Literature DB >> 36066261

Circular Metagenome-Assembled Genome of Methanobacterium sp. Strain ERen5, a Putative Methanogenic, H2-Utilizing Terrestrial Subsurface Archaeon.

Daniel Lipus1, Zeyu Jia1, Alexander Bartholomäus1, Oliver Burckhardt1, Megan Sondermann1, Dirk Wagner1,2, Jens Kallmeyer1,2.   

Abstract

A circular, single-contig Methanobacterium sp. metagenome-assembled genome (MAG) was recovered from high-CO2 enrichments inoculated with drill core material from the tectonic Eger Rift terrestrial subsurface. Annotation of the recovered MAG highlighted putative methanogenesis genes, providing valuable information on archaeal activity in the deep biosphere.

Entities:  

Year:  2022        PMID： 36066261      PMCID： PMC9584291          DOI： 10.1128/mra.00676-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  12 in total

1.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

2.  Methanobacterium paludis sp. nov. and a novel strain of Methanobacterium lacus isolated from northern peatlands.

Authors:  Hinsby Cadillo-Quiroz; Suzanna L Bräuer; Noah Goodson; Joseph B Yavitt; Stephen H Zinder
Journal:  Int J Syst Evol Microbiol       Date:  2014-01-21       Impact factor: 2.747

3.  Methanobacterium lacus sp. nov., isolated from the profundal sediment of a freshwater meromictic lake.

Authors:  Guillaume Borrel; Keith Joblin; Annie Guedon; Jonathan Colombet; Vincent Tardy; Anne-Catherine Lehours; Gérard Fonty
Journal:  Int J Syst Evol Microbiol       Date:  2011-09-02       Impact factor: 2.747

4.  Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette.

Authors:  Felix Beulig; Verena B Heuer; Denise M Akob; Bernhard Viehweger; Marcus Elvert; Martina Herrmann; Kai-Uwe Hinrichs; Kirsten Küsel
Journal:  ISME J       Date:  2014-09-12       Impact factor: 10.302

5.  Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Authors:  Justin Kuczynski; Jesse Stombaugh; William Anton Walters; Antonio González; J Gregory Caporaso; Rob Knight
Journal:  Curr Protoc Bioinformatics       Date:  2011-12

6.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

7.  Microbial Signatures in Deep CO2-Saturated Miocene Sediments of the Active Hartoušov Mofette System (NW Czech Republic).

Authors:  Qi Liu; Karsten Adler; Daniel Lipus; Horst Kämpf; Robert Bussert; Birgit Plessen; Hans-Martin Schulz; Patryk Krauze; Fabian Horn; Dirk Wagner; Kai Mangelsdorf; Mashal Alawi
Journal:  Front Microbiol       Date:  2020-12-14       Impact factor: 5.640

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

9.  JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.

Authors:  Michael Richter; Ramon Rosselló-Móra; Frank Oliver Glöckner; Jörg Peplies
Journal:  Bioinformatics       Date:  2015-11-16       Impact factor: 6.937

10.  MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.

Authors:  Dongwan D Kang; Feng Li; Edward Kirton; Ashleigh Thomas; Rob Egan; Hong An; Zhong Wang
Journal:  PeerJ       Date:  2019-07-26       Impact factor: 2.984
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