| Literature DB >> 36062198 |
Mosleh M Abomughaid1, Mohammed S Nofal2, Khaled I Ghaleb1, Mohamed G Seadawy3, Miral G AbdEl-Wahab2, Alaa S Hegazy4,5, Doaa A Ghareeb5,6.
Abstract
Objective: The study purpose was to compare the anti- novel coronavirus disease 2019 (COVID-19) property of chlorogenic acid (CGA) and Zinc oxide nanoparticles (ZnO-NP) with the new valid synthesized complex of ZnO /CGA-NPs.Entities:
Keywords: ACE2, angiotensin-converting enzyme 2; CGA, chlorogenic acids; COVID 19, coronavirus disease 2019; HCQ, hydroxychloroquine; PLpro, papain-like proteinase; Papain-like proteinase; Plaque assay; RBD, spike protein-receptor binding domain; RNA dependent RNA polymerase; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2; VeroE6 toxicity; ZnO, Zinc oxide
Year: 2022 PMID: 36062198 PMCID: PMC9425706 DOI: 10.1016/j.jksus.2022.102296
Source DB: PubMed Journal: J King Saud Univ Sci ISSN: 1018-3647
Fig. 1The UV–vis absorption spectrum of (A) CGA vs ZnO, (B) CGA vs ZnO/CGA, (C) ZnO vs CGA and ZnO/CGA, and (D) effect of excess CGA to constant ZnO-Nps.
Fig. 2(A) The Fourier transform infrared (FTIR) spectrum of ZnO-Nps, CGA, and ZnO/CGA complex and (B and C, the magnification power was 100 nm) TEM and analysis of ZnO-NPs and ZnO/CGA and (D) The proposed structure of ZnO/CGA complex.
Fig. 3Molecular docking and LigPlus analysis illustrating the interaction between ZnO-NPs, CGA, and ZnO/CGA and the studied proteins (papain-like proteinase, spike protein, and spike protein receptor-binding domain).
Docking results of the tested compounds with papain-like proteinase, spike protein, and spike protein receptor-binding domain.
| Parameters | CGA | ZnO | ZnO/ CGA | Reference inhibitor |
|---|---|---|---|---|
| pH | 6.75 | |||
| PAPAIN-LIKE PROTEINASE | ||||
| Name of Reference inhibitor | ||||
| Hydrogen bond | LIG 1O-THR 75.A OG1 | No hydrogen bond | LIG 1O- Gln 270. A N | LIG 1 N /A GLU 168 OE1 no hydrogen 2.647 N/A |
| Binding energy | −10.58 | −2.77 | −17.8 | −3.98 |
| Estimated Ki | 17.49 nM | 9.28 mM | 89.10 fM | 1.21 mM |
| Reference RMSD | 36.54 | 32.56 | 44.24 | 62.53 |
| SPIKE PROTEIN | ||||
| Name of Reference inhibitor | ||||
| Hydrogen bond | LIG 1O-MET 731.A O | LIG1O-ASP775.C OD1 | No hydrogen bond | LIG O/Gln 314 N |
| Binding energy | −9.77 | −2.74 | −15.55 | −16.68 |
| Estimated Ki | 69.39 nM | 9880 uM | 4.01 pM | 595.11 fM |
| Reference RMSD | 385.4 | 385.03 | 378.33 | 263.02 |
| SPIKE RECEPTOR-BINDING DOMAIN | ||||
| Name of Reference inhibitor | ||||
| Hydrogen bond | LIG 1O-GLU 208.A O | LIGO-TYR183.A OH | LIG 1O-LEU 91.A O | ASN 210 N---LIG O |
| Binding energy | −10.34 | −2.31 | −10.99 | −12.17 |
| Estimated Ki | 26.30 nM | 20,180 uM | 8.82 nM | 1.19 nM |
| Reference RMSD | 50.17 | 66.63 | 55.6 | 60.26 |
The inhibitory/binding effect of the tested compound on papain-like proteinase, Spike protein receptor binding domine and ACE2.
| Groups | Concentration µg/mL | PLpro inhibition % | SP- RBD-ACE2 complex formation fold | ACE-2 Binding % |
|---|---|---|---|---|
| ZnO | 104 | 71.06 ± 1.3e | 20.25 ± 0.5e | 16.4 ± 0.9d |
| 52 | 62.2 ± 0.90d | 13.375 ± 0.3d | 15.6 ± 0.7d | |
| 26 | 45.6 ± 1.1c | 6.625 ± 0.2c | 13.1 ± 1.3c | |
| 13 | 35.31 ± 0.77b | 3.5 ± 0.3b | 10.7 ± 0.8b | |
| 6.5 | 22.5 ± 0.12a | 0.5 ± 0.02a | 8.2 ± 0.08a | |
| IC50 (µg/mL) | ||||
| CGA | 1000 | 14.5 ± 0.9c | 14.25 ± 0.5d | 18.3 ± 1.2b |
| 500 | 13.6 ± 1.1c | 13.875 ± 0.3d | 18.1 ± 2.1b | |
| 250 | 11.2 ± 0.7b | 4.375 ± 0.1c | 17.2 ± 1.1ab | |
| 125 | 10.6 ± 1.01b | 1 ± 0.01b | 16.4 ± 1.1a | |
| 62.5 | 6.9 ± 0.4a | 0.75 ± 0.002a | 14.8 ± 1.2a | |
| IC50 (µg/mL) | ||||
| ZnO/CGA | 156.5 | 80.3 ± 1.9d | 4.75 ± 0.2e | 24.2 ± 0.1e |
| 78.25 | 65.1 ± 2.8c | 1.625 ± 0.07d | 17.1 ± 0.2d | |
| 39.215 | 50.7 ± 3.4b | 0.625 ± 0.003c | 15.6 ± 0.1c | |
| 19.563 | 45.6 ± 2.1b | 0.375 ± 0.007b | 11.5 ± 0.07b | |
| 9.782 | 38.6 ± 1.2a | 0.01 ± 0.001a | 9.2 ± 0.05a | |
| IC50 (µg/mL) | ||||
| HCQ | 200 | 37 ± 0.42e | 0.5 ± 0.001d | 15.6 ± 1.4b |
| 100 | 30 ± 0.23d | 0.5 ± 0.001d | 14.8 ± 0.9b | |
| 50 | 22.5 ± 0.15c | 0.375 ± 0.003c | 14.5 ± 0.8b | |
| 25 | 11.2 ± 0.39b | 0.25 ± 0.001b | 13.8 ± 1.1b | |
| 12.5 | 8.1 ± 0.74a | 0.125 ± 0.007a | 9.02 ± 0.5a | |
| IC50 (µg/mL) |
The results are mean ± SD of three replicas., means in the same column with different superscripts letters are significantly different at p < 0.05, where a is the lowest means and d is the highest one.
Antiviral Activity of the tested compounds by using in vitro Vero E6 toxicity and plaque reduction assay against SARS-CoV2.
| Vero E6 IC50 (µg/mL) | Reduction % | Dosage (µg/mL) | Anti-SARS CoV2 EC50 (µg/mL) | EC50/IC50 % | |
|---|---|---|---|---|---|
| CGA | 23.6 ± 1.2d | 76 ± 1.9b | 15.4 ± 0.21c | 4.9 ± 0.021d | 21 ± 0.9b |
| ZnO | 12.6 ± 0.42c | 67.5 ± 1.2a | 5.5 ± 0.41b | 4.11 ± 0.012c | 33 ± 1.2d |
| ZnO/CGA | 1.65 ± 0.003a | 80 ± 3.4c | 1.56 ± 0.0002a | 0.312 ± 0.002a | 19 ± 0.78a |
| HCQ | 1.4 ± 0.1b | 76 ± 2.5b | 1.1 ± 0.13a | 0.385 ± 0.01b | 28 ± 1.7c |
The results are mean ± SD of three replicas., means in the same column with different superscripts letters are significantly different at p < 0.05, where a is the lowest means and d is the highest one.
Effect of tested compounds on SARS-CoV2 gene expression and protein levels.
| Groups | Concentration (µg/mL) | ORF gene expression | ORF gene downregulation % | E-gene expression | E-gene downregulation % | RdRp expression | RdRp down regulation % | E protein inhibition % | Spike protein inhibition % |
|---|---|---|---|---|---|---|---|---|---|
| ZnO | 5.48 | 0.15 ± 0.001a | 85.29 ± 1.1c | 0.73E-05 ± 0.1 E-06a | 99.99 ± 3.6b | 0.001 ± 0.0001a | 99.9 ± 3.8a | 85.71 ± 7.1c | 83.33 ± 3.1d |
| 2.74 | 0.18 ± 0.002b | 81.96 ± 1.6c | 3.36 E-05 ± 0.1 E-06b | 99.99 ± 1.2b | 0.018 ± 0.005b | 98.2 ± 4.1a | 78.57 ± 3.6b | 88.89 ± 2.1c | |
| 1.37 | 0.37 ± 0.001c | 62.63 ± 1.4b | 5.36 E-05 ± 0.1 E-06c | 99.99 ± 3.1b | 0.019 ± 0.0002b | 98.1 ± 3.1a | 71.43 ± 1.8b | 76.67 ± 3.6b | |
| 0.685 | 0.47 ± 0.01d | 53.35 ± 0.9a | 7.36E-05 ± 0.1 E-06d | 89.78 ± 2.1a | 0.028 ± 0.0001c | 97.2 ± 2.3a | 64.29 ± 2.4a | 67.78 ± 1.8a | |
| IC50 | µg/mL | ||||||||
| CGA | 10 | 0.04 ± 0.0001a | 95.99 ± 2.8d | 1 E-04 ± 0.1 E-04a | 99.99 ± 1.8a | 0.001 ± 0.1 E-05b | 99.89 ± 3.9a | 92.5 ± 7.9d | 91.66 ± 3.2d |
| 5 | 0.096 ± 0.0001b | 90.33 ± 3.1c | 2 E-04 ± 0.1 E-04b | 99.97 ± 1.6a | 0.0011 ± 1.1 E-05b | 99.89 ± 5.2a | 87.5 ± 6.4c | 83.33 ± 1.3c | |
| 2.5 | 0.11 ± 0.002c | 88.88 ± 2.1b | 2 E-04 ± 0.1 E-04b | 99.97 ± 1.7a | 0.0029 ± 1.1 E-06c | 99.715 ± 1.2a | 75 ± 4.8b | 50 ± 0.9b | |
| 1.25 | 0.13 ± 0.001d | 87.7 ± 1.1a | 2 E-03 ± 0.1 E-04d | 99.8 ± 0.9a | 0.0033 ± 0.1 E-05d | 99.67 ± 1.4a | 50 ± 3.6a | 25 ± 0.8a | |
| IC 50 | µg/mL | ||||||||
| ZnO/CGA | 1.565 | 2.5E-05 ± 0.00001a | 99.99 ± 1.9d | 0.003 ± 0.0001a | 99.7 ± 1.4d | 1.52E-05 ± 0.1E-06a | 99.99 ± 1.8b | 96 ± 7.8c | 93.3 ± 3.6d |
| 0.783 | 0.015 ± 0.0001b | 98.5 ± 2.8c | 0.078 ± 0.0001b | 92.2 ± 0.1c | 0.001 ± 2.3 E-06b | 99.89 ± 7.8b | 80 ± 6.3b | 80 ± 2.7c | |
| 0.391 | 0.88 ± 0.0001c | 11.7 ± 0.03b | 0.1 ± 0.001c | 90 ± 0.2b | 0.001 ± 1.1 E-06b | 99.89 ± 3.7b | 40 ± 1.5a | 53.3 ± 3.1b | |
| 0.195 | 0.93 ± 0.001d | 6.7 ± 0.01a | 0.14 ± 0.001d | 86.03 ± 1.8a | 0.234 ± 0.001b | 76.67 ± 6.1a | 40 ± 2.1a | 40 ± 0.9a | |
| IC 50 | µg/mL |
The results are mean ± SD of three replicas., means in the same column with different superscripts letters are significantly different at p < 0.05, where a is the lowest means and e is the highest one.
The antioxidants and RBCs and PBMCs Cytotoxic IC50 of tested compounds.
| RBC | PBMC | WBC | Antioxidants | |
|---|---|---|---|---|
| IC50 (µg/mL) | ||||
| CGA | 370.83 ± 12.3c | 235 ± 17.8c | 655 ± 12.5d | 250 ± 10.8b |
| ZnO | 41.67 ± 2.31b | 64 ± 0.5b | 25 ± 1.1b | 439 ± 18.9d |
| ZnO/CGA | 372.15 + 9.4c | 230 + 2.01c | 395 ± 3.5c | 78 ± 1.3a |
| HCQ | 24.55 ± 0.8a | 53.2 ± 0.05a | 20 ± 1.23a | 352 ± 17.8c |
The results are mean ± SD of three replicas., means in the same column with different superscripts letters are significantly different at p < 0.05, where a is the lowest means and d is the highest one.
Antimicrobial activity using agar well diffusion and turbidity assays.
| Agar well diffusion assay | Turbidity assay | |||||||
|---|---|---|---|---|---|---|---|---|
| Concentrations of the tested compounds | Inhibition zone diameter (mm)** | MIC (µg/mL) | Percent of inhibition (%) | MIC (µg/mL) | ||||
| 100 % | 50 % | 25 % | 100 % | 50 % | 25 % | |||
| Gram negative Bacteria | ||||||||
| ZnO-NPs | 11 | ND | ND | 104 | 65.87 | 61.84 ± 0.0 | 44.13 ± 0.0 | 26 |
| CGA | ND | ND | ND | ND | 87.38 | 71.32 ± 0.0 | 58.21 ± 0.0 | 13 |
| ZnO/CGA | 35 | ND | ND | 104 | 88.23 | 77.66 ± 0.0 | 65.11 ± 0.0 | 26 |
| Positive control (Amoxicillin 0.1 %) | 35 | 92.48 | ||||||
| Gram positive Bacteria | ||||||||
| ZnO-NPs | 17 | ND | ND | 104 | 87.77 | 33.24 ± 0.0 | 8.09 ± 0.0 | 26 |
| CGA | ND | ND | ND | ND | 61.34 | 59.81 ± 0.0 | 40.37 ± 0.0 | 13 |
| ZnO/CGA | ND | ND | ND | ND | 74.39 | 61.88 ± 0.0 | 50.95 ± 0.0 | 26 |
| Positive control (Amoxicillin 0.1 %) | 25 | 95.51 | ||||||
| ZnO-NPs | 12 | ND | ND | 104 | 68.31 | 50.85 ± 0.0 | 41.49 ± 0.0 | 26 |
| CGA | ND | ND | ND | ND | 68.85 | 60.12 ± 0.0 | 41.53 ± 0.0 | 13 |
| ZnO/CGA | 32 | 20 | ND | 52 | 69.95 | 63.93 ± 0.0 | 59.65 ± 0.0 | 26 |
| Positive control (Amoxicillin 0.1 %) | 35 | 80.98 | ||||||
| Yeast | ||||||||
| ZnO-NPs | 30 | 25 | 20 | 26 | 25.00 | 23.44 ± 0.0 | 20.31 ± 0.0 | 26 |
| CGA | ND | ND | ND | ND | 34.26 | 33.04 ± 0.0 | 17.52 ± 0.0 | 13 |
| ZnO/CGA | ND | ND | ND | ND | 83.15 | 65.08 ± 0.0 | 63.30 ± 0.0 | 26 |
| Positive control (Fluconazole 0.1 %) | 40 | 94.14 | ||||||
*Diameter includes 5 mm well diameter.
- ND; Not detected.
- MIC; Minimum inhibition concentration.
Effect of the tested compounds on HCQ induced RBC hemolysis and WBC cytotoxicity.
| Compounds | RBC hemolysis | WBC cytotoxicity | ||
|---|---|---|---|---|
| Concentration (µg/mL) | Hemolytic (%) | Concentration (µg/mL) | Viability (%) | |
| ZnO | 4.1 | 5.88 ± 0.002e | 2.5 | 53 ± 1.3c |
| CGA | 37 | 3.52 ± 0.01a | 65.5 | 57 ± 1.3c |
| ZnO/CGA | 37 | 4.08 ± 0.03c | 19.5 | 57 ± 2.8c |
| +ve Control (HCQ) | 24.5 | 56 ± 1.3 g | 20 | 6 ± 0.04a |
| HCQ + ZnO | 24.5 + 4.1 | 9.6 ± 0.002f | 200 + 2.5 | 34 ± 2.3b |
| HCQ + CGA | 24.5 + 37 | 3.76 ± 0.05b | 200 + 62.5 | 55 ± 3.7c |
| HCQ + ZnO/CGA | 24.5 + 37 | 4.32 ± 0.07d | 200 + 19.5 | 58 ± 2.9c |
The results are mean ± SD of three replicas., means in the same column with different superscripts letters are significantly different at p < 0.05, where a is the lowest means and g is the highest one. Note, the concentration of ZnO-NPs, CGA and ZnO/CGA were 1/10 of IC50s while HCQ concentration was IC50.