O⋯H contacts (front), (b) H⋯O/O⋯H contacts (profile), (c) H⋯O/O⋯H contacts (back) and (d) C⋯H/H⋯C contacts (back). H atoms not involved in bonding have been omitted for clarity.
Figure 5The 2D fingerprint plots of the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) O⋯H/H⋯O and (d) C⋯H/H⋯C interactions. The d e and d i values represent the distances (in Å) from a point on the Hirshfeld surface to the nearest atoms inside and outside the surface, respectively.
Experimental details
| Crystal data | |
| Chemical formula | C17H20O4 |
|
| 288.33 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 296 |
|
| 6.7641 (3), 6.9254 (3), 31.4538 (14) |
|
| 1473.42 (11) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.20 × 0.20 × 0.20 |
| Data collection | |
| Diffractometer | Bruker SMART CCD |
| Absorption correction | Multi-scan ( |
| No. of measured, independent and observed [ | 12659, 2576, 1857 |
|
| 0.057 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.051, 0.117, 1.05 |
| No. of reflections | 2576 |
| No. of parameters | 193 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.21 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.10 (8) |
Computer programs: SMART and SAINT (Bruker, 2002 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸) and publCIF (Westrip, 2010 ▸).
| C17H20O4 | |
| Mo | |
| Orthorhombic, | Cell parameters from 3545 reflections |
| θ = 2.6–20.7° | |
| µ = 0.09 mm−1 | |
| Block, colorless | |
| 0.20 × 0.20 × 0.20 mm | |
| Bruker SMART CCD diffractometer | 1857 reflections with |
| phi and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | θmax = 25.0°, θmin = 2.6° |
| 12659 measured reflections | |
| 2576 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.30 e Å−3 | |
| 2576 reflections | Δρmin = −0.21 e Å−3 |
| 193 parameters | Absolute structure: Flack |
| 0 restraints | Absolute structure parameter: 0.10 (8) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.1658 (5) | 0.5144 (4) | 0.54793 (8) | 0.0745 (9) | |
| O2 | 0.1329 (4) | 0.5303 (4) | 0.47683 (7) | 0.0537 (7) | |
| O3 | 0.9151 (4) | 0.1520 (4) | 0.31668 (8) | 0.0566 (8) | |
| O4 | 0.9315 (6) | −0.1600 (5) | 0.32844 (14) | 0.1261 (18) | |
| C1 | 0.2446 (6) | 0.5140 (6) | 0.51366 (12) | 0.0536 (10) | |
| C2 | 0.4539 (6) | 0.4960 (5) | 0.50214 (10) | 0.0480 (9) | |
| C3 | 0.4648 (5) | 0.4991 (5) | 0.45952 (10) | 0.0418 (8) | |
| C4 | 0.2650 (5) | 0.5215 (5) | 0.44282 (11) | 0.0442 (9) | |
| C5 | 0.2143 (5) | 0.5386 (5) | 0.40250 (11) | 0.0447 (10) | |
| H5 | 0.0829 | 0.5495 | 0.3942 | 0.054* | |
| C6 | 0.3810 (5) | 0.5396 (5) | 0.37059 (10) | 0.0389 (9) | |
| C7 | 0.5465 (5) | 0.4057 (5) | 0.38746 (10) | 0.0387 (9) | |
| H7 | 0.4802 | 0.2839 | 0.3944 | 0.046* | |
| C8 | 0.6345 (5) | 0.4765 (6) | 0.42937 (10) | 0.0426 (9) | |
| H8A | 0.7290 | 0.3836 | 0.4403 | 0.051* | |
| H8B | 0.7014 | 0.5991 | 0.4253 | 0.051* | |
| C9 | 0.6749 (5) | 0.3603 (5) | 0.34836 (10) | 0.0414 (9) | |
| H9 | 0.7586 | 0.4713 | 0.3414 | 0.050* | |
| C10 | 0.5169 (6) | 0.3322 (6) | 0.31409 (11) | 0.0503 (10) | |
| H10 | 0.4988 | 0.2025 | 0.3023 | 0.060* | |
| C11 | 0.3340 (6) | 0.4435 (6) | 0.32784 (11) | 0.0506 (11) | |
| H11 | 0.2047 | 0.3818 | 0.3243 | 0.061* | |
| C12 | 0.4461 (6) | 0.5003 (7) | 0.28864 (10) | 0.0613 (11) | |
| H12A | 0.3853 | 0.4739 | 0.2613 | 0.074* | |
| H12B | 0.5235 | 0.6181 | 0.2897 | 0.074* | |
| C13 | 0.4477 (6) | 0.7496 (5) | 0.36559 (12) | 0.0523 (11) | |
| H13A | 0.3469 | 0.8217 | 0.3511 | 0.078* | |
| H13B | 0.5679 | 0.7539 | 0.3494 | 0.078* | |
| H13C | 0.4701 | 0.8050 | 0.3932 | 0.078* | |
| C14 | 0.6127 (7) | 0.4764 (6) | 0.53450 (12) | 0.0650 (12) | |
| H14A | 0.6047 | 0.3512 | 0.5475 | 0.098* | |
| H14B | 0.5968 | 0.5743 | 0.5558 | 0.098* | |
| H14C | 0.7393 | 0.4911 | 0.5211 | 0.098* | |
| C15 | 0.8003 (6) | 0.1832 (5) | 0.35511 (11) | 0.0488 (10) | |
| H15A | 0.8877 | 0.2019 | 0.3792 | 0.059* | |
| H15B | 0.7171 | 0.0720 | 0.3608 | 0.059* | |
| C16 | 0.9745 (5) | −0.0230 (6) | 0.30723 (13) | 0.0550 (10) | |
| C17 | 1.1017 (6) | −0.0305 (7) | 0.26893 (12) | 0.0660 (12) | |
| H17A | 1.2179 | 0.0462 | 0.2735 | 0.099* | |
| H17B | 1.0301 | 0.0192 | 0.2450 | 0.099* | |
| H17C | 1.1394 | −0.1619 | 0.2635 | 0.099* |
| O1 | 0.106 (2) | 0.074 (2) | 0.0437 (16) | 0.017 (2) | 0.0283 (16) | −0.0019 (15) |
| O2 | 0.0592 (16) | 0.0591 (17) | 0.0427 (15) | 0.0035 (15) | 0.0182 (13) | −0.0021 (13) |
| O3 | 0.076 (2) | 0.0422 (16) | 0.0520 (16) | 0.0031 (15) | 0.0267 (16) | −0.0038 (13) |
| O4 | 0.137 (4) | 0.058 (2) | 0.184 (4) | 0.013 (2) | 0.101 (3) | 0.014 (3) |
| C1 | 0.080 (3) | 0.040 (2) | 0.040 (2) | 0.013 (2) | 0.014 (2) | −0.001 (2) |
| C2 | 0.069 (3) | 0.036 (2) | 0.039 (2) | 0.002 (2) | 0.0037 (19) | −0.0026 (18) |
| C3 | 0.054 (2) | 0.0344 (19) | 0.0366 (19) | 0.000 (2) | 0.0037 (17) | −0.0007 (17) |
| C4 | 0.049 (2) | 0.043 (2) | 0.040 (2) | 0.000 (2) | 0.0113 (18) | −0.0030 (19) |
| C5 | 0.038 (2) | 0.052 (2) | 0.044 (2) | −0.003 (2) | 0.0027 (17) | −0.0035 (19) |
| C6 | 0.0395 (19) | 0.045 (2) | 0.0324 (18) | −0.0053 (18) | 0.0005 (16) | −0.0023 (16) |
| C7 | 0.042 (2) | 0.040 (2) | 0.0340 (19) | −0.0054 (18) | 0.0046 (17) | −0.0033 (15) |
| C8 | 0.044 (2) | 0.047 (2) | 0.0366 (18) | −0.003 (2) | −0.0007 (16) | −0.0045 (17) |
| C9 | 0.045 (2) | 0.041 (2) | 0.039 (2) | −0.0055 (18) | 0.0052 (18) | −0.0040 (16) |
| C10 | 0.054 (2) | 0.058 (3) | 0.039 (2) | −0.005 (2) | 0.005 (2) | −0.0120 (19) |
| C11 | 0.044 (2) | 0.068 (3) | 0.040 (2) | −0.011 (2) | 0.0019 (18) | −0.0067 (18) |
| C12 | 0.061 (2) | 0.091 (3) | 0.0322 (19) | −0.002 (3) | −0.0002 (18) | 0.002 (2) |
| C13 | 0.057 (3) | 0.048 (2) | 0.052 (2) | −0.006 (2) | 0.000 (2) | 0.0053 (18) |
| C14 | 0.093 (3) | 0.058 (3) | 0.044 (2) | 0.004 (3) | −0.006 (2) | −0.003 (2) |
| C15 | 0.062 (2) | 0.046 (2) | 0.039 (2) | −0.001 (2) | 0.015 (2) | −0.0029 (18) |
| C16 | 0.047 (2) | 0.048 (3) | 0.070 (3) | −0.006 (2) | 0.013 (2) | −0.007 (2) |
| C17 | 0.063 (3) | 0.071 (3) | 0.064 (3) | 0.006 (3) | 0.014 (2) | −0.017 (2) |
| O1—C1 | 1.202 (4) | C9—C15 | 1.507 (5) |
| O2—C1 | 1.388 (4) | C9—C10 | 1.530 (5) |
| O2—C4 | 1.396 (4) | C9—H9 | 0.9800 |
| O3—C16 | 1.311 (5) | C10—C12 | 1.492 (6) |
| O3—C15 | 1.453 (4) | C10—C11 | 1.520 (5) |
| O4—C16 | 1.196 (5) | C10—H10 | 0.9800 |
| C1—C2 | 1.467 (6) | C11—C12 | 1.500 (5) |
| C2—C3 | 1.343 (4) | C11—H11 | 0.9800 |
| C2—C14 | 1.486 (5) | C12—H12A | 0.9700 |
| C3—C4 | 1.458 (5) | C12—H12B | 0.9700 |
| C3—C8 | 1.497 (5) | C13—H13A | 0.9600 |
| C4—C5 | 1.319 (5) | C13—H13B | 0.9600 |
| C5—C6 | 1.509 (5) | C13—H13C | 0.9600 |
| C5—H5 | 0.9300 | C14—H14A | 0.9600 |
| C6—C13 | 1.531 (5) | C14—H14B | 0.9600 |
| C6—C11 | 1.534 (5) | C14—H14C | 0.9600 |
| C6—C7 | 1.548 (5) | C15—H15A | 0.9700 |
| C7—C8 | 1.528 (4) | C15—H15B | 0.9700 |
| C7—C9 | 1.538 (5) | C16—C17 | 1.481 (5) |
| C7—H7 | 0.9800 | C17—H17A | 0.9600 |
| C8—H8A | 0.9700 | C17—H17B | 0.9600 |
| C8—H8B | 0.9700 | C17—H17C | 0.9600 |
| C1—O2—C4 | 106.7 (3) | C11—C10—C9 | 107.7 (3) |
| C16—O3—C15 | 119.3 (3) | C12—C10—H10 | 118.1 |
| O1—C1—O2 | 120.4 (4) | C11—C10—H10 | 118.1 |
| O1—C1—C2 | 130.5 (4) | C9—C10—H10 | 118.1 |
| O2—C1—C2 | 109.0 (3) | C12—C11—C10 | 59.2 (3) |
| C3—C2—C1 | 107.4 (3) | C12—C11—C6 | 120.1 (3) |
| C3—C2—C14 | 130.2 (4) | C10—C11—C6 | 107.5 (3) |
| C1—C2—C14 | 122.4 (3) | C12—C11—H11 | 118.2 |
| C2—C3—C4 | 108.1 (3) | C10—C11—H11 | 118.2 |
| C2—C3—C8 | 132.3 (3) | C6—C11—H11 | 118.2 |
| C4—C3—C8 | 119.6 (3) | C10—C12—C11 | 61.1 (3) |
| C5—C4—O2 | 124.5 (3) | C10—C12—H12A | 117.7 |
| C5—C4—C3 | 126.6 (3) | C11—C12—H12A | 117.7 |
| O2—C4—C3 | 108.8 (3) | C10—C12—H12B | 117.7 |
| C4—C5—C6 | 116.5 (3) | C11—C12—H12B | 117.7 |
| C4—C5—H5 | 121.8 | H12A—C12—H12B | 114.8 |
| C6—C5—H5 | 121.8 | C6—C13—H13A | 109.5 |
| C5—C6—C13 | 107.0 (3) | C6—C13—H13B | 109.5 |
| C5—C6—C11 | 115.2 (3) | H13A—C13—H13B | 109.5 |
| C13—C6—C11 | 112.5 (3) | C6—C13—H13C | 109.5 |
| C5—C6—C7 | 108.0 (3) | H13A—C13—H13C | 109.5 |
| C13—C6—C7 | 113.1 (3) | H13B—C13—H13C | 109.5 |
| C11—C6—C7 | 101.0 (3) | C2—C14—H14A | 109.5 |
| C8—C7—C9 | 122.4 (3) | C2—C14—H14B | 109.5 |
| C8—C7—C6 | 112.7 (3) | H14A—C14—H14B | 109.5 |
| C9—C7—C6 | 104.9 (3) | C2—C14—H14C | 109.5 |
| C8—C7—H7 | 105.2 | H14A—C14—H14C | 109.5 |
| C9—C7—H7 | 105.2 | H14B—C14—H14C | 109.5 |
| C6—C7—H7 | 105.2 | O3—C15—C9 | 107.7 (3) |
| C3—C8—C7 | 106.3 (3) | O3—C15—H15A | 110.2 |
| C3—C8—H8A | 110.5 | C9—C15—H15A | 110.2 |
| C7—C8—H8A | 110.5 | O3—C15—H15B | 110.2 |
| C3—C8—H8B | 110.5 | C9—C15—H15B | 110.2 |
| C7—C8—H8B | 110.5 | H15A—C15—H15B | 108.5 |
| H8A—C8—H8B | 108.7 | O4—C16—O3 | 122.2 (4) |
| C15—C9—C10 | 112.9 (3) | O4—C16—C17 | 124.5 (4) |
| C15—C9—C7 | 111.8 (3) | O3—C16—C17 | 113.3 (4) |
| C10—C9—C7 | 101.2 (3) | C16—C17—H17A | 109.5 |
| C15—C9—H9 | 110.2 | C16—C17—H17B | 109.5 |
| C10—C9—H9 | 110.2 | H17A—C17—H17B | 109.5 |
| C7—C9—H9 | 110.2 | C16—C17—H17C | 109.5 |
| C12—C10—C11 | 59.7 (3) | H17A—C17—H17C | 109.5 |
| C12—C10—C9 | 120.2 (4) | H17B—C17—H17C | 109.5 |
| C4—O2—C1—O1 | −178.9 (4) | C4—C3—C8—C7 | −21.5 (5) |
| C4—O2—C1—C2 | 0.5 (4) | C9—C7—C8—C3 | −178.6 (3) |
| O1—C1—C2—C3 | 178.5 (4) | C6—C7—C8—C3 | 55.0 (4) |
| O2—C1—C2—C3 | −0.8 (5) | C8—C7—C9—C15 | 69.2 (4) |
| O1—C1—C2—C14 | −0.9 (7) | C6—C7—C9—C15 | −161.0 (3) |
| O2—C1—C2—C14 | 179.8 (3) | C8—C7—C9—C10 | −170.4 (3) |
| C1—C2—C3—C4 | 0.7 (5) | C6—C7—C9—C10 | −40.5 (3) |
| C14—C2—C3—C4 | −179.9 (4) | C15—C9—C10—C12 | −151.0 (3) |
| C1—C2—C3—C8 | −176.5 (4) | C7—C9—C10—C12 | 89.3 (4) |
| C14—C2—C3—C8 | 2.9 (7) | C15—C9—C10—C11 | 144.3 (3) |
| C1—O2—C4—C5 | −177.6 (4) | C7—C9—C10—C11 | 24.6 (4) |
| C1—O2—C4—C3 | 0.0 (4) | C9—C10—C11—C12 | 115.2 (4) |
| C2—C3—C4—C5 | 177.1 (4) | C12—C10—C11—C6 | −115.2 (4) |
| C8—C3—C4—C5 | −5.3 (6) | C9—C10—C11—C6 | 0.0 (4) |
| C2—C3—C4—O2 | −0.4 (4) | C5—C6—C11—C12 | 155.4 (4) |
| C8—C3—C4—O2 | 177.2 (3) | C13—C6—C11—C12 | 32.3 (5) |
| O2—C4—C5—C6 | 175.6 (3) | C7—C6—C11—C12 | −88.5 (4) |
| C3—C4—C5—C6 | −1.5 (6) | C5—C6—C11—C10 | −140.6 (3) |
| C4—C5—C6—C13 | −88.5 (4) | C13—C6—C11—C10 | 96.4 (4) |
| C4—C5—C6—C11 | 145.6 (4) | C7—C6—C11—C10 | −24.5 (4) |
| C4—C5—C6—C7 | 33.5 (4) | C9—C10—C12—C11 | −93.8 (4) |
| C5—C6—C7—C8 | −62.8 (4) | C6—C11—C12—C10 | 93.4 (4) |
| C13—C6—C7—C8 | 55.4 (4) | C16—O3—C15—C9 | −153.7 (3) |
| C11—C6—C7—C8 | 175.8 (3) | C10—C9—C15—O3 | 66.5 (4) |
| C5—C6—C7—C9 | 161.8 (3) | C7—C9—C15—O3 | 179.9 (3) |
| C13—C6—C7—C9 | −80.0 (3) | C15—O3—C16—O4 | 2.8 (6) |
| C11—C6—C7—C9 | 40.5 (3) | C15—O3—C16—C17 | −175.9 (3) |
| C2—C3—C8—C7 | 155.5 (4) |
| H··· | ||||
| C8—H8 | 0.97 | 2.81 | 3.481 (5) | 127 |
| C11—H11···O3ii | 0.98 | 2.54 | 3.497 (5) | 167 |
| C13—H13 | 0.96 | 2.60 | 3.499 (5) | 157 |
| C13—H13 | 0.96 | 2.61 | 3.530 (6) | 160 |
| C14—H14 | 0.96 | 2.76 | 3.530 (5) | 138 |
| C17—H17 | 0.96 | 2.86 | 3.478 (5) | 124 |