Literature DB >> 36072134

Crystal structure and Hirshfeld surface analysis of 3-benzoyl-6-(1,3-dioxo-1-phenyl-butan-2-yl)-2-hy-droxy-2-methyl-4-phenyl-cyclo-hexane-1,1-dicarbo-nitrile.

Farid N Naghiyev1, Victor N Khrustalev2,3, Ekaterina V Dobrokhotova2, Mehmet Akkurt4, Ali N Khalilov5,1, Ajaya Bhattarai6, İbrahim G Mamedov1.   

Abstract

The central cyclo-hexane ring of the title compound, C32H28N2O4, adopts a chair conformation, with puckering parameters Q T = 0.618 (2) Å, θ = 176.72 (19)° and φ = 290 (3)°. In the crystal, mol-ecules are linked by O-H⋯O, C-H⋯O and C-H⋯N hydrogen bonds, forming layers parallel to (100). These layers are linked by weak C-H⋯π inter-actions and van der Waals forces. A Hirshfeld surface analysis indicates that the contributions from the most prevalent inter-actions are H⋯H (41.2% contribution), C⋯H/H⋯C (20.3%), O⋯H/H⋯O (17.8%) and N⋯H/H⋯N (10.6%). © Naghiyev et al. 2022.

Entities:  

Keywords:  Hirshfeld surface analysis; crystal structure; cyclo­hexane conformation; hydrogen bond; van der Waals forces

Year:  2022        PMID: 36072134      PMCID: PMC9431776          DOI: 10.1107/S2056989022004777

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Functionalized derivatives of carbo- and heterocyclic compounds are of great inter­est in the fields of organic synthesis, catalysis, materials science and medicinal chemistry (Zubkov et al., 2018 ▸; Shikhaliyev et al., 2019 ▸; Viswanathan et al., 2019 ▸; Gurbanov et al., 2020 ▸; Khalilov et al., 2021 ▸). In particular, β-dicarbonyl compounds are important chemical substrates for the construction of various classes of organic compounds (Kaur et al., 2021 ▸). To the best of our knowledge, the inter­action of β-dicarbonyl compounds with phen­yl–allyl­idene–malono­nitriles leads to the formation of xanthene, benzo[b]pyran and pyridine derivatives (Bardasov et al., 2014 ▸; Amoozadeh et al., 2018 ▸). Inter­estingly, we discovered that in case of the reaction of one equivalent of phen­yl–allyl­idene–malono­nitrile with two equivalents of benzoyl­acetone at room temperature, a substituted cyclo­hexane derivative was the product. In the context of ongoing structural studies (Safavora et al., 2019 ▸; Aliyeva et al., 2011 ▸; Mamedov et al., 2022 ▸), we report here the crystal structure and Hirshfeld surface analysis of the title compound, 3-benzoyl-6-(1,3-dioxo-1-phenyl­butan-2-yl)-2-hy­droxy-2-methyl-4-phenyl­cyclo­hexane-1,1-dicarbo­nitrile.

Structural commentary

In the title compound (Fig. 1 ▸), the central cyclo­hexane ring (A: atoms C1–C6) adopts a chair conformation, with puckering parameters (Cremer & Pople, 1975 ▸) Q T = 0.618 (2) Å, θ = 176.72 (19)° and φ = 290 (3)°. The phenyl (B: C11–C16; C: C21–C26; D: C27–C32) rings make dihedral angles of 78.23 (10), 83.20 (11) and 82.09 (10)°, respectively, with the mean plane of the central cyclo­hexane ring. The dihedral angles between the phenyl rings are B/C = 21.88 (10)°, B/D = 21.88 (19)° and C/D = 73.64 (10)°. The C1—C7—C10—C11, C1—C7—C10—O2, C1—C7—C8—C9 and C1—C7—C8—O1 torsion angles are −157.13 (16), 27.9 (2), −73.6 (2) and 106.7 (2)°. The phenyl, benzoyl, hy­droxy, cyano C2—C17≡N1 and 1,3-dioxo-1-phenyl­butan-2-yl substituents all occupy equatorial sites, so that the cyano C2—C18≡N2 substituent necessarily occupies an axial site. There are five stereogenic centres and the chirality about the C1, C3, C4, C5 and C7 atoms are S, R, R, S and R, respectively. The values of the geometric parameters of the title compound are normal and compatible with those of related compounds compiled in the Database survey section (§5).
Figure 1

The mol­ecular structure of the title compound, showing the labelling scheme and displacement ellipsoids drawn at the 30% probability level.

Supra­molecular features

In the crystal, O—H⋯O hydrogen bonds of medium strength, and weaker C—H⋯O and C—H⋯N inter­actions link adjacent mol­ecules, forming layers extending parallel to (100) (Table 1 ▸ and Figs. 2 ▸–4 ▸ ▸). These layers are connected by weak C—H⋯π inter­actions and van der Waals inter­actions (Table 1 ▸ and Fig. 5 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

Cg4 is the centroid of the C27–C32 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O1i 0.94 (3)1.89 (3)2.787 (2)159 (3)
C1—H1⋯N1i 1.002.503.466 (3)163
C12—H12⋯O4ii 0.952.583.242 (3)127
C28—H28⋯O2ii 0.952.403.319 (2)164
C14—H14⋯Cg4iii 0.952.803.475 (2)129

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 2

A view of the mol­ecular packing down [100], showing O—H⋯O, C—H⋯O and C—H⋯N hydrogen bonds as dashed lines.

Figure 3

A view of the mol­ecular packing down [010]. Inter­molecular inter­actions are depicted as in Fig. 2 ▸.

Figure 4

A view of the mol­ecular packing down [001]. Inter­molecular inter­actions are depicted as in Fig. 2 ▸.

Figure 5

The crystal packing viewed down [010], showing O—H⋯O, C—H⋯O, C—H⋯N hydrogen bonds and C—H⋯π inter­actions.

Hirshfeld surface analysis

A Hirshfeld surface for the title compound and its associated two-dimensional fingerprint plots were analyzed and calculated using CrystalExplorer (Version 17.5; Turner et al., 2017 ▸). Hirshfeld surfaces allow for the display of inter­molecular inter­actions by using distinct colours and intensities to indicate short and long contacts, as well as the relative strengths of the inter­actions. The three-dimensional (3D) Hirshfeld surface of the title compound plotted over d norm in the range from −0.5877 to +1.7202 a.u. is shown in Fig. 6 ▸. As discussed above, the O3—H3⋯O1 inter­actions play a key role in the mol­ecular packing of the title compound.
Figure 6

(a) Front and (b) back sides of the 3D Hirshfeld surface of the title compound plotted over d norm in the range from −0.5877 to +1.7202 a.u.

The overall two-dimensional (2D) fingerprint plot [Fig. 7 ▸(a)] and those delineated into H⋯H (41.2% contribution), C⋯H/H⋯C (20.3%), O⋯H/H⋯O (17.8%) and N⋯H/H⋯N (10.6%) contacts are illustrated in Figs. 7 ▸(b)–(e), respectively. The other minor contributions to the Hirshfeld surface are from N⋯C/C⋯N (1.0%), C⋯C (0.9%), O⋯N/N⋯O (0.8%) and O⋯C/C⋯O (0.8%) contacts. The large number of H⋯H, C⋯H/H⋯C, O⋯H/H⋯O and N⋯H/H⋯N inter­actions suggest that van der Waals inter­actions and hydrogen bonding play major roles in the crystal packing. Various inter­atomic contacts are compiled in Table 2 ▸.
Figure 7

A view of the 2D fingerprint plots for the title compound, showing (a) all inter­actions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) O⋯H/H⋯O and (e) N⋯H/H⋯N inter­actions. The d i and d e values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface.

Table 2

Summary of short inter­atomic contacts (Å) in the title compound

ContactDistanceSymmetry operation
O1⋯H31.891 − x,  + y,  − z
H9A⋯H6A 2.391 − x, 1 − y, − z
O4⋯H152.73−1 + x, y, z
H19B⋯N12.771 − x, 1 − y, 1 − z
H26⋯H312.37 x,  − y,  + z
C25⋯C243.367x, 1 − y, 1 − z
H29⋯H232.41 x,  − y, −  + z
H13⋯H152.362 − x,  + y,  − z

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.42, update of September 2021; Groom et al., 2016 ▸) for the 2-hydroxy-2-methylcyclohexane-1,1-dicarbonitrile moiety revealed five structures closely related to the title compound: 3-cyano-4-hy­droxy-2-(4-methyl­phen­yl)-6-oxo-N-phenyl-4-(thio­phen-2-yl)cyclo­hexane-1-car­boxamide hydrate (CSD refcode UPOMOE; Naghiyev et al., 2021 ▸), (2RS,3SR,4RS,6SR)-3-benzoyl-4-hy­droxy-2,4,6-tri­phenyl­cyclo­hexane-1,1-dicarbo­nitrile (MEHMOC01; Rodríguez et al., 2008 ▸), 3-(4-fluoro­benzo­yl)-4-(4-fluoro­phen­yl)-4-hy­droxy-2,6-di­phenyl­cyclo­hexane-1,1-dicarbo­nitrile (SODHAW; Narayana et al., 2014 ▸), 5-cyano-2-hy­droxy-2-methyl-N-phenyl-4-(pyridin-4-yl)-6-(thio­phen-2-yl)-3,4-di­hydro-2H-pyran-3-carboxamide (JUPHUA; Naghiyev et al., 2020 ▸) and 5-cyano-2-hy­droxy-2-methyl-6-oxo-N-phenyl-4-(thio­phen-2-yl)piperi­dine-3-car­box­amide methanol solvate (JUPJOW; Naghiyev et al., 2020 ▸). In the crystal of UPOMOE, the central cyclo­hexane ring adopts a chair conformation. Mol­ecules are linked by N—H⋯O, C—H⋯O and C—H⋯N hydrogen bonds, forming layers parallel to (100), which inter­act via the van der Waals forces between them. In the crystal of MEHMOC01, the mol­ecules are linked into complex sheets by two C—H⋯O hydrogen bonds and three C—H⋯N hydrogen bonds. In the crystal of SODHAW, mol­ecules are linked via pairs of O—H⋯N hydrogen bonds, forming inversion dimers. The dimers are linked via C—H⋯N and C—H⋯O hydrogen bonds, forming chains parallel to [001]. C—H⋯F hydrogen bonds link the chains into sheets lying parallel to (100). In JUPHUA, the crystal structure is stabilized by an extensive hydrogen-bonding network defined by N—H⋯N, O—H⋯N and C—H⋯O inter­actions with graph-set motifs C(9), C(8), (32) and (48), with base vectors [100], [011] and [110] for the 3D network. In JUPJOW, the crystal structure is also stabilized by an extensive hydrogen-bonding network of N—H⋯O, O—H⋯O and O—H⋯N inter­actions, where the methanol mol­ecule participate with neighbouring mol­ecules with graph-set motifs C(4), (10), (28), (8) and (36), with base vectors [010], [100] and [001] for the 3D network. For JUPHUA and JUPJOW, another non-covalent weak inter­action is also observed, specifically a chalcogen⋯π interaction (ca 3.6 Å) in JUPHUA between the thiophenyl sulfur fragment and the phenyl ring and a hydrogen⋯π interaction (ca 3.2 Å) in JUPJOW between the methyl group on the piperidone ring and the phenyl ring.

Synthesis and crystallization

To a solution of 2-(3-phenyl­allyl­idene)malono­nitrile (0.92 g, 5 mmol) and benzoyl­acetone (1.68 g, 10 mmol) in benzene (25 ml), 3–4 drops of 1-methyl­piperazine were added and the mixture was stirred for 10 min and kept at room temperature for 72 h. Benzene (15 ml) was then removed from the reaction mixture by distillation, which was left overnight. The crystals which formed were separated by filtration and recrystallized from an ethanol–water (1:1 v/v) solution (yield 41%; m.p. 514–515 K). 1H NMR (300 MHz, DMSO-d 6, ppm): δ 1.74 (s, 3H, CH3), 2.01 (t, 2H, CH2), 2.12 (s, 3H, COCH3), 3.47 (d–d, 1H, CH), 3.52 (s, 1H, OH), 4.08 (m, 1H, CH), 4.62 (d, 1H, CH), 4.86 (d, 1H, CH), 7.12–7.78 (m, 15H, 15Ar-H). 13C NMR (75 MHz, DMSO-d 6, ppm): δ 24.28 (CH3), 30.36 (COCH3), 34.42 (CH2), 39.41 (CH), 45.49 (CH), 56.46 (C ), 57.01 (CH), 60.85 (CH), 81.92 (O—C ), 111.37 (CN), 111.81 (CN), 125.94 (CHarom), 127.22 (2CHarom), 127.86 (2CHarom), 128.90 (2CHarom), 128.98 (2CHarom), 129.31 (2CHarom), 130.35 (2CHarom), 132.52 (CHarom), 133.85 (CHarom), 135.44 (Carom), 138.49 (Carom), 141.22 (Carom), 194.97 (C=O), 195.93 (C=O), 200.21 (C=O).

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. Due to large differences between calculated and observed intensities, about 40 reflections were omitted from the refinement. The H atom of the OH group was located in a difference map and its positional parameters were allowed to refine freely [O3—H3 = 0.93 (3) Å], with U iso(H) = 1.5U eq(O). All H atoms bound to C atoms were positioned geometrically and refined as riding, with C—H = 0.95 (aromatic), 0.99 (methyl­ene), 1.00 (methine) and 0.98 Å (meth­yl), with U iso(H) = 1.5U eq(C) for methyl H atoms and 1.2U eq(C) for the others.
Table 3

Experimental details

Crystal data
Chemical formulaC32H28N2O4
M r 504.56
Crystal system, space groupMonoclinic, P21/c
Temperature (K)100
a, b, c (Å)13.9798 (3), 11.8411 (2), 15.7406 (3)
β (°)91.901 (2)
V3)2604.21 (9)
Z 4
Radiation typeCu Kα
μ (mm−1)0.69
Crystal size (mm)0.09 × 0.06 × 0.06
 
Data collection
DiffractometerRigaku XtaLAB Synergy Dualflex HyPix
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2021)
T min, T max 0.933, 0.949
No. of measured, independent and observed [I > 2σ(I)] reflections77914, 5618, 5497
R int 0.110
(sin θ/λ)max−1)0.639
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.074, 0.187, 1.11
No. of reflections5618
No. of parameters348
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.54, −0.33

Computer programs: CrysAlis PRO (Rigaku OD, 2021 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989022004777/wm5643sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022004777/wm5643Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022004777/wm5643Isup3.cml CCDC reference: 2170547 Additional supporting information: crystallographic information; 3D view; checkCIF report
C32H28N2O4F(000) = 1064
Mr = 504.56Dx = 1.287 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 13.9798 (3) ÅCell parameters from 52541 reflections
b = 11.8411 (2) Åθ = 3.1–79.4°
c = 15.7406 (3) ŵ = 0.69 mm1
β = 91.901 (2)°T = 100 K
V = 2604.21 (9) Å3Prism, colourless
Z = 40.09 × 0.06 × 0.06 mm
Rigaku XtaLAB Synergy Dualflex HyPix diffractometer5497 reflections with I > 2σ(I)
Radiation source: micro-focus sealed X-ray tubeRint = 0.110
φ and ω scansθmax = 80.3°, θmin = 4.7°
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2021)h = −17→17
Tmin = 0.933, Tmax = 0.949k = −14→12
77914 measured reflectionsl = −20→20
5618 independent reflections
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: mixed
wR(F2) = 0.187H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.0869P)2 + 2.2708P] where P = (Fo2 + 2Fc2)/3
5618 reflections(Δ/σ)max < 0.001
348 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.60930 (11)0.56945 (13)0.06669 (10)0.0327 (3)
O20.68557 (10)0.25976 (12)0.19898 (9)0.0290 (3)
O30.42148 (11)0.24428 (13)0.31883 (10)0.0324 (3)
H30.415 (2)0.199 (3)0.367 (2)0.049*
O40.20303 (11)0.28810 (13)0.28805 (10)0.0351 (4)
N10.52004 (13)0.62769 (17)0.35886 (12)0.0344 (4)
N20.65726 (13)0.31942 (18)0.39833 (12)0.0368 (4)
C10.52388 (13)0.39859 (16)0.21623 (12)0.0231 (4)
H10.52250.31580.20380.028*
C20.51310 (13)0.41460 (17)0.31391 (12)0.0240 (4)
C30.41622 (13)0.35964 (18)0.34400 (12)0.0266 (4)
C40.33213 (13)0.42000 (17)0.29384 (12)0.0237 (4)
H40.33420.50250.30740.028*
C50.34164 (13)0.40464 (16)0.19736 (12)0.0236 (4)
H50.34080.32190.18460.028*
C60.43762 (13)0.45324 (17)0.16959 (12)0.0244 (4)
H6A0.44320.44170.10770.029*
H6B0.43860.53560.18050.029*
C70.62107 (13)0.44637 (16)0.18714 (12)0.0237 (4)
H70.63680.51720.21930.028*
C80.61386 (13)0.47219 (17)0.09111 (12)0.0261 (4)
C90.61333 (15)0.3741 (2)0.03178 (13)0.0320 (4)
H9A0.57780.3941−0.02080.048*
H9B0.58250.30950.05850.048*
H9C0.67930.35430.01870.048*
C100.70293 (13)0.36013 (16)0.20056 (12)0.0235 (4)
C110.80373 (13)0.40261 (17)0.20804 (12)0.0255 (4)
C120.82669 (14)0.51657 (19)0.20982 (14)0.0308 (4)
H120.77730.57170.20780.037*
C130.92204 (15)0.5500 (2)0.21452 (15)0.0352 (5)
H130.93760.62810.21520.042*
C140.99465 (15)0.4702 (2)0.21823 (15)0.0364 (5)
H141.05970.49350.22200.044*
C150.97192 (15)0.3563 (2)0.21636 (17)0.0403 (6)
H151.02150.30150.21880.048*
C160.87744 (15)0.32241 (19)0.21094 (15)0.0346 (5)
H160.86230.24420.20920.041*
C170.51666 (13)0.53547 (18)0.33812 (12)0.0257 (4)
C180.59353 (14)0.35950 (18)0.36132 (12)0.0269 (4)
C190.40934 (15)0.3705 (2)0.43962 (13)0.0343 (5)
H19A0.40540.45050.45500.051*
H19B0.46620.33680.46750.051*
H19C0.35200.33110.45810.051*
C200.23709 (13)0.37142 (17)0.32275 (12)0.0254 (4)
C210.19117 (14)0.42334 (19)0.39784 (13)0.0301 (4)
C220.20292 (16)0.5357 (2)0.41997 (16)0.0403 (5)
H220.23850.58440.38490.048*
C230.16292 (19)0.5777 (3)0.4932 (2)0.0582 (8)
H230.16970.65530.50740.070*
C240.1136 (2)0.5067 (4)0.54509 (18)0.0669 (10)
H240.08780.53510.59590.080*
C250.1012 (2)0.3952 (4)0.5241 (2)0.0663 (10)
H250.06750.34650.56060.080*
C260.13807 (17)0.3531 (3)0.44923 (17)0.0457 (6)
H260.12700.27670.43330.055*
C270.26091 (13)0.46041 (17)0.14557 (12)0.0243 (4)
C280.23681 (13)0.57302 (17)0.15741 (13)0.0261 (4)
H280.26810.61500.20160.031*
C290.16717 (14)0.62547 (19)0.10523 (13)0.0297 (4)
H290.15070.70220.11470.036*
C300.12222 (14)0.5654 (2)0.03973 (14)0.0330 (5)
H300.07560.60110.00350.040*
C310.14567 (15)0.4533 (2)0.02747 (14)0.0346 (5)
H310.11490.4119−0.01730.042*
C320.21395 (15)0.40056 (19)0.08018 (13)0.0301 (4)
H320.22870.32320.07160.036*
U11U22U33U12U13U23
O10.0331 (8)0.0336 (8)0.0315 (8)0.0030 (6)0.0039 (6)0.0075 (6)
O20.0234 (7)0.0273 (7)0.0364 (8)0.0000 (5)0.0006 (5)0.0033 (6)
O30.0323 (8)0.0267 (7)0.0385 (8)−0.0003 (6)0.0031 (6)0.0060 (6)
O40.0280 (7)0.0334 (8)0.0444 (9)−0.0061 (6)0.0048 (6)−0.0021 (7)
N10.0320 (9)0.0354 (10)0.0355 (9)0.0023 (7)−0.0010 (7)−0.0007 (8)
N20.0290 (9)0.0458 (11)0.0353 (10)0.0044 (8)−0.0025 (7)0.0073 (8)
C10.0188 (8)0.0272 (9)0.0234 (9)−0.0002 (7)0.0000 (6)0.0028 (7)
C20.0198 (8)0.0288 (10)0.0233 (9)0.0014 (7)−0.0017 (7)0.0021 (7)
C30.0215 (9)0.0329 (10)0.0255 (9)0.0000 (7)0.0005 (7)0.0063 (8)
C40.0197 (8)0.0279 (9)0.0236 (9)0.0002 (7)0.0009 (7)0.0011 (7)
C50.0195 (8)0.0276 (9)0.0236 (9)−0.0009 (7)−0.0003 (6)0.0014 (7)
C60.0207 (8)0.0319 (10)0.0204 (8)0.0006 (7)0.0006 (6)0.0034 (7)
C70.0193 (8)0.0270 (9)0.0248 (9)0.0007 (7)0.0002 (6)0.0028 (7)
C80.0166 (8)0.0338 (10)0.0280 (9)0.0010 (7)0.0026 (6)0.0046 (8)
C90.0304 (10)0.0407 (12)0.0250 (9)0.0034 (8)0.0017 (8)0.0022 (8)
C100.0209 (8)0.0272 (9)0.0225 (8)0.0020 (7)0.0011 (6)0.0030 (7)
C110.0199 (8)0.0318 (10)0.0248 (9)0.0022 (7)0.0009 (7)0.0029 (7)
C120.0230 (9)0.0331 (11)0.0361 (11)0.0012 (8)−0.0006 (7)0.0009 (8)
C130.0245 (10)0.0347 (11)0.0462 (12)−0.0045 (8)−0.0024 (8)−0.0007 (9)
C140.0193 (9)0.0457 (13)0.0441 (12)−0.0019 (8)−0.0011 (8)0.0112 (10)
C150.0216 (10)0.0410 (13)0.0585 (15)0.0064 (8)0.0042 (9)0.0166 (11)
C160.0228 (9)0.0328 (11)0.0482 (13)0.0028 (8)0.0027 (8)0.0112 (9)
C170.0196 (8)0.0335 (11)0.0238 (9)0.0016 (7)−0.0016 (6)0.0025 (7)
C180.0235 (9)0.0335 (10)0.0235 (9)0.0007 (7)0.0006 (7)0.0045 (8)
C190.0251 (10)0.0536 (13)0.0242 (10)0.0017 (9)0.0007 (7)0.0010 (9)
C200.0226 (9)0.0269 (9)0.0266 (9)0.0015 (7)0.0002 (7)0.0047 (7)
C210.0187 (8)0.0427 (12)0.0289 (10)0.0045 (8)0.0020 (7)0.0038 (8)
C220.0237 (10)0.0520 (14)0.0453 (13)0.0038 (9)0.0017 (9)−0.0153 (11)
C230.0311 (12)0.088 (2)0.0552 (17)0.0090 (13)0.0003 (11)−0.0338 (16)
C240.0444 (15)0.121 (3)0.0360 (13)0.0343 (18)0.0033 (11)−0.0123 (16)
C250.0412 (15)0.112 (3)0.0469 (16)0.0273 (16)0.0208 (12)0.0340 (18)
C260.0336 (12)0.0575 (16)0.0470 (14)0.0113 (10)0.0145 (10)0.0213 (12)
C270.0181 (8)0.0312 (10)0.0236 (9)−0.0027 (7)0.0015 (6)0.0025 (7)
C280.0222 (9)0.0288 (10)0.0271 (9)−0.0025 (7)−0.0007 (7)0.0017 (7)
C290.0236 (9)0.0322 (10)0.0333 (10)0.0007 (8)0.0002 (7)0.0045 (8)
C300.0225 (9)0.0446 (12)0.0315 (10)0.0006 (8)−0.0037 (7)0.0076 (9)
C310.0267 (10)0.0446 (12)0.0321 (10)−0.0014 (9)−0.0076 (8)−0.0044 (9)
C320.0261 (9)0.0340 (11)0.0300 (10)0.0012 (8)−0.0023 (8)−0.0039 (8)
O1—C81.215 (3)C12—H120.9500
O2—C101.213 (2)C13—C141.387 (3)
O3—C31.425 (3)C13—H130.9500
O3—H30.93 (3)C14—C151.386 (4)
O4—C201.217 (3)C14—H140.9500
N1—C171.140 (3)C15—C161.380 (3)
N2—C181.151 (3)C15—H150.9500
C1—C61.534 (2)C16—H160.9500
C1—C71.555 (2)C19—H19A0.9800
C1—C21.561 (3)C19—H19B0.9800
C1—H11.0000C19—H19C0.9800
C2—C181.480 (3)C20—C211.496 (3)
C2—C171.481 (3)C21—C221.384 (3)
C2—C31.589 (3)C21—C261.392 (3)
C3—C191.517 (3)C22—C231.390 (4)
C3—C41.567 (3)C22—H220.9500
C4—C201.531 (3)C23—C241.374 (6)
C4—C51.540 (3)C23—H230.9500
C4—H41.0000C24—C251.370 (6)
C5—C271.521 (3)C24—H240.9500
C5—C61.537 (3)C25—C261.393 (4)
C5—H51.0000C25—H250.9500
C6—H6A0.9900C26—H260.9500
C6—H6B0.9900C27—C281.389 (3)
C7—C81.542 (3)C27—C321.396 (3)
C7—C101.543 (3)C28—C291.398 (3)
C7—H71.0000C28—H280.9500
C8—C91.490 (3)C29—C301.386 (3)
C9—H9A0.9800C29—H290.9500
C9—H9B0.9800C30—C311.383 (3)
C9—H9C0.9800C30—H300.9500
C10—C111.497 (3)C31—C321.392 (3)
C11—C121.387 (3)C31—H310.9500
C11—C161.401 (3)C32—H320.9500
C12—C131.390 (3)
C3—O3—H3108 (2)C13—C12—H12120.0
C6—C1—C7112.72 (15)C14—C13—C12120.5 (2)
C6—C1—C2108.66 (15)C14—C13—H13119.8
C7—C1—C2111.08 (15)C12—C13—H13119.8
C6—C1—H1108.1C15—C14—C13119.7 (2)
C7—C1—H1108.1C15—C14—H14120.2
C2—C1—H1108.1C13—C14—H14120.2
C18—C2—C17106.12 (16)C16—C15—C14120.2 (2)
C18—C2—C1110.26 (16)C16—C15—H15119.9
C17—C2—C1111.54 (16)C14—C15—H15119.9
C18—C2—C3108.05 (15)C15—C16—C11120.4 (2)
C17—C2—C3109.92 (16)C15—C16—H16119.8
C1—C2—C3110.78 (15)C11—C16—H16119.8
O3—C3—C19111.25 (17)N1—C17—C2178.2 (2)
O3—C3—C4110.00 (16)N2—C18—C2178.2 (2)
C19—C3—C4112.97 (17)C3—C19—H19A109.5
O3—C3—C2104.92 (15)C3—C19—H19B109.5
C19—C3—C2110.11 (16)H19A—C19—H19B109.5
C4—C3—C2107.20 (15)C3—C19—H19C109.5
C20—C4—C5110.67 (15)H19A—C19—H19C109.5
C20—C4—C3108.84 (15)H19B—C19—H19C109.5
C5—C4—C3110.81 (15)O4—C20—C21121.07 (18)
C20—C4—H4108.8O4—C20—C4120.11 (18)
C5—C4—H4108.8C21—C20—C4118.68 (17)
C3—C4—H4108.8C22—C21—C26119.3 (2)
C27—C5—C6108.92 (15)C22—C21—C20122.9 (2)
C27—C5—C4112.99 (15)C26—C21—C20117.7 (2)
C6—C5—C4109.95 (15)C21—C22—C23120.4 (3)
C27—C5—H5108.3C21—C22—H22119.8
C6—C5—H5108.3C23—C22—H22119.8
C4—C5—H5108.3C24—C23—C22119.8 (3)
C1—C6—C5112.69 (15)C24—C23—H23120.1
C1—C6—H6A109.1C22—C23—H23120.1
C5—C6—H6A109.1C25—C24—C23120.5 (3)
C1—C6—H6B109.1C25—C24—H24119.7
C5—C6—H6B109.1C23—C24—H24119.7
H6A—C6—H6B107.8C24—C25—C26120.1 (3)
C8—C7—C10106.82 (15)C24—C25—H25119.9
C8—C7—C1109.36 (15)C26—C25—H25119.9
C10—C7—C1111.73 (15)C21—C26—C25119.8 (3)
C8—C7—H7109.6C21—C26—H26120.1
C10—C7—H7109.6C25—C26—H26120.1
C1—C7—H7109.6C28—C27—C32118.43 (18)
O1—C8—C9122.77 (18)C28—C27—C5121.58 (17)
O1—C8—C7119.93 (18)C32—C27—C5119.82 (18)
C9—C8—C7117.30 (17)C27—C28—C29120.97 (18)
C8—C9—H9A109.5C27—C28—H28119.5
C8—C9—H9B109.5C29—C28—H28119.5
H9A—C9—H9B109.5C30—C29—C28119.9 (2)
C8—C9—H9C109.5C30—C29—H29120.0
H9A—C9—H9C109.5C28—C29—H29120.0
H9B—C9—H9C109.5C31—C30—C29119.51 (19)
O2—C10—C11121.19 (17)C31—C30—H30120.2
O2—C10—C7119.91 (17)C29—C30—H30120.2
C11—C10—C7118.70 (16)C30—C31—C32120.6 (2)
C12—C11—C16119.29 (18)C30—C31—H31119.7
C12—C11—C10123.02 (17)C32—C31—H31119.7
C16—C11—C10117.66 (18)C31—C32—C27120.5 (2)
C11—C12—C13119.9 (2)C31—C32—H32119.7
C11—C12—H12120.0C27—C32—H32119.7
C6—C1—C2—C18178.10 (16)O2—C10—C11—C12179.81 (19)
C7—C1—C2—C18−57.3 (2)C7—C10—C11—C124.9 (3)
C6—C1—C2—C17−64.26 (19)O2—C10—C11—C161.6 (3)
C7—C1—C2—C1760.3 (2)C7—C10—C11—C16−173.24 (18)
C6—C1—C2—C358.5 (2)C16—C11—C12—C13−0.1 (3)
C7—C1—C2—C3−176.92 (15)C10—C11—C12—C13−178.23 (19)
C18—C2—C3—O3−63.67 (19)C11—C12—C13—C14−0.6 (4)
C17—C2—C3—O3−179.06 (15)C12—C13—C14—C150.6 (4)
C1—C2—C3—O357.22 (19)C13—C14—C15—C16−0.1 (4)
C18—C2—C3—C1956.1 (2)C14—C15—C16—C11−0.6 (4)
C17—C2—C3—C19−59.3 (2)C12—C11—C16—C150.6 (3)
C1—C2—C3—C19177.02 (17)C10—C11—C16—C15178.9 (2)
C18—C2—C3—C4179.40 (16)C5—C4—C20—O434.1 (2)
C17—C2—C3—C464.01 (19)C3—C4—C20—O4−87.9 (2)
C1—C2—C3—C4−59.7 (2)C5—C4—C20—C21−150.15 (17)
O3—C3—C4—C2067.89 (19)C3—C4—C20—C2187.8 (2)
C19—C3—C4—C20−57.1 (2)O4—C20—C21—C22−155.3 (2)
C2—C3—C4—C20−178.56 (15)C4—C20—C21—C2229.0 (3)
O3—C3—C4—C5−54.0 (2)O4—C20—C21—C2627.6 (3)
C19—C3—C4—C5−179.00 (17)C4—C20—C21—C26−148.07 (19)
C2—C3—C4—C559.5 (2)C26—C21—C22—C230.7 (3)
C20—C4—C5—C2758.4 (2)C20—C21—C22—C23−176.3 (2)
C3—C4—C5—C27179.24 (15)C21—C22—C23—C241.7 (4)
C20—C4—C5—C6−179.68 (15)C22—C23—C24—C25−1.7 (4)
C3—C4—C5—C6−58.8 (2)C23—C24—C25—C26−0.6 (4)
C7—C1—C6—C5179.09 (16)C22—C21—C26—C25−2.9 (3)
C2—C1—C6—C5−57.3 (2)C20—C21—C26—C25174.2 (2)
C27—C5—C6—C1−177.85 (16)C24—C25—C26—C212.9 (4)
C4—C5—C6—C157.8 (2)C6—C5—C27—C28−70.2 (2)
C6—C1—C7—C8−35.8 (2)C4—C5—C27—C2852.3 (2)
C2—C1—C7—C8−158.06 (16)C6—C5—C27—C32105.0 (2)
C6—C1—C7—C10−153.88 (16)C4—C5—C27—C32−132.47 (19)
C2—C1—C7—C1083.90 (19)C32—C27—C28—C290.0 (3)
C10—C7—C8—O1−132.18 (18)C5—C27—C28—C29175.32 (18)
C1—C7—C8—O1106.7 (2)C27—C28—C29—C30−1.0 (3)
C10—C7—C8—C947.5 (2)C28—C29—C30—C311.1 (3)
C1—C7—C8—C9−73.6 (2)C29—C30—C31—C32−0.1 (3)
C8—C7—C10—O2−91.6 (2)C30—C31—C32—C27−0.9 (3)
C1—C7—C10—O227.9 (2)C28—C27—C32—C310.9 (3)
C8—C7—C10—C1183.3 (2)C5—C27—C32—C31−174.44 (19)
C1—C7—C10—C11−157.13 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1i0.94 (3)1.89 (3)2.787 (2)159 (3)
C1—H1···O21.002.382.815 (2)106
C1—H1···O31.002.482.855 (2)102
C1—H1···N1i1.002.503.466 (3)163
C5—H5···O31.002.532.892 (2)101
C12—H12···O4ii0.952.583.242 (3)127
C28—H28···O2ii0.952.403.319 (2)164
C14—H14···Cg4iii0.952.803.475 (2)129
  12 in total

1.  2-(2-(2,4-dioxopentan-3-ylidene)hydrazineyl)benzonitrile as novel inhibitor of receptor tyrosine kinase and PI3K/AKT/mTOR signaling pathway in glioblastoma.

Authors:  Anisha Viswanathan; Dinesh Kute; Aliyu Musa; Saravanan Konda Mani; Vili Sipilä; Frank Emmert-Streib; Fedor I Zubkov; Atash V Gurbanov; Olli Yli-Harja; Meenakshisundaram Kandhavelu
Journal:  Eur J Med Chem       Date:  2019-01-22       Impact factor: 6.514

2.  Crystal structure and Hirshfeld surface analysis of 3-cyano-4-hy-droxy-2-(4-methyl-phen-yl)-6-oxo-N-phenyl-4-(thio-phen-2-yl)cyclo-hexane-1-carbox-amide 0.04-hydrate.

Authors:  Farid N Naghiyev; Victor N Khrustalev; Mehmet Akkurt; Elnur Z Huseynov; Ali N Khalilov; Anzurat A Akobirshoeva; İbrahim G Mamedov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-03-09

3.  (1RS,2SR,3RS,5SR)-2-benzoyl-4,4-dicyano-1,3,5-triphenylcyclohexanol at 120 K: complex sheets built from C-H...O and C-H...N hydrogen bonds.

Authors:  Ricuarte Rodríguez; Manuel Nogueras; John N Low; Justo Cobo; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2008-09-30       Impact factor: 1.172

4.  Crystal Structure and Hirshfeld Surface Analysis of Acetoacetanilide Based Reaction Products.

Authors:  Farid N Naghiyev; Jonathan Cisterna; Ali N Khalilov; Abel M Maharramov; Rizvan K Askerov; Khammed A Asadov; Ibrahim G Mamedov; Khaver S Salmanli; Alejandro Cárdenas; Ivan Brito
Journal:  Molecules       Date:  2020-05-09       Impact factor: 4.411

5.  4,6-Dihy-droxy-4,6-dimethyl-1,3-diazinane-2-thione.

Authors:  Khatira N Aliyeva; Abel M Maharramov; Mirze A Allahverdiyev; Atash V Gurbanov; Iván Brito
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11

6.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  checkCIF validation ALERTS: what they mean and how to respond.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-01-01

9.  3-(4-Fluoro-benzo-yl)-4-(4-fluoro-phen-yl)-4-hy-droxy-2,6-di-phenyl-cyclo-hexane-1,1-dicarbo-nitrile.

Authors:  B Narayana; M Sapnakumari; Balladka K Sarojini; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-31

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.