| Literature DB >> 36042518 |
Ruut Uusitalo1,2,3, Mika Siljander4, Andreas Lindén5, Jani J Sormunen6,7, Juha Aalto8, Guy Hendrickx9, Eva Kallio10, Andrea Vajda8, Hilppa Gregow8, Heikki Henttonen5, Cedric Marsboom9, Essi M Korhonen11,12,13, Tarja Sironen11,12,13, Petri Pellikka4,14,15, Olli Vapalahti11,12,13.
Abstract
BACKGROUND: Ticks are responsible for transmitting several notable pathogens worldwide. Finland lies in a zone where two human-biting tick species co-occur: Ixodes ricinus and Ixodes persulcatus. Tick densities have increased in boreal regions worldwide during past decades, and tick-borne pathogens have been identified as one of the major threats to public health in the face of climate change.Entities:
Keywords: Borrelia burgdorferi sensu lato; Ensemble prediction; Ixodes persulcatus; Ixodes ricinus; Species distribution modelling; Tick-borne pathogen
Mesh:
Year: 2022 PMID: 36042518 PMCID: PMC9429443 DOI: 10.1186/s13071-022-05410-8
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 4.047
Fig. 1A map presenting the study area with elevation levels
Fig. 2Presence–absence data of a I. ricinus and b I. persulcatus after data thinning, presented together with mean air temperature during the activity seasons of each species: May–September for I. ricinus and April–June for I. persulcatus in 2014–2021
Descriptions of geospatial data used in the study
| Data layer(s) | Modifications | Year | Spatial resolution | References |
|---|---|---|---|---|
| Mean monthly air temperature (°C) | Calculated mean monthly air temperature during the activity season of | 2014–2021 | 1000 m | FMI [ |
| Mean monthly precipitation (mm) | Calculated mean monthly precipitation during the activity season of | 2014–2021 | 1000 m | FMI [ |
| Mean monthly snow depth (cm) | Calculated mean monthly snow depth in January–April 2014–2021 | 2014–2021 | 1000 m | FMI [ |
| Mean precipitation during the growing season (mm) | Calculated mean precipitation during the growing season | Averages for 1981–2010 | 1000 m | FMI [ |
| Mean heat summation during the growing season (°C day) | Calculated mean heat summation during the growing season | Averages for 1981–2010 | 1000 m | FMI [ |
| Growing season length (GLS) (days) | Calculated growing season length (GLS) | Averages for 1981–2010 | 1000 m | FMI [ |
| CORINE land cover 2018 | Euclidean distances to water, meadow, and forest from tick species presence–absence points were calculated in ArcGIS | 2018 | 20 m | SYKE [ |
| Human population density (persons/km2) | Calculated as a sum | 2019 | 1000 m | Statistics Finland [ |
| Digital elevation model (DEM) (m) | Calculated mean elevation | 2019 | 10 × 10 m | NLS of Finland [ |
| Normalized difference vegetation index (NDVI) | Mean NDVI | 2012–2020 | 1000 m | Global VIIRS data [ |
| Enhanced vegetation index (EVI) | Mean EVI | 2012–2020 | 1000 m | Global VIIRS data [ |
Land surface temperature (LST) (°C) Middle-infrared Reflectance (MIR) | Mean day and night LST Mean MIR | 2012–2020 2012–2020 | 1000 m 1000 m | Global VIIRS data [ Global VIIRS data [ |
Abundance indexes of red fox ( Habitat suitability data of | Average snow track densities in a 50-km radius. Annual average values were averages over 2014–2021. Based on wildlife triangle census Habitat suitabilities for | 2014–2021 Estimations based on 2014–2021 data | 1000 m 1000 m | LUKE [ Produced in this study |
FMI Finnish Meteorological Institute, SYKE Finnish Environment Institute, ESA European Satellite Agency, VIIRS Global Visible Infrared Imaging Radiometer Suite, LUKE Natural Resources Institute Finland
Fig. 3The relative contributions of the explanatory variables in the data set of a the environment and host and b the environment, host, and habitat suitability for the other species (I. ricinus/I. persulcatus) based on the mean ensemble models
The predictive accuracy of the mean ensemble models in different variable compositions
| AUC | Sensitivity | Specificity | |
|---|---|---|---|
| Environmental | 0.90 | 78.3 | 84.2 |
| Host | 0.90 | 76 | 86.8 |
| Environmental + Host | 0.91 | 75.2 | 89.5 |
| Environmental + Host + Habitat suitability for | 0.94 | 92.2 | 79.2 |
| Environmental | 0.91 | 89.3 | 78.1 |
| Host | 0.92 | 91.4 | 78.7 |
| Environmental + Host | 0.93 | 92.7 | 78.3 |
| Environmental + Host + Habitat suitability for | 0.96 | 91.9 | 83.8 |
Fig. 4Partial dependency plots for a I. ricinus and b I. persulcatus based on combined host and environmental data produced by the mean ensemble model
Fig. 5Estimated habitat suitabilities for I. ricinus in mainland Finland by the ensemble mean method over several modelling methods based on a environment only data, b host only data, c combined environmental and host data, and d combined environmental, host and, habitat suitability data for I. persulcatus
Fig. 6The estimated habitat suitabilities for I. persulcatus in mainland Finland by the ensemble mean method over several modelling methods based on a environment only data, b host only data, c combined environmental and host data, and d combined environmental, host, and habitat suitability data for I. ricinus
Fig. 7A coefficient of variation in the predictions estimating the uncertainty of the ensemble predictions over several modelling methods for I. ricinus in mainland Finland based on a environment only data, b host only data, c combined environmental and host data, and d combined environmental, host, and habitat suitability data for I. persulcatus
Fig. 8A coefficient of variation in the predictions assessing the uncertainty of the ensemble predictions over several modelling methods for I. persulcatus in mainland Finland based on a environment only data, b host only data, c combined environmental and host data, and d combined environmental, host, and habitat suitability data for I. ricinus