Literature DB >> 36040928

Diagnostics to support the control of scabies-Development of two target product profiles.

Michael Marks1,2,3, Jodie McVernon4,5,6,7, James S McCarthy4, Wendemagegn Enbiale8,9, Christopher Hanna10, Olivier Chosidow11,12,13, Daniel Engelman14,15,16, Kingsley Asiedu17, Andrew Steer14,15,16.   

Abstract

BACKGROUND: Scabies was added to the WHO NTD portfolio in 2017 and targets for the control of scabies were included in the 2021-2030 WHO NTD roadmap. A major component of scabies control efforts a strategy based on mass drug administration (MDA) with ivermectin. Currently diagnosis of scabies relies on clinical examination with a limited role for diagnostic testing. Under the recommendation of the WHO Diagnostic Technical Advisory Group (DTAG) for Neglected Tropical Diseases, a working group was assembled and tasked with agreeing on priority use cases for and developing target product profiles (TPPs) for new diagnostics tools for scabies. METHODOLOGY AND PRINCIPAL
FINDINGS: The working group convened three times and established two use cases: establishing if the 10% threshold for mass drug administration had been reached and if the 2% threshold for stopping mass drug administration has been achieved. One subgroup assessed the current diagnostic landscape for scabies and a second subgroup determined the test requirements for both use cases. Draft TPPs were sent out for input from stakeholders and experts. Both TPPs considered the following parameters: product use, design, performance, configuration, cost, access and equity. The group considered the use of the tests as a single step process or as part of a two step process following initial clinical examination. When used a single step test (the ideal scenario) for starting MDA a new diagnostic required a sensitivity of ≥92% and a specificity of ≥98%. When used a single step test (the ideal scenario) for stopping MDA a new diagnostic required a sensitivity of ≥80% and a specificity of ≥99%.
CONCLUSIONS: The TPPs developed will provide test developers with guidance to ensure that novel diagnostic tests meet identified public health needs.

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Year:  2022        PMID: 36040928      PMCID: PMC9467343          DOI: 10.1371/journal.pntd.0010556

Source DB:  PubMed          Journal:  PLoS Negl Trop Dis        ISSN: 1935-2727


Introduction

Scabies is caused by infestation with the ectoparasite Sarcoptes scabiei var. hominis [1]. Infestation leads to itch, skin lesions and in some cases more serious complications due to bacterial superinfection. Scabies occurs worldwide but its distribution is not uniform. In high-income settings, most cases are sporadic. A far higher burden of disease is found in low and middle income countries [2]. In some settings the community prevalence of scabies may be as high as 20–30%. In response to the high burden of disease, individual country commitments to control the disease and the emerging evidence that ivermectin-based mass drug administration (MDA) represents an effective control strategy [3,4], scabies was added to the World Health Organization (WHO) list of Neglected Tropical Diseases (NTDs) in 2017. This was followed in 2019 by an informal consultation, convened by WHO in 2019, and which resulted in a provisional framework for scabies control [5,6]. Central to scale-up of control efforts is the need for more accurate data on the distribution of scabies to guide the roll-out of interventions. Historically, scabies control has been hampered by the lack of a standardised approach to diagnosis, with systematic reviews identifying inconsistency in scabies diagnostic criteria across studies. In response to this the International Alliance for the Control of Scabies (IACS) used a Delphi consensus method to develop standardized criteria for scabies diagnosis [7,8]. Initial validation studies of these criteria have been conducted in some settings and evaluations of training programmes based on the clinical aspects of these criteria have found that mid-level health care workers can be trained to a standard that ensures an acceptable level of sensitivity, specificity and reproducibility [9-11]. In addition to clinical diagnosis a number of novel diagnostic tests for scabies are being developed [12-14], but none are currently suitable for adoption. Ensuring that diagnostic tools in development are suitable for programmatic use is a critical issue in supporting the scale up of scabies control efforts in line with the 2021–2030 NTD roadmap. At the request of the WHO Department of Control of Neglected Tropical Diseases (NTDs) a single WHO working group was established to identify and prioritize diagnostic needs for each of the 20 NTDs, and to inform WHO strategies and guidance on the subject [15]. The first meeting of this group, known as the Diagnostic Technical Advisory Group (DTAG), was held in Geneva, Switzerland, on 30th and 31st October 2019. This meeting resulted in the identification of several key priorities for the DTAG. One identified priority was the development of Target Product Profiles (TPPs) for diagnostics to support emerging scabies control programmes. In this manuscript, we report the process used in developing the TPPs for scabies, the TPP specifications and the assumptions made. The purpose of these TPPs is to support the scabies control strategy in two critical decision areas i) whether the threshold for initiating MDA has been met and ii) whether the threshold for stopping MDA has been met.

Methods

Based on the recommendation of the DTAG, WHO formed a group of skin-related NTDs to address TPPs for each of these NTDs. A scabies sub-group was established including members of this group and external experts. The scabies subgroup met from November 2020 to April 2021 to agree on priority use cases for the TPPs and undertake the process for the developments of the TPPs. The subgroup leveraged the WHO core TPP development process (Fig 1) as the framework and followed well-established quality planning methodologies [16,17]. Two priority use cases for scabies were agreed upon, based on the recommendations from the recently developed framework for scabies control i) establishing if the proposed community prevalence of scabies for initiating MDA (10%) had been met (starting MDA), and ii) establishing if the proposed threshold for ceasing MDA (2%) had been met (stopping MDA). These recommendations assume that survey will be conducted using cluster randomized, whole age household survey designs with decisions about MDA being made at the level of the whole evaluation unit. There is currently no agreed design effect for use in scabies surveys so for the purpose of the TPP development we used a design effect of 2. Within the scabies TPP group two expert subgroups were formed, one to determine the attributes required for each scenario (use case characteristics) and another to review the landscape of currently available diagnostic strategies, in addition to a separate modelling of test performance requirements (i.e., sensitivity and specificity) that must be achieved to meet use case objectives. Ultimately, TPPs are intended to facilitate expeditious development of missing diagnostic assays addressing prioritized public health needs. Using the WHO core TPP development process, the expert subgroups for scabies convened online five times to determine the requirements for each use case.
Fig 1

World Health Organization Target Product Profile Process.

TPPs for each use case considered the following parameters: product use, design, performance, product configuration and cost, and access and equity. Initial ‘Draft Zero’ requirements in each TPP were selected based on landscape analyses, use case needs analysis and diagnostics performance modeling developed through a consultative process coordinated by WHO Department of the Control of NTDs. For certain elements in each use case, parameters were defined at the outset, and assumptions were made to move forward with sensitivity and specificity calculations. In the context of scabies, the group considered two implementation scenarios. In the first scenario a two-step diagnostic process was considered. This scenario was taken to reflect the process where initial clinical diagnosis was followed by performance of a diagnostic test. In the second scenario a single-step diagnostic process was considered. This scenario was taken to reflect a process whether either clinical diagnosis or performance of a test alone was used as the diagnostic strategy. The committee considered that prevalence surveys would be conducted in line with recommendations arising from the WHO Informal Consultation on Scabies Control. This included the performance of all age, community based cluster randomized surveys. Modelling was used to evaluate the sensitivity and specificity that would be required in each use-case. For the ‘Start MDA’ use-case sensitivity and specificity were selected such that a true population prevalence of 10% would be detected 80% of the time (false-negative rate 20%) and that a true population prevalence of 8% would only be incorrectly classified as being above the MDA threshold 5% of the time (false-positive rate 5%). For the ‘Stop MDA’ use-case sensitivity and specificity were selected such that if the true population prevalence were 3% it would be incorrectly classified as <2% only 5% of the time (false-positive rate 5%). In the context of a two-step diagnostic process it was assumed that the sensitivity and specificity of clinical diagnosis were both 80%. It was recognized that this is at the upper limit of the performance reported in evaluations of mid-level healthcare worker diagnosis of scabies[9,10,18,19] and that lower levels of accuracy of initial clinical diagnosis would impact any two-step diagnostic process. Following development of the initial TPP the scabies subgroup critically reviewed and modified the draft zero where warranted. The draft zero TPP was then sent to the main DTAG committee for review and comments.After revising based on the comments from the DTAG, the scabies subgroup finalized the TPP details, and draft 0.1 TPPs were posted on the WHO website for public comment in July 2021. Comments received were shared with the experts, and TPPs were revised accordingly to generate version 1.0 TPPs.

Results

The diagnostic landscape review identified clinical and direct identification methodologies as tests that were currently available and antigen and molecular diagnostic tests as in development (Table 1). Estimates of sensitivity and specificity are based on expert opinion informed by the literature.
Table 1

Diagnostic Landscape of available tests for scabies.

Diagnostic toolSample typeAnalyteDiagnostic SensitivityDiagnostic SpecificityAnalytical LODChallenges
Physical Examination by an expertExposed skinVisual identification of scabies Best lesions including pathognomic lesions such as burrowsCould be >95% (Considered reference std)Could be >95%; inter-operator agrement for 2 expert examiners often >95%Unclear: can diagnose individuals with <10 lesionsRequires highly trained clinicians with many years of experience
Physical Examination by a mid-level expertExposed skinVisual identification of common scabies lesions65–85% compared to an expert65–85% compared to an expertVaries according to severity of cases. Most programmes have shown reduced sensitivity in milder cases of scabies.Further evaluation of training packages needed.
DermoscopyExposed skinIn vivo mite/ productsVaries between 15–90% depending on expertise and the time allowed for examination95–100% when performed by an expertSingle miteRequires significant specialist training limiting widespread field use
MicroscopySkin scrapingsMites / EggsDependent on time available—can reach 90%95–100% when performed by an expertSingle miteSignificant specialist training is required. Not practical in a field setting.
SerologySerumDetection of specific antibodiesCurrently unknownCurrently unknownTBDCross-reaction with other mites. No well validated assay available.
PCR/LAMPSkin scrapingsAmplified nucleic acid targetsCurrently unknownCurrently unknownTBDNot a point of care test. High skill level for implementation. Capital costs of laboratory equipment.
Version 1.0 TPPs for the two use cases were published by WHO on 7 November 2021 within the WHO Global Observatory on Health R&D. No changes were made following the period of public consultation. Select TPP features and their associated requirements are presented in Tables 2 and 3. It was considered a minimum requirement for a test to be lab based and only require standard laboratory equipment. It was considered an ideal requirement that the test could be used at the point-of-care.
Table 2

Select characteristics of needed test for Starting MDA.

FeatureIdeal requirement (Used as a single step-test)Minimum requirement (Used following an initial screening examination*)
Intended useAn in vitro point-of-care test that detects S. scabiei-specific analyte(s) for the purpose of "scabies mapping" to identify areas with ≥10% disease prevalence.An in vitro laboratory-based test that detects S. scabiei-specific analyte(s) for the purpose of "scabies mapping" to identify areas with ≥10% disease prevalence.
Target analyteBiomarker(s) specific for current active infection from S. scabiei.Biomarker(s) specific for current active infection from S. scabiei.
Diagnostic/clinical sensitivity92%Confirmatory test sensitivity: 96%
Diagnostic/clinical specificity98%Confirmatory test specificity: 84%
Cost per test<USD$1<USD$3

*Initial clinical screening is considered to have a sensitivity and specificity of 80%.

Table 3

Select characteristics of needed test for Stopping MDA.

FeatureIdeal requirement (Used as a single step-test)Minimum requirement (Used following an initial screening examination*)
Intended useAn in vitro point-of-care test that detects S. scabiei-specific analyte(s) for the purpose of "scabies mapping" to identify areas with ≥10% disease prevalence.An in vitro laboratory based test that detects S. scabiei-specific analyte(s) for the purpose of "scabies mapping" to identify areas with ≥10% disease prevalence.
Target analyteBiomarker(s) specific for current active infection from S. scabiei.Biomarker(s) specific for current active infection from S. scabiei.
Diagnostic/clinical sensitivity80%Confirmatory test sensitivity: 81%
Diagnostic/clinical specificity99%Confirmatory test specificity: 93%
Cost per test<USD$1<USD$3

*Initial clinical screening is considered to have a sensitivity and specificity of 80%.

*Initial clinical screening is considered to have a sensitivity and specificity of 80%. *Initial clinical screening is considered to have a sensitivity and specificity of 80%.

Discussion

Relative to almost all other NTD programmes global scabies control efforts are at an earlier stage of development. The World Scabies Programme, established in Australia in 2019, represents a first step towards scale-up of scabies control efforts globally, but further work is required to support countries in reaching the ambitious goals for scabies control outlined in the 2021–2030 NTD roadmap [20]. Major challenges facing programmes include the absence of a drug donation programme, the need for further data on the effectiveness of MDA at programmatic scale, and the lack of robust epidemiological data to identify regions where MDA should be rolled-out. Ensuring high-quality, reliable diagnosis of scabies is a critical step in addressing the second of these challenges. The TPP process outlined in this paper represents an important step in establishing criteria for future scabies diagnostics to address programmatic needs. Currently most activities rely on clinical diagnosis performed by different cadres of healthcare workers. The introduction and validation of the 2020 IACS Consensus criteria for scabies has been an important step in standardizing clinical diagnosis of scabies in research studies [7,9,10], but further work is needed in a programmatic context. In the context of TPP development the group considered two scenarios. In the first scenario performance characteristics were developed assuming a test was performed following initial clinical screening. The sensitivity and specificity of this screening was set at 80% for the purpose of this process. This level of accuracy has been reported in some but not all evaluations of mid-level healthcare worker diagnosis of scabies highlighting the need for further work to improve training for the critical cadre of staff. If the sensitivity of initial clinical examination was substantially below 80% the two-stage process becomes less viable as a strategy, in particular for the decision to initiate MDA. For this reason a single-step test is likely to be preferable if it can be achieved. The single-step TPP criteria require higher levels of performance which surpass those seen in all evaluations of mid-level healthcare workers to date. Other programmes such as trachoma have focused less on achieving particular levels of sensitivity and specificity for mid-level healthcare workers and instead on achieving high levels of inter-operator reliability and setting programmatic thresholds in relation to the accuracy of these mid-level healthcare workers. Whether such approaches could be considered for scabies warrants further consideration. The provisional framework for scabies control recommends treatment of an entire community predominantly with ivermectin-based MDA in settings where the prevalence of scabies 10% or greater, and that this intervention is continued for between three to five rounds before an assessment of disease prevalence is undertaken. If the community prevalence has fallen to below 2% it is recommended that MDA is ceased, whereas if the prevalence of MDA remains above 2%, further extension of the MDA is recommended [6]. These thresholds are based on current best evidence but may change as further implementation, and operational research studies are undertaken and may be further refined based on insights from mathematical modelling studies [21]. For this TPP, the expert subgroup considered the criteria needed to accurately start MDA at least 80% of the time when the prevalence of scabies was at least 10% and to not incorrectly start if the prevalence was 8% or less more than 5% of the time. The requirement to avoid initiation of MDA reflects, in part, the current absence of evidence about the effectiveness and cost-effectiveness of MDA as a strategy at lower prevalences alongside also the lack of a current drug donation to support MDA progammes, rather than an intrinsic biological rationale for the current threshold. Equally thresholds for stopping reflect expert consensus rather than empirically derived thresholds below which rebound of disease is unlikely following cessation of MDA. The TPP characteristics for both use cases should therefore be considered within these current constraints and the specifications may need to evolve as further data and/or a drug donation or reliable, cheap supply of ivermectin and permethrin becomes available.

Conclusion

Two TPPs have been presented in this manuscript. The first lays out the specifications for diagnostic tools to detect when MDA should be started and the second when MDA should be ceased. As well as the technical characteristics outlined in this paper and the published TPPS, diagnostic fulfil developed for use in a NTD control or eradication programmes should also be designed to fulfill the WHO reassured criteria. Ideally these TPPs will help inform evaluations of novel diagnostic tests and provide guidance on the standard of clinical diagnosis that would be required if that were to solve as the primary diagnostic modality. 30 Jun 2022 Dear Dr. Marks, Thank you very much for submitting your manuscript "Diagnostics to support the control of scabies– Development of Two Target Product Profiles" for consideration at PLOS Neglected Tropical Diseases. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments. I would suggest that you replace the letters with the numbers after the authors names and use these numbers (in superscript and adjacent to the first letter of the address) also for the addresses. Correct the sentence: i) establishing if the proposed % community prevalence of scabies for initiating MDA (10%) had been met (starting MDA)… Is there a reason to start with Table 2?> Give explanations what the * in table 2 (1) means Table 3: Replace the sign ^ with a and continue with b,c,d, instead of ^c, d, and 3!! Why is 3 written in red? Give explanations what all these mean. Table 4: Give explanations for ^ and 3, replace them with a and b. Is there any reason why the 3 (whatever it is) is placed in front of the percentages? Table 3 and 4: Write everywhere S. scabiei. Separate twice Sarcoptesscabiei and replace with S. scabiei (always in italics) Throughout the text leave a space before the reference numbers. We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Please prepare and submit your revised manuscript within 60 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. Please note that revised manuscripts received after the 60-day due date may require evaluation and peer review similar to newly submitted manuscripts. Thank you again for your submission. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Kosta Y. Mumcuoglu, PhD Associate Editor PLOS Neglected Tropical Diseases Jaap van Hellemond Deputy Editor PLOS Neglected Tropical Diseases *********************** I would suggest that you replace the letters with the numbers after the authors names and use these numbers (in superscript and adjacent to the first letter of the address) also for the addresses. Correct the sentence: i) establishing if the proposed % community prevalence of scabies for initiating MDA (10%) had been met (starting MDA)… Is there a reason to start with Table 2?> Give explanations what the * in table 2 (1) means Table 3: Replace the sign ^ with a and continue with b,c,d, instead of ^c, d, and 3!! Why is 3 written in red? Give explanations what all these mean. Table 4: Give explanations for ^ and 3, replace them with a and b. Is there any reason why the 3 (whatever it is) is placed in front of the percentages? Table 3 and 4: Write everywhere S. scabiei. Separate twice Sarcoptesscabiei and replace with S. scabiei (always in italics) Throughout the text leave a space before the reference numbers. Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: objectives and rationale clearly stated Reviewer #2: Authors do a reasonable job describing the TPP process and the basic assumptions used to make the sensitivity and specificity calculations. They should describe the assumptions about the survey design (as cluster design will impact these calculations). It would be helpful to include a table that clearly lays out the various assumptions, as this would help the user understand better how changes in our understanding of the accuracy of the assumptions would impact the TPP -------------------- Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: results well reported Reviewer #2: The TPPs are presented but other information that is important is missing in this section. 1. It would be helpful for a detailed description of the results of the calculations for sensitivity and specificity (particularly for how the inclusion of the clinical screening prior to the diagnostic test) to be included. Any sensitivity analyses around specific assumptions would be important (e.g. if the performance of the clinical exam is 60%, 70% or 90% how might that impact the needs? 2. In the table about the diagnostic landscape (table 2): are the specificities and sensitivities for the different modalities data-based or expert opinion? Citations should be provided for those numbers that are evidenced-based. If there is a limited amount of evidence, a note to the table indicating that the numbers are expert opinion except when indicated would be important. Also indicate #s from the grey literature. 3. There are a number of footnotes in the tables 3 & 4 that have no corresponding note below the tables (only the ^ appears below the tables. What about 3, c, and d? 4. Very curious as to why the ideal test is LAB-based and not POC. This would be something that would be important to mention in the discussion, as it seems that it would be the other way around. -------------------- Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: Sharp and to the point Reviewer #2: Publication of the TPP and a detailed description of how they were developed is a important next step in engaging with those who will help develop the needed tests. 1. Would expound a bit more about the World Scabies Program (and perhaps provide the link); despite its name it is quite small (and underfunded) but it is an important first step towards scale up. A sentence or two describing its structure and funding and clearly stating that it is not a WHO organization would be important. 2. The TPP seems to address the 3 problem challenged mentioned in the 1st paragraph of the discussion, not the second. 3. I was looking for a discussion of how potential changes in the provision thresholds might impact the TPP. Is it likely that the thresholds will go up or down? Which would be more problematic for the TPP? 4. I was also looking for a discussion about how the uncertainty around the calculation of sens/spec of non-expert clinical exam and how that impacts sens/spec calculations for the minimum requirements would be important; should the focus be on a test that does not require exam? Why or why not? 5. If error in a particular assumption could greatly change the needs, some time should be devoted to discussing this. Some would allow for a less stringent profile, others would have the opposite impact. Test developers would need to know this so that they can adjust as the understanding of the true need evolves. 6. What are the implications of not starting MDA (given the 20% risk of not detecting 10% prevalence) vs starting MDA when it not needed (given the 5% risk of finding >10% when the prevalence is 8%)? -------------------- Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: (No Response) Reviewer #2: Numerous typos, run-on sentences, spacing errors, extra periods Genus/species names that are not italicized, etc. Authors should review thoroughly and correct. If future versions of the paper included line numbers it would be easier for review to provide specific feedback. Recommend table of assumptions, table of sensitivity analyses relevant to the determination of the required test specificity and sensitivity and changes to tables 2, 3, and 4. If any changes to the TPP were made based on public comment, it would be nice to have that pointed out. -------------------- Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: I have attached some relatively minor edits on a word draft which may be of use Reviewer #2: The publication of TPP for NTD diagnostics is an important step in the refinement of strategies that will allow progress towards the 2030 goal, and for scabies, for the scale up and demonstration of the impact of control activities. The authors describe the WHO process and many of the assumptions, but much information that would be useful to those would develop new tests is lacking. Adding more detailed description of the calculations, how the 2-step versus 1-step process affects the calculations (and why is a one-step process ideal compared to the 2-step process), how various assumptions impact the TPP, and citations to support some of the specificity and sensitivity claims in table 2 would make this a document that is much more useful to the end users. -------------------- PLOS authors have the option to publish the peer review history of their article (what does this mean?). 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Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols Submitted filename: 220518_Scabies TPP manuscript (1).docx Click here for additional data file. Submitted filename: 220518_Scabies TPP manuscript (1).docx Click here for additional data file. 20 Jul 2022 Submitted filename: 220716_TPP Revision.docx Click here for additional data file. 8 Aug 2022 Dear Dr. Marks, We are pleased to inform you that your manuscript 'Diagnostics to support the control of scabies– Development of Two Target Product Profiles' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Please prepare the final version of the manuscript by taking into consideration the remarks of the reviewer below. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Kosta Y. Mumcuoglu, PhD Academic Editor PLOS Neglected Tropical Diseases Jaap van Hellemond Section Editor PLOS Neglected Tropical Diseases *********************************************************** Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #2: This is a second review. Previous comments are valid. ********** Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #2: This is a second review. Previous comments are valid. ********** Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #2: This is a second review. Previous comments are valid. ********** Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #2: (No Response) ********** Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #2: Thanks for the thoughtful responses and apologies for the confusion about one of my comments. 1. Clarifying my previous comment: Line 207-212. Authors state that the TPP helps address the 2nd problem identified (the need for data on effectiveness of MDA at a programmatic level); I suggest that is would be important both for that issue and for the 3rd challenge regarding the need for robust epidemiological data that indicate where MDA should be rolled out. 2. Ideal vs minimal requirements. I appreciate the additional sentence in the text. However, both table 2 and table 3 still indicate that the IDEAL test is lab-based and the MINIMAL test is point of contact. Please correct the tables. Minor corrections 1. Line 209, need a comma and not a period 2. Line 205, need a comma before the 'but' 3. Lines 217/218, need a comma before the 'but' 4. Line 224, need a comma before 'then' 5. Line 236, delete comma 6. Line 238, need a comma after 2% 7. Line 238, need either a semicolon or a period before 'whereas' 8. Line 251, need a comma before 'and' ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No 25 Aug 2022 Dear Dr. Marks, We are delighted to inform you that your manuscript, "Diagnostics to support the control of scabies– Development of Two Target Product Profiles," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases
  17 in total

1.  Development and efficacy of a nested real-time quantitative polymerase chain reaction to identify the cytochrome c oxidase subunit 1 gene of Sarcoptes scabiei var. hominis for diagnosis and monitoring of ordinary scabies.

Authors:  J K Kim; E J Chun; S Y Yang; K S Kim; S S Kim; C W Kim
Journal:  Br J Dermatol       Date:  2020-08-26       Impact factor: 9.302

Review 2.  Scabies.

Authors:  Jörg Heukelbach; Hermann Feldmeier
Journal:  Lancet       Date:  2006-05-27       Impact factor: 79.321

3.  The efficacy of a nested polymerase chain reaction in detecting the cytochrome c oxidase subunit 1 gene of Sarcoptes scabiei var. hominis for diagnosing scabies.

Authors:  J E Hahm; C W Kim; S S Kim
Journal:  Br J Dermatol       Date:  2018-07-13       Impact factor: 9.302

4.  Mass Drug Administration for Scabies Control in a Population with Endemic Disease.

Authors:  Lucia Romani; Margot J Whitfeld; Josefa Koroivueta; Mike Kama; Handan Wand; Lisi Tikoduadua; Meciusela Tuicakau; Aminiasi Koroi; Ross Andrews; John M Kaldor; Andrew C Steer
Journal:  N Engl J Med       Date:  2015-12-10       Impact factor: 91.245

5.  The diagnosis of scabies by non-expert examiners: A study of diagnostic accuracy.

Authors:  Millicent H Osti; Oliver Sokana; Christina Gorae; Margot J Whitfeld; Andrew C Steer; Daniel Engelman
Journal:  PLoS Negl Trop Dis       Date:  2019-08-19

6.  High burden and seasonal variation of paediatric scabies and pyoderma prevalence in The Gambia: A cross-sectional study.

Authors:  Edwin P Armitage; Elina Senghore; Saffiatou Darboe; Momodou Barry; Janko Camara; Sulayman Bah; Michael Marks; Carla Cerami; Anna Roca; Martin Antonio; Claire E Turner; Thushan I de Silva
Journal:  PLoS Negl Trop Dis       Date:  2019-10-14

Review 7.  The 2020 International Alliance for the Control of Scabies Consensus Criteria for the Diagnosis of Scabies.

Authors:  D Engelman; J Yoshizumi; R J Hay; M Osti; G Micali; S Norton; S Walton; F Boralevi; C Bernigaud; A C Bowen; A Y Chang; O Chosidow; G Estrada-Chavez; H Feldmeier; N Ishii; F Lacarrubba; A Mahé; T Maurer; M M A Mahdi; M E Murdoch; D Pariser; P A Nair; W Rehmus; L Romani; D Tilakaratne; M Tuicakau; S L Walker; K A Wanat; M J Whitfeld; R R Yotsu; A C Steer; L C Fuller
Journal:  Br J Dermatol       Date:  2020-03-29       Impact factor: 9.302

8.  Feasibility and safety of mass drug coadministration with azithromycin and ivermectin for the control of neglected tropical diseases: a single-arm intervention trial.

Authors:  Lucia Romani; Michael Marks; Oliver Sokana; Titus Nasi; Bakaai Kamoriki; Handan Wand; Margot J Whitfeld; Daniel Engelman; Anthony W Solomon; Andrew C Steer; John M Kaldor
Journal:  Lancet Glob Health       Date:  2018-10       Impact factor: 38.927

9.  Molecular diagnosis of scabies using a novel probe-based polymerase chain reaction assay targeting high-copy number repetitive sequences in the Sarcoptes scabiei genome.

Authors:  Lena Chng; Deborah C Holt; Matt Field; Joshua R Francis; Dev Tilakaratne; Milou H Dekkers; Greg Robinson; Kate Mounsey; Rebecca Pavlos; Asha C Bowen; Katja Fischer; Anthony T Papenfuss; Robin B Gasser; Pasi K Korhonen; Bart J Currie; James S McCarthy; Cielo Pasay
Journal:  PLoS Negl Trop Dis       Date:  2021-02-24

10.  A framework for scabies control.

Authors:  Daniel Engelman; Michael Marks; Andrew C Steer; Abate Beshah; Gautam Biswas; Olivier Chosidow; Luc E Coffeng; Belen Lardizabal Dofitas; Wendemagegn Enbiale; Mosoka Fallah; Elkhan Gasimov; Adrian Hopkins; Julie Jacobson; John M Kaldor; Fatimata Ly; Charles D Mackenzie; Jodie McVernon; Matthew Parnaby; Merelesita Rainima-Qaniuci; Oliver Sokana; Dieudonne Sankara; Rie Yotsu; Aya Yajima; Paul T Cantey
Journal:  PLoS Negl Trop Dis       Date:  2021-09-02
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