| Literature DB >> 36051699 |
Jun Wang1,2, Xinrong Sun2, Lianying Jiao1, Zhengtao Xiao1, Farooq Riaz3, Yufeng Zhang2, Pengfei Xu2, Ruiqing Liu2, Tiantian Tang2, Meiqi Liu2, Dongmin Li1.
Abstract
Objective : Our study aims to summarize and analyze the clinical characteristics of transient infantile hypertriglyceridemia (HTGTI) and variants in the glycerol-3-phosphate dehydrogenase 1 (GPD1) gene and the effect of HTGTI on the protein structure of GPD1.Entities:
Keywords: glycerol-3-phosphate dehydrogenase 1 (GPD1); hepatic steatosis; hepatomegaly; hypertriglyceridemia; transient infantile hypertriglyceridemia (HTGTI)
Year: 2022 PMID: 36051699 PMCID: PMC9424621 DOI: 10.3389/fgene.2022.916672
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
FIGURE 1The flow diagram of the research process.
FIGURE 2Radio findings in proband with glycerol-3-phosphate dehydrogenase 1 (GPD1) mutation from our hospital. (A) at the age of 1 month 26 days: hepatosplenomegaly, thicker parenchyma echo spots, slightly coarse gallbladder wall, and gallbladder contraction rate was less than 50% after 1 h of breastfeeding. (B) at the age of 2 months 4 days: hepatosplenomegaly, thinner parenchyma echo spots, strengthened echo, thicker and coarse gallbladder wall, and liver tissue elastic modulus was approximately 15 kPa. (C) at the age of 7 months 10 days: hepatosplenomegaly, stronger and diffused echo, and liver tissue elastic modulus was approximately 17 kPa. (D) at the age of 1 year and 4 months: fatty liver change; no obvious abnormality of gallbladder, pancreas, liver, and spleen; liver tissue elastic modulus was approximately 14.3 kPa.
GPD1 gene variant and phenotype of 31 patients with HTGTI.
| References | Descent | Number of patients | c.DNA variant | Hom/Het | Amino acid change | Variant region | Variant type | Main phenotype of pathogenic variant | |
|---|---|---|---|---|---|---|---|---|---|
| Maternal | Paternal | ||||||||
|
| Israeli-Arab | 10 | c.361-1G > C | c.361-1G > C | Homozygous | Ile119fsX94 | Intro 3 | Splicing variant | Hepatomegaly, fatty liver, HTG, 4/10 had short stature, vomit, slow weight gain, elevated ALT + GGT |
|
| Caucasian | 1 | c.686G > A | a small deletion | Compound heterozygous | R229Q | Exon 6 | Missense variant | Hepatomegaly, fatty liver, HTG, maldevelopment, vomit, elevated transaminase + GGT + TC [11] |
|
| Arab-Muslim | 1 | c.806G > A | c.806G > A | Homozygous | Arg269Gln | Exon 6 | Missense variant | Hepatomegaly, fatty liver, HTG, elevated transaminase, recurrent fasting hypoglycemia |
| NA | 1 | c.361-1G > C | c.361-1G > C | Homozygous | Ile119fsX94 | Intro 3 | Splicing variant | Hepatomegaly, fatty liver, HTG, elevated transaminase + GGT + ALP | |
| Italian | 1 | c.640T > C | c.640T > C | Homozygous | Cys214Arg | Exon 6 | Missense variant | Hepatosplenomegaly, fatty liver, HTG, elevated transaminase + total bile acid (TBA), urine dicarboxylic acids, minimal lesion nephropathy | |
| Italian | 1 | c.640T > C | c.640T > C | Homozygous | Cys214Arg | Exon 6 | Missense variant | Hepatomegaly, fatty liver, HTG, elevated transaminase + TC + TBA | |
|
| Chinese | 1 | c.820G > A | c.220–2A > G | Compound heterozygous | Ala274Thr | Exon 6 and 3 | Missense variant | Obesity, fatty liver, short stature, insulin resistance, dermal abnormalities, elevated dehydroepiandrosterone sulfate and lipoprotein-α(LP-α), normal lipid |
|
| Chinese | 1 | c.523C > T | c.523C > T | Homozygous | Q175* | Exon 5 | Nonsense variant | Hepatomegaly, fatty liver, HTG, elevated transaminase + GGT + TBA |
|
| Russian | 1 | c.895G > A | c.895G > A | Homozygous | G299R | Exon 7 | Missense variant | Hepatomegaly, fatty liver, cirrhosis, HTG, elevated transaminase + TBA |
|
| Chinese | 1 | c.901G > T | a short deficiency | Compound heterozygous | E301X | Exon 7 | Nonsense variant | Hepatomegaly, fatty liver, jaundice, cirrhosis, elevated transaminase + GGT + TBA, urine dicarboxylic acids |
|
| Chinese | 1 | c.901G > T | c.931C > T | Heterozygous | E301X + Q311X | Exon 7 | Nonsense variant | Hepatomegaly, HTG, elevated transaminase |
|
| Indian | 1 | c.500G > A | c.500G > A | Homozygous | Gly167Asp | Exon 5 | Missense variant | abdominal distention, Hepatomegaly, HTG, slight Splenomegaly, elevated ALP |
|
| Romani | 9 | c.895G > A | c.895G > A | Homozygous | Gly299Arg | Exon 7 | Missense variant | 9 of 10 had hepatomegaly, elevated transaminase, low-normal growth; 2 had mild repeated hypoglycemia |
| Palestinian Arab | 1 | c.116G > A | c.116G > A | Homozygous | Trp39* | Exon 2 | Nonsense variant | ||
Items: HTG, hypertriglyceridemia; ALT, alanine aminotransferase; GGT, gamma-glutamyl transpeptidase; TC, total cholesterol; ALP, alkaline phosphatase; TBA, total bile acid.
Differential analysis of TC, TCHO, and ALT in different age groups. Significant differences existed in TG and TCHO in different age groups (P < 0.05), but there were no statistical differences in ALT between four groups (P > 0.05) (a, b, c, and d are used to represent the statistical difference between groups with the same superscript letter).
| Items | subgroup | Median/mean | H-value |
|
|---|---|---|---|---|
| TG | ≤6 months | 5.85 (4.16, 9.33)a | 22.023 | 0.000 |
| 7–12 months | 2.92 (2.05, 3.73)a | |||
| 13 months to 6 years | 2.28 (1.64, 2.93) ab | |||
| >6 years | 3.27 (2.07, 4.86) ab | |||
| TCHO | ≤6 months | 3.30 (2.82, 4.46)c | 17.767 | 0.001 |
| 7–12 months | 2.75 (2.56, 4.01)d | |||
| 13 months to 6 years | 4.95 (3.84, 5.47) | |||
| >6 years | 6.28 (4.89, 6.90) cd | |||
| ALT | ≤6 months | 107.50 (80.5, 156.25) | 5.35 | 0.148 |
| 7–12 months | 92.50 (54.00, 143.75) | |||
| 13 months to 6 years | 71.50 (48.25, 91.25) | |||
| >6 years | 87.5 (54.00, 108.00) |
FIGURE 3Distribution of serum triglyceride (TG), TCHO, and alanine aminotransferase (ALT) in different age groups of patients with transient infantile hypertriglyceridemia (HTGTI). The boxplots showed median and interquartile level values of TC, TCHO, and ALT in the four age groups. (A) statistical differences in TG were shown in group ≤ 6months compared with the other three groups, and group 13 months to 6 years with group >6 years (P < 0.05). (B) significant differences in TCHO were observed in group ≤6 months compared with group 13 months to 6 years and group >6 years, and group 7–12 months with group 6 years (all P < 0.05). (C) there were no significant differences in serum ALT among the four groups (all P > 0.05).
FIGURE 4Curve fitting of serum triglyceride (TG) changing trend with age in patients with transient infantile hypertriglyceridemia (HTGTI). Restricted cubic spline (RCS) with four knots was used to model the association of serum TG with age. The curve shows a good simulation of the correlation between this binary (p < 0.001). The TG level decreased sharply from the peak point in the early age of infants to the normal value (1.7 mmol/L) but rebounded during follow-up, especially after approximately 50 months old.
FIGURE 5Schematic diagram and mutation sites of glycerol-3-phosphate dehydrogenase 1 (GPD1) gene in transient infantile hypertriglyceridemia (HTGTI) patients. The human GPD1 contains eight exons and encodes a protein consisting of 349 amino acid residues. This image illustrates the spectrum of GPD1 mutation sites associated with HTGTI from the reported cases, marked in the lollipop style, including 10 mutation sites on exons and 2 on introns. This spectrum was generated using illustrator for biological sequences (IBS).
FIGURE 6Schematic diagram of protein structure of mutation loci of the glycerol-3-phosphate dehydrogenase 1 (GPD1) gene. This diagram shows the location of the GPD1 missense mutation sites in the protein structure (dimer) in patients with transient infantile hypertriglyceridemia (HTGTI): it mainly exists in the dimer binding surface (R229Q), active site (R269Q), helical bundle (C214R, A274T), near active site (Q299R), and β-folding (G167D). These protein structures of GPD1 were drawn using PyMOL software.
FIGURE 7Stimulation diagram of amino acid/protein three-dimensional structure changes caused by missense variants of GPD1 gene. They exist in the β-folding [(A). Gly167Asp], helical bundle [(B). Cys214Arg and (E). Ala274Thr], the dimer binding surface [(C). Arg229Gln], active site [(D). Arg269Gln and (F). Gly299Arg]. We can see these tertiary structural changes in the spatial strcture of amino acid disability before and after missense variants at these sites. This picture was drawn using PyMOL software.