Literature DB >> 36043866

Draft Genome Sequence of Paenalcaligenes niemegkensis NGK35T, Isolated from Plastic-Polluted Soil of an Abandoned Landfill.

Alexander Bartholomäus1, Julia Mitzscherling1, Daniel Lipus1, Joana MacLean1, Dirk Wagner1,2.   

Abstract

The Gram-negative bacterium Paenalcaligenes niemegkensis NGK35T was isolated from plastic debris in an abandoned landfill. It has the ability to grow on polyethylene and hexadecane as the sole carbon sources. Here, we report the corresponding draft genome, which contains 3.66 Mbp and is characterized by a G+C content of 52.1%.

Entities:  

Year:  2022        PMID： 36043866      PMCID： PMC9584287          DOI： 10.1128/mra.00671-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  10 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

3.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

4.  Paenalcaligenes niemegkensis sp. nov., a novel species of the family Alcaligenaceae isolated from plastic waste.

Authors:  Julia Mitzscherling; Joana MacLean; Daniel Lipus; Alexander Bartholomäus; Kai Mangelsdorf; André Lipski; Vladimir Roddatis; Susanne Liebner; Dirk Wagner
Journal:  Int J Syst Evol Microbiol       Date:  2022-04       Impact factor: 2.747

5.  Paenalcaligenes hermetiae sp. nov., isolated from the larval gut of Hermetia illucens (Diptera: Stratiomyidae), and emended description of the genus Paenalcaligenes.

Authors:  Youn Yeop Lee; Jae Kook Lee; Kwan Ho Park; Seo-Yeon Kim; Seong Woon Roh; Sang-Beom Lee; Youngcheol Choi; Sung-Jae Lee
Journal:  Int J Syst Evol Microbiol       Date:  2013-06-28       Impact factor: 2.747

6.  Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.

Authors:  P Kämpfer; E Falsen; S Langer; N Lodders; H-J Busse
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-14       Impact factor: 2.747

7.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

8.  GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.

Authors:  Pierre-Alain Chaumeil; Aaron J Mussig; Philip Hugenholtz; Donovan H Parks
Journal:  Bioinformatics       Date:  2019-11-15       Impact factor: 6.937

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

10.  JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.

Authors:  Michael Richter; Ramon Rosselló-Móra; Frank Oliver Glöckner; Jörg Peplies
Journal:  Bioinformatics       Date:  2015-11-16       Impact factor: 6.937
  10 in total

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