Literature DB >> 36069554

Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.

Bryan T Piatkowski1, Dana L Carper1, Alyssa A Carrell1, I-Min A Chen2, Alicia Clum2, Chris Daum2, Emiley A Eloe-Fadrosh2, Daniel Gilbert3, Gustaf Granath4, Marcel Huntemann2, Sara S Jawdy1, Ingeborg Jenneken Klarenberg5,6, Joel E Kostka7, Nikos C Kyrpides2, Travis J Lawrence1, Supratim Mukherjee2, Mats B Nilsson8, Krishnaveni Palaniappan2, Dale A Pelletier1, Christa Pennacchio2, T B K Reddy2, Simon Roux2, A Jonathan Shaw9, Denis Warshan6, Tatjana Živković10, David J Weston1.   

Abstract

We present 49 metagenome assemblies of the microbiome associated with Sphagnum (peat moss) collected from ambient, artificially warmed, and geothermally warmed conditions across Europe. These data will enable further research regarding the impact of climate change on plant-microbe symbiosis, ecology, and ecosystem functioning of northern peatland ecosystems.

Entities:  

Year:  2022        PMID： 36069554      PMCID： PMC9584203          DOI： 10.1128/mra.00400-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

1.  Genomes OnLine Database (GOLD) v.8: overview and updates.

Authors:  Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Jagadish Chandrabose Sundaramurthi; Janey Lee; Mahathi Kandimalla; I-Min A Chen; Nikos C Kyrpides; T B K Reddy
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

2.  The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.

Authors:  I-Min A Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Neha Varghese; Rekha Seshadri; Simon Roux; Tanja Woyke; Emiley A Eloe-Fadrosh; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

3.  Global change shifts vegetation and plant-parasite interactions in a boreal mire.

Authors:  Magdalena M Wiedermann; Annika Nordin; Urban Gunnarsson; Mats B Nilsson; Lars Ericson
Journal:  Ecology       Date:  2007-02       Impact factor: 5.499

4.  Effects of climate warming on Sphagnum photosynthesis in peatlands depend on peat moisture and species-specific anatomical traits.

Authors:  Vincent E J Jassey; Constant Signarbieux
Journal:  Glob Chang Biol       Date:  2019-09-09       Impact factor: 10.863

5.  DOE JGI Metagenome Workflow.

Authors:  Alicia Clum; Marcel Huntemann; Brian Bushnell; Brian Foster; Bryce Foster; Simon Roux; Patrick P Hajek; Neha Varghese; Supratim Mukherjee; T B K Reddy; Chris Daum; Yuko Yoshinaga; Ronan O'Malley; Rekha Seshadri; Nikos C Kyrpides; Emiley A Eloe-Fadrosh; I-Min A Chen; Alex Copeland; Natalia N Ivanova
Journal:  mSystems       Date:  2021-05-18       Impact factor: 6.496

6.  metaSPAdes: a new versatile metagenomic assembler.

Authors:  Sergey Nurk; Dmitry Meleshko; Anton Korobeynikov; Pavel A Pevzner
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

7.  Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Authors:  Robert M Bowers; Nikos C Kyrpides; Ramunas Stepanauskas; Miranda Harmon-Smith; Devin Doud; T B K Reddy; Frederik Schulz; Jessica Jarett; Adam R Rivers; Emiley A Eloe-Fadrosh; Susannah G Tringe; Natalia N Ivanova; Alex Copeland; Alicia Clum; Eric D Becraft; Rex R Malmstrom; Bruce Birren; Mircea Podar; Peer Bork; George M Weinstock; George M Garrity; Jeremy A Dodsworth; Shibu Yooseph; Granger Sutton; Frank O Glöckner; Jack A Gilbert; William C Nelson; Steven J Hallam; Sean P Jungbluth; Thijs J G Ettema; Scott Tighe; Konstantinos T Konstantinidis; Wen-Tso Liu; Brett J Baker; Thomas Rattei; Jonathan A Eisen; Brian Hedlund; Katherine D McMahon; Noah Fierer; Rob Knight; Rob Finn; Guy Cochrane; Ilene Karsch-Mizrachi; Gene W Tyson; Christian Rinke; Alla Lapidus; Folker Meyer; Pelin Yilmaz; Donovan H Parks; A M Eren; Lynn Schriml; Jillian F Banfield; Philip Hugenholtz; Tanja Woyke
Journal:  Nat Biotechnol       Date:  2017-08-08       Impact factor: 54.908

8.  MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.

Authors:  Dongwan D Kang; Jeff Froula; Rob Egan; Zhong Wang
Journal:  PeerJ       Date:  2015-08-27       Impact factor: 2.984

9.  Rapid loss of an ecosystem engineer: Sphagnum decline in an experimentally warmed bog.

Authors:  Richard J Norby; Joanne Childs; Paul J Hanson; Jeffrey M Warren
Journal:  Ecol Evol       Date:  2019-10-30       Impact factor: 2.912
  9 in total

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