| Literature DB >> 36071962 |
Hanyi Chen1, Shen Li1, Jiali Wang1, Siqi He1, Dong Wang2, Zhaohui Qian3, Dandan Hu4, Fangfang Qi5, Keping Hu6,7, Chenyi Luo1,8, Jianxun Wang1,8.
Abstract
To combat the continued pandemic of COVID-19, multiplex serological assays have been developed to comprehensively monitor the humoral immune response and help to design new vaccination protocols to different SARS-CoV-2 variants. However, multiplex beads and stably transfected cell lines require stringent production and storage conditions, and assays based on flow cytometry is time-consuming and its application is therefore restricted. Here, we describe a phage display system to distinguish the differences of immune response to antigenic domains of multiple SARS-CoV-2 variants simultaneously. Compared with linear peptides, the recombinant antigens displayed on the phage surface have shown some function that requires the correct folding to form a stable structure, and the binding efficiency between the recombinant phage and existing antibodies is reduced by mutations on antigens known to be important for antigen-antibody interaction. By using Phage display mediated immuno-multiplex quantitative PCR (Pi-mqPCR), the binding efficiency between the antibody and antigens of different SARS-CoV-2 variants can be measured in one amplification reaction. Overall, these data show that this assay is a valuable tool to evaluate the humoral response to the same antigen of different SARS-CoV-2 variants or antigens of different pathogens. Combined with high-throughput DNA sequencing technology, this phage display system can be further applied in monitoring humoral immune response in a large population before and after vaccination.Entities:
Keywords: SARS-CoV-2; antibody responses; coronavirus; phage display; variants
Year: 2022 PMID: 36071962 PMCID: PMC9441900 DOI: 10.3389/fmicb.2022.968036
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 6.064
The throughput of common serological assays to SARS-CoV-2.
| Test type | Throughput |
|---|---|
| ELISA | Single detection |
| Lateral flow immunoassay (LFIA) | Single detection |
| Chemiluminescence enzyme immunoassay (CLIA) | Single detection |
| Fluorescence immunoassays (FIA) | Multiple assays |
| Peptide microarrays | High-throughput assay |
| PhIP-Seq | High-throughput assay |
Figure 1Schematic illustration of the polyvalent phage display system and the Pi-mqPCR assay. (A) Construction and synthesis of the recombinant phage. (B) Phage immunoprecipitation. (C) Real-time immuno-PCR and high-throughput DNA sequencing assay.
Primer and probe sequences used in multiplex real-time fluorescent quantitative PCR.
| Primer/probe | Sequence (5′–3′) |
|---|---|
| Forward primer | ACTGCGGCGAGCGGAAAT |
| Reverse primer | GCCACCACTGATTTGAGCG |
| Probe-1 | FAM-AACAACTGGACCGACCG-BHQ1 |
| Probe-2 | CY5-CTGGCTCTGCGTGCTGTGCTC-BHQ2 |
| Probe-3 | ROX-CTCAAACCCCCGCGCGTTCCCC-MGB |
| Probe-4 | VIC-TCCAAGCGCTCGCATCGTGG-BHQ1 |
Figure 2Construction and synthesis of the recombinant phage. (A) Detection of the expression of the myc tag on wild-type M13KO7 and the recombinant phage by Western blotting. (B) The enrichment of the recombinant phage among the antibodies targeted to the spike protein of SARS-CoV-2 and myc tag; ***p < 0.001. (C) The enrichment of the RBD-displaying phage and the wild-type M13KO7 by ACE2. (D) The phage vectors used to express the polyvalent display phage. The values shown are the average of three independent experiments and their standard errors.
Figure 3(A) The binding activity between the recombinant phage with different mutations in the RBD construct and two commercially available anti-RBD antibodies. (B) Schematic drawing of the phage of the phage-displayed RBD construct with different mutations. The values shown are the average of three independent experiments and their standard errors.
Figure 4Pi-mqPCR was used to identify the binding specificity of recombinant phage. (A) Schematic drawing of the Pi-mqPCR. (B,C) Distribution of the phage chromosome that displayed antigens from different viruses (B) and different regions of SARS-CoV-2 (C) following immunoprecipitation with the respective labeled antibodies. The values shown are the average of three independent experiments and their standard errors.
Figure 5Pi-mqPCR assay to explore the enrichment of the recombinant phage-displayed RBD constructs from wild-type SARS-CoV-2 and different variants by a polyclonal antibody (A) and three monoclonal antibodies (B–D). The values shown are the average of three independent experiments and their standard errors.
Figure 6Pi-mqPCR assay to explore the enrichment of the recombinant phage-displayed RBD constructs from wild-type SARS-CoV-2 and different variants by six anti-SARS-CoV-2 RBD nanobodies. The values shown are the average of three independent experiments and their standard errors.