Literature DB >> 36047780

Complete Genome Sequence of Campylobacter coli Strain P4581, a Hybrid Carrying Campylobacter jejuni Genomic Content, Isolated from Rhesus Monkey, Macaca mulatta.

Sung Guk Kim1, Christine V Summage-West1, Lillie M Sims1, Leihong Wu2, JaeHyun Kim2, Seongwon Nho3, Steven L Foley3.   

Abstract

Campylobacter coli is a leading bacterial cause of human gastroenteritis. We reported the circularized 1.8-Mbp complete genome of MLST type 1055 C. coli strain P4581 isolated from a rhesus monkey, Macaca mulatta, hybridizing Illumina short- and Nanopore long-reads.

Entities:  

Year:  2022        PMID： 36047780      PMCID： PMC9583788          DOI： 10.1128/mra.00847-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  7 in total

1.  RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.

Authors:  Wenjun Li; Kathleen R O'Neill; Daniel H Haft; Michael DiCuccio; Vyacheslav Chetvernin; Azat Badretdin; George Coulouris; Farideh Chitsaz; Myra K Derbyshire; A Scott Durkin; Noreen R Gonzales; Marc Gwadz; Christopher J Lanczycki; James S Song; Narmada Thanki; Jiyao Wang; Roxanne A Yamashita; Mingzhang Yang; Chanjuan Zheng; Aron Marchler-Bauer; Françoise Thibaud-Nissen
Journal:  Nucleic Acids Res       Date:  2020-12-03       Impact factor: 16.971

Review 2.  The evolution of Campylobacter jejuni and Campylobacter coli.

Authors:  Samuel K Sheppard; Martin C J Maiden
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-06-22       Impact factor: 10.005

3.  Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland.

Authors:  Samuel K Sheppard; John F Dallas; Daniel J Wilson; Norval J C Strachan; Noel D McCarthy; Keith A Jolley; Frances M Colles; Ovidiu Rotariu; Iain D Ogden; Ken J Forbes; Martin C J Maiden
Journal:  PLoS One       Date:  2010-12-15       Impact factor: 3.240

4.  Mash: fast genome and metagenome distance estimation using MinHash.

Authors:  Brian D Ondov; Todd J Treangen; Páll Melsted; Adam B Mallonee; Nicholas H Bergman; Sergey Koren; Adam M Phillippy
Journal:  Genome Biol       Date:  2016-06-20       Impact factor: 13.583

5.  Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

Authors:  Alice R Wattam; James J Davis; Rida Assaf; Sébastien Boisvert; Thomas Brettin; Christopher Bun; Neal Conrad; Emily M Dietrich; Terry Disz; Joseph L Gabbard; Svetlana Gerdes; Christopher S Henry; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Eric K Nordberg; Gary J Olsen; Daniel E Murphy-Olson; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; Veronika Vonstein; Andrew Warren; Fangfang Xia; Hyunseung Yoo; Rick L Stevens
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

6.  Kraken: ultrafast metagenomic sequence classification using exact alignments.

Authors:  Derrick E Wood; Steven L Salzberg
Journal:  Genome Biol       Date:  2014-03-03       Impact factor: 13.583

7.  Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential.

Authors:  Julia C Golz; Lennard Epping; Marie-Theres Knüver; Maria Borowiak; Felix Hartkopf; Carlus Deneke; Burkhard Malorny; Torsten Semmler; Kerstin Stingl
Journal:  Sci Rep       Date:  2020-02-28       Impact factor: 4.379
  7 in total

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