Literature DB >> 36063508

Explainability in Graph Neural Networks: A Taxonomic Survey.

Hao Yuan, Haiyang Yu, Shurui Gui, Shuiwang Ji.   

Abstract

Deep learning methods are achieving ever-increasing performance on many artificial intelligence tasks. A major limitation of deep models is that they are not amenable to interpretability. This limitation can be circumvented by developing post hoc techniques to explain predictions, giving rise to the area of explainability. Recently, explainability of deep models on images and texts has achieved significant progress. In the area of graph data, graph neural networks (GNNs) and their explainability are experiencing rapid developments. However, there is neither a unified treatment of GNN explainability methods, nor a standard benchmark and testbed for evaluations. In this survey, we provide a unified and taxonomic view of current GNN explainability methods. Our unified and taxonomic treatments of this subject shed lights on the commonalities and differences of existing methods and set the stage for further methodological developments. To facilitate evaluations, we provide a testbed for GNN explainability, including datasets, common algorithms and evaluation metrics. Furthermore, we conduct comprehensive experiments to compare and analyze the performance of many techniques. Altogether, this work provides a unified methodological treatment of GNN explainability and a standardized testbed for evaluations.

Entities:  

Year:  2022        PMID: 36063508     DOI: 10.1109/TPAMI.2022.3204236

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   9.322


  3 in total

1.  Scoring Functions for Protein-Ligand Binding Affinity Prediction using Structure-Based Deep Learning: A Review.

Authors:  Rocco Meli; Garrett M Morris; Philip C Biggin
Journal:  Front Bioinform       Date:  2022-06-17

2.  EdgeSHAPer: Bond-centric Shapley value-based explanation method for graph neural networks.

Authors:  Andrea Mastropietro; Giuseppe Pasculli; Christian Feldmann; Raquel Rodríguez-Pérez; Jürgen Bajorath
Journal:  iScience       Date:  2022-08-30

3.  Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks.

Authors:  Takaki Yamamoto; Katie Cockburn; Valentina Greco; Kyogo Kawaguchi
Journal:  PLoS Comput Biol       Date:  2022-09-06       Impact factor: 4.779

  3 in total

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