Literature DB >> 36066251

Draft Genomes of Methanocalculus taiwanensis P2F9704aT and Methanocalculus chunghsingensis K1F9705bT, Hydrogenotrophic Methanogens Belonging to the Family Methanocalculaceae.

Sheng-Chung Chen1,2,3, Shu-Jung Lai4,5, Yi-Ting You3, Chao-Jen Shih6, Yen-Chi Wu6, Chih-Hung Wu2,7, Ching-Hua Liao2.   

Abstract

The family Methanocalculaceae comprises hydrogen- and formate-utilizing methanogens. Here, we report two additional draft genome sequences of Methanocalculaceae, those of Methanocalculus taiwanensis P2F9704aT (equivalent to BCRC 16182T and DSM 14663T) and Methanocalculus chunghsingensis K1F9705bT (equivalent to DSM 14646T and OCM 772T), which were selected for further species delineation and comparative genomic analyses.

Entities:  

Year:  2022        PMID: 36066251      PMCID: PMC9584218          DOI: 10.1128/mra.00792-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN: 2576-098X


  15 in total

1.  A general method of isolating high molecular weight DNA from methanogenic archaea (archaebacteria).

Authors:  K F Jarrell; D Faguy; A M Hebert; M L Kalmokoff
Journal:  Can J Microbiol       Date:  1992-01       Impact factor: 2.419

2.  Methanofollis formosanus sp. nov., isolated from a fish pond.

Authors:  Sue-Yao Wu; Sheng-Chung Chen; Mei-Chin Lai
Journal:  Int J Syst Evol Microbiol       Date:  2005-03       Impact factor: 2.747

3.  Methanocalculus pumilus sp. nov., a heavy-metal-tolerant methanogen isolated from a waste-disposal site.

Authors:  K Mori; H Yamamoto; Y Kamagata; M Hatsu; K Takamizawa
Journal:  Int J Syst Evol Microbiol       Date:  2000-09       Impact factor: 2.747

4.  Methanoculleus taiwanensis sp. nov., a methanogen isolated from deep marine sediment at the deformation front area near Taiwan.

Authors:  Chieh-Yin Weng; Sheng-Chung Chen; Mei-Chin Lai; Sue-Yao Wu; Saulwood Lin; Tsanyao F Yang; Po-Chun Chen
Journal:  Int J Syst Evol Microbiol       Date:  2015-01-09       Impact factor: 2.747

5.  In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.

Authors:  Alessandra Carattoli; Ea Zankari; Aurora García-Fernández; Mette Voldby Larsen; Ole Lund; Laura Villa; Frank Møller Aarestrup; Henrik Hasman
Journal:  Antimicrob Agents Chemother       Date:  2014-04-28       Impact factor: 5.191

6.  Phylogenetic analysis of methanogenic enrichment cultures obtained from Lonar Lake in India: isolation of Methanocalculus sp. and Methanoculleus sp.

Authors:  Venkata Prasad Surakasi; Aijaz Ahmad Wani; Yogesh S Shouche; Dilip R Ranade
Journal:  Microb Ecol       Date:  2007-05-05       Impact factor: 4.552

7.  Methanocalculus taiwanensis sp. nov., isolated from an estuarine environment.

Authors:  Mei-Chin Lai; Sheng-Chung Chen; Chin-Ming Shu; Ming-Shing Chiou; Chia-Chi Wang; Ming-Jen Chuang; Tong-Yung Hong; Chia-Chi Liu; Li-Jane Lai; Jack Jay Hua
Journal:  Int J Syst Evol Microbiol       Date:  2002-09       Impact factor: 2.747

8.  Methanocalculus chunghsingensis sp. nov., isolated from an estuary and a marine fishpond in Taiwan.

Authors:  Mei-Chin Lai; Chih-Chien Lin; Ping-Hung Yu; Yi-Feng Huang; Sheng-Chung Chen
Journal:  Int J Syst Evol Microbiol       Date:  2004-01       Impact factor: 2.747

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

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