Literature DB >> 36036604

Genome Sequences of 18 Salmonella enterica Serotype Hadar Strains Collected from Patients in the United States.

Hattie E Webb1,2, Justin Y Kim1,2, Kaitlin A Tagg1,2, Fernando de la Cruz3, Arancha Peñil-Celis3, Beth Tolar2, Zachary Ellison2,4, Colin Schwensohn2, Joshua Brandenburg2,4, Megin Nichols2, Jason P Folster2.   

Abstract

Despite being linked to a number of recent poultry-associated outbreaks in the United States, few reference genomes are available for Salmonella enterica serotype Hadar. Here, we address this need by reporting 18 Salmonella Hadar genomes from samples collected from patients in the United States between 2014 and 2020.

Entities:  

Year:  2022        PMID： 36036604      PMCID： PMC9583786          DOI： 10.1128/mra.00522-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  11 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data.

Authors:  Shaokang Zhang; Hendrik C den Bakker; Shaoting Li; Jessica Chen; Blake A Dinsmore; Charlotte Lane; A C Lauer; Patricia I Fields; Xiangyu Deng
Journal:  Appl Environ Microbiol       Date:  2019-11-14       Impact factor: 4.792

3.  An Overview of PulseNet USA Databases.

Authors:  Beth Tolar; Lavin A Joseph; Morgan N Schroeder; Steven Stroika; Efrain M Ribot; Kelley B Hise; Peter Gerner-Smidt
Journal:  Foodborne Pathog Dis       Date:  2019-05-08       Impact factor: 3.171

4.  BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Authors:  Keith A Jolley; Martin C J Maiden
Journal:  BMC Bioinformatics       Date:  2010-12-10       Impact factor: 3.169

5.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

6.  Versatile genome assembly evaluation with QUAST-LG.

Authors:  Alla Mikheenko; Andrey Prjibelski; Vladislav Saveliev; Dmitry Antipov; Alexey Gurevich
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937

7.  Recovery of small plasmid sequences via Oxford Nanopore sequencing.

Authors:  Ryan R Wick; Louise M Judd; Kelly L Wyres; Kathryn E Holt
Journal:  Microb Genom       Date:  2021-08

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

9.  COPLA, a taxonomic classifier of plasmids.

Authors:  Santiago Redondo-Salvo; Roger Bartomeus-Peñalver; Luis Vielva; Kaitlin A Tagg; Hattie E Webb; Raúl Fernández-López; Fernando de la Cruz
Journal:  BMC Bioinformatics       Date:  2021-07-31       Impact factor: 3.169
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