| Literature DB >> 36035130 |
Jinji Zhang1, Fayong Wu1, Shenge Chen1, Ying Zhu1, Xian Luo1, Xiaolin Qiu1.
Abstract
Aims: The causal relationship between COVID-19 infection and stroke has not yet been fully established. This study aimed to explore this causality using two-sample Mendelian randomization (MR). Materials andEntities:
Keywords: COVID-19; Mendelian randomization; ischemic stroke; severity; stroke
Year: 2022 PMID: 36035130 PMCID: PMC9412810 DOI: 10.3389/fgene.2022.895211
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
FIGURE 1Diagram of two-sample Mendelian randomization analysis. Assumption 1: the SNPs should be associated with COVID-19 susceptibility or severity; Assumption 2: the selected SNPs should be independent of confounders; Assumption 3: the SNPs should affect stroke only via COVID-19 susceptibility or severity rather than via a direct correlation.
The single nucleotide polymorphism selected for COVID-19 susceptibility to perform Mendelian randomization analysis.
| SNP | chr | EA_exposure | EA_outcome | β_exposure | β_outcome | EAF_ exposure | EAF_outcome | se_outcome |
| se_exposure |
|
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs115102354 | 3 | G | G | 0.189870 | 0.0323 | 0.06874 | 0.0605 | 0.0211 | 0.1260 | 0.032123 | 3.40400e-09 | 34.93659 |
| rs12482060 | 21 | G | G | 0.092530 | 0.0029 | 0.33800 | 0.3327 | 0.0097 | 0.7605 | 0.016098 | 9.02589e-09 | 33.03857 |
| rs2277732 | 19 | A | A | 0.096506 | −0.0084 | 0.31650 | 0.2996 | 0.0108 | 0.4377 | 0.016826 | 9.72501e-09 | 32.89629 |
| rs34326463 | 3 | G | G | 0.277170 | 0.0229 | 0.08326 | 0.0767 | 0.0181 | 0.2065 | 0.025832 | 7.37225e-27 | 115.1268 |
| rs71325098 | 3 | G | G | 0.163760 | 0.0142 | 0.12340 | 0.1123 | 0.0153 | 0.3542 | 0.023814 | 6.13903e-12 | 47.288 |
| rs73062389 | 3 | A | A | 0.207140 | −0.0134 | 0.05655 | 0.0567 | 0.0257 | 0.6003 | 0.033983 | 1.09199e-09 | 37.15391 |
| rs73062394 | 3 | T | T | 0.225990 | −0.0158 | 0.05339 | 0.0481 | 0.0277 | 0.5697 | 0.034043 | 3.17103e-11 | 44.06794 |
| rs75826707 | 3 | A | A | 0.290440 | 0.0189 | 0.03880 | 0.0267 | 0.0351 | 0.5911 | 0.046274 | 3.46099e-10 | 39.39479 |
SNP, single nucleotide polymorphism; EA, effect allele; EAF, frequency of the effect allele from the corresponding study; β, the effect of the effect allele; se, the standard error of the beta; p, p-value from the GWAS.
The single nucleotide polymorphism selected for severe respiratory symptoms due to COVID-19 to perform Mendelian randomization analysis.
| SNP | chr | EA_exposure | EA_outcome | β_exposure | β_outcome | EAF_ exposure | EAF_outcome | se_outcome |
| se_exposure |
|
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs10860891 | 12 | A | A | −0.26602 | 0.0098 | 0.89220 | 0.8884 | 0.0147 | 0.50320000 | 0.041627 | 1.65200e-10 | 40.83931 |
| rs11085727 | 19 | T | T | 0.17929 | −0.0189 | 0.28020 | 0.2756 | 0.0100 | 0.05934990 | 0.030197 | 2.89901e-09 | 35.25206 |
| rs115102354 | 3 | G | G | 0.44897 | 0.0323 | 0.06100 | 0.0605 | 0.0211 | 0.12600000 | 0.058774 | 2.19079e-14 | 58.35313 |
| rs13050728 | 21 | C | C | −0.19735 | −0.0006 | 0.66410 | 0.6496 | 0.0098 | 0.95350000 | 0.029635 | 2.74726e-11 | 44.34702 |
| rs13089543 | 3 | G | G | 0.28441 | 0.0223 | 0.10410 | 0.0862 | 0.0173 | 0.19740000 | 0.045518 | 4.14801e-10 | 39.04122 |
| rs13434336 | 3 | C | C | 0.20986 | 0.0110 | 0.30420 | 0.3261 | 0.0101 | 0.27670000 | 0.028722 | 2.73590e-13 | 53.38632 |
| rs143334143 | 6 | A | A | 0.33972 | 0.0042 | 0.09934 | 0.0866 | 0.0176 | 0.81280000 | 0.045476 | 8.01124e-14 | 55.80559 |
| rs2191031 | 3 | A | A | 0.30373 | 0.0315 | 0.19490 | 0.1931 | 0.0120 | 0.00899705 | 0.045643 | 2.84577e-11 | 44.28198 |
| rs2237698 | 7 | T | T | 0.23871 | −0.0223 | 0.08429 | 0.1133 | 0.0189 | 0.23910000 | 0.042315 | 1.68799e-08 | 31.82384 |
| rs2269899 | 12 | T | T | 0.18841 | 0.0185 | 0.67770 | 0.6627 | 0.0096 | 0.05437010 | 0.029553 | 1.82600e-10 | 40.64478 |
| rs2277732 | 19 | A | A | 0.24312 | −0.0084 | 0.32210 | 0.2996 | 0.0108 | 0.43770000 | 0.029940 | 4.65050e-16 | 65.93831 |
| rs34068335 | 3 | T | T | 0.47823 | 0.0142 | 0.11420 | 0.1114 | 0.0152 | 0.35090000 | 0.041968 | 4.42690e-30 | 129.8485 |
| rs35081325 | 3 | T | T | 0.68803 | 0.0221 | 0.07389 | 0.0758 | 0.0182 | 0.22510000 | 0.046813 | 6.69576e-49 | 216.014 |
| rs622568 | 7 | C | C | 0.22722 | 0.0137 | 0.13910 | 0.1707 | 0.0123 | 0.26590000 | 0.037705 | 1.67900e-09 | 36.31577 |
| rs75826707 | 3 | A | A | 0.67025 | 0.0189 | 0.03298 | 0.0267 | 0.0351 | 0.59110000 | 0.088230 | 3.03879e-14 | 57.70867 |
SNP, single nucleotide polymorphism; EA, effect allele; EAF, frequency of the effect allele from the corresponding study; β, the effect of the effect allele; se, the standard error of the beta; p, p-value from the GWAS.
FIGURE 2Mendelian randomization analysis results about the causal effects of COVID-19 susceptibility on stroke and ischemic stroke. CI, credibility interval.
FIGURE 3Mendelian randomization analysis results about the causal effects of COVID-19 severity (hospitalization due to COVID-19) on stroke and ischemic stroke. CI, credibility interval.
FIGURE 4MR leave-one-out sensitivity analysis for hospitalization due to COVID-19 on stroke (A) and ischemic stroke (B). MR, Mendelian randomization.
FIGURE 5Mendelian randomization analysis results about the causal effects of COVID-19 severity (severe respiratory symptoms due to COVID-19) on stroke and ischemic stroke. CI, credibility interval.
FIGURE 6MR leave-one-out sensitivity analysis for severe respiratory symptoms due to COVID-19 on stroke (A) and ischemic stroke (B). MR, Mendelian randomization.
The single nucleotide polymorphism selected for hospitalized due to COVID-19 to perform Mendelian randomization analysis.
| SNP | chr | EA_exposure | EA_outcome | β_exposure | β_outcome | EAF_ exposure | EAF_outcome | se_outcome |
| se_exposure |
|
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs115102354 | 3 | G | G | 0.44399 | 0.0323 | 0.06599 | 0.0605 | 0.0211 | 0.12600000 | 0.047412 | 7.64364e-21 | 87.69399 |
| rs12485445 | 3 | T | T | −0.11944 | −0.0235 | 0.59710 | 0.6117 | 0.0100 | 0.01834000 | 0.021135 | 1.59302e-08 | 31.93707 |
| rs13050728 | 21 | C | C | −0.15344 | −0.0006 | 0.64940 | 0.6496 | 0.0098 | 0.95350000 | 0.022858 | 1.91382e-11 | 45.06099 |
| rs13098271 | 3 | A | A | 0.14366 | 0.0058 | 0.33070 | 0.3255 | 0.0102 | 0.56790000 | 0.021502 | 2.36810e-11 | 44.63895 |
| rs143334143 | 6 | A | A | 0.22875 | 0.0042 | 0.08839 | 0.0866 | 0.0176 | 0.81280000 | 0.035580 | 1.28301e-10 | 41.33427 |
| rs17213,127 | 3 | T | T | 0.39171 | 0.0488 | 0.04387 | 0.0444 | 0.0251 | 0.05210990 | 0.061101 | 1.44700e-10 | 41.09913 |
| rs17282391 | 3 | G | G | 0.29118 | 0.0263 | 0.10570 | 0.0881 | 0.0171 | 0.12360000 | 0.037063 | 3.95185e-15 | 61.72228 |
| rs2166172 | 1 | C | C | 0.12378 | 0.0154 | 0.40990 | 0.3758 | 0.0093 | 0.09626090 | 0.022275 | 2.74202e-08 | 30.87916 |
| rs2191031 | 3 | A | A | 0.21227 | 0.0315 | 0.20510 | 0.1931 | 0.0120 | 0.00899705 | 0.030559 | 3.75059e-12 | 48.25018 |
| rs2229207 | 21 | C | C | 0.19907 | 0.0221 | 0.08092 | 0.0779 | 0.0189 | 0.24330000 | 0.035408 | 1.88499e-08 | 31.60886 |
| rs2269899 | 12 | T | T | 0.12406 | 0.0185 | 0.68500 | 0.6627 | 0.0096 | 0.05437010 | 0.022443 | 3.23802e-08 | 30.55637 |
| rs2277732 | 19 | A | A | 0.17578 | −0.0084 | 0.31440 | 0.2996 | 0.0108 | 0.43770000 | 0.023869 | 1.77787e-13 | 54.23385 |
| rs34068335 | 3 | T | T | 0.40971 | 0.0142 | 0.12320 | 0.1114 | 0.0152 | 0.35090000 | 0.032946 | 1.67109e-35 | 154.6492 |
| rs35081325 | 3 | T | T | 0.59312 | 0.0221 | 0.08108 | 0.0758 | 0.0182 | 0.22510000 | 0.036877 | 3.31665e-58 | 258.6866 |
| rs622568 | 7 | C | C | 0.15423 | 0.0137 | 0.15050 | 0.1707 | 0.0123 | 0.26590000 | 0.027696 | 2.56502e-08 | 31.01013 |
| rs74956615 | 19 | A | A | 0.27857 | −0.0176 | 0.05013 | 0.0440 | 0.0253 | 0.48590000 | 0.049110 | 1.40900e-08 | 32.17576 |
| rs75826707 | 3 | A | A | 0.62357 | 0.0189 | 0.03194 | 0.0267 | 0.0351 | 0.59110000 | 0.071436 | 2.56980e-18 | 76.1967 |
| rs7650511 | 3 | C | C | 0.23715 | 0.0088 | 0.12540 | 0.1130 | 0.0223 | 0.69360000 | 0.042347 | 2.14102e-08 | 31.3618 |
SNP, single nucleotide polymorphism; EA, effect allele; EAF, frequency of the effect allele from the corresponding study; β, the effect of the effect allele; se, the standard error of the beta; p, p-value from the GWAS.