Literature DB >> 36035065

Sharing Begins at Home: How Continuous and Ubiquitous FAIRness Can Enhance Research Productivity and Data Reuse.

William Dempsey1, Ian Foster2, Scott Fraser1, Carl Kesselman1.   

Abstract

The broad sharing of research data is widely viewed as critical for the speed, quality, accessibility, and integrity of science. Despite increasing efforts to encourage data sharing, both the quality of shared data and the frequency of data reuse remain stubbornly low. We argue here that a significant reason for this unfortunate state of affairs is that the organization of research results in the findable, accessible, interoperable, and reusable (FAIR) form required for reuse is too often deferred to the end of a research project when preparing publications-by which time essential details are no longer accessible. Thus, we propose an approach to research informatics in which FAIR principles are applied continuously, from the inception of a research project and ubiquitously, to every data asset produced by experiment or computation. We suggest that this seemingly challenging task can be made feasible by the adoption of simple tools, such as lightweight identifiers (to ensure that every data asset is findable), packaging methods (to facilitate understanding of data contents), data access methods, and metadata organization and structuring tools (to support schema development and evolution). We use an example from experimental neuroscience to illustrate how these methods can work in practice.

Entities:  

Keywords:  FAIRness; data management; reproducibility

Year:  2022        PMID: 36035065      PMCID: PMC9410569          DOI: 10.1162/99608f92.44d21b86

Source DB:  PubMed          Journal:  Harv Data Sci Rev        ISSN: 2644-2353


  25 in total

1.  On data availability, reproducibility and reuse.

Authors: 
Journal:  Nat Cell Biol       Date:  2017-03-31       Impact factor: 28.824

2.  How community has shaped the Protein Data Bank.

Authors:  Helen M Berman; Gerard J Kleywegt; Haruki Nakamura; John L Markley
Journal:  Structure       Date:  2013-09-03       Impact factor: 5.006

Review 3.  FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research.

Authors:  Bridget D Samuels; Robert Aho; James F Brinkley; Alejandro Bugacov; Eleanor Feingold; Shannon Fisher; Ana S Gonzalez-Reiche; Joseph G Hacia; Benedikt Hallgrimsson; Karissa Hansen; Matthew P Harris; Thach-Vu Ho; Greg Holmes; Joan E Hooper; Ethylin Wang Jabs; Kenneth L Jones; Carl Kesselman; Ophir D Klein; Elizabeth J Leslie; Hong Li; Eric C Liao; Hannah Long; Na Lu; Richard L Maas; Mary L Marazita; Jaaved Mohammed; Sara Prescott; Robert Schuler; Licia Selleri; Richard A Spritz; Tomek Swigut; Harm van Bakel; Axel Visel; Ian Welsh; Cristina Williams; Trevor J Williams; Joanna Wysocka; Yuan Yuan; Yang Chai
Journal:  Development       Date:  2020-09-21       Impact factor: 6.868

Review 4.  Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.

Authors:  Jitin Singla; Kyle M McClary; Kate L White; Frank Alber; Andrej Sali; Raymond C Stevens
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

5.  Recombinant probes for visualizing endogenous synaptic proteins in living neurons.

Authors:  Garrett G Gross; Jason A Junge; Rudy J Mora; Hyung-Bae Kwon; C Anders Olson; Terry T Takahashi; Emily R Liman; Graham C R Ellis-Davies; Aaron W McGee; Bernardo L Sabatini; Richard W Roberts; Don B Arnold
Journal:  Neuron       Date:  2013-06-19       Impact factor: 17.173

6.  Ten simple rules for reproducible computational research.

Authors:  Geir Kjetil Sandve; Anton Nekrutenko; James Taylor; Eivind Hovig
Journal:  PLoS Comput Biol       Date:  2013-10-24       Impact factor: 4.475

7.  Reproducible big data science: A case study in continuous FAIRness.

Authors:  Ravi Madduri; Kyle Chard; Mike D'Arcy; Segun C Jung; Alexis Rodriguez; Dinanath Sulakhe; Eric Deutsch; Cory Funk; Ben Heavner; Matthew Richards; Paul Shannon; Gustavo Glusman; Nathan Price; Carl Kesselman; Ian Foster
Journal:  PLoS One       Date:  2019-04-11       Impact factor: 3.240

8.  Regional synapse gain and loss accompany memory formation in larval zebrafish.

Authors:  William P Dempsey; Zhuowei Du; Anna Nadtochiy; Colton D Smith; Karl Czajkowski; Andrey Andreev; Drew N Robson; Jennifer M Li; Serina Applebaum; Thai V Truong; Carl Kesselman; Scott E Fraser; Don B Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-18       Impact factor: 11.205

9.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

10.  Challenges for assessing replicability in preclinical cancer biology.

Authors:  Timothy M Errington; Alexandria Denis; Nicole Perfito; Elizabeth Iorns; Brian A Nosek
Journal:  Elife       Date:  2021-12-07       Impact factor: 8.140

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  2 in total

Review 1.  FaceBase: A Community-Driven Hub for Data-Intensive Research.

Authors:  R E Schuler; A Bugacov; J G Hacia; T V Ho; J Iwata; L Pearlman; B D Samuels; C Williams; Z Zhao; C Kesselman; Y Chai
Journal:  J Dent Res       Date:  2022-07-31       Impact factor: 8.924

2.  Promoting validation and cross-phylogenetic integration in model organism research.

Authors:  Keith C Cheng; Rebecca D Burdine; Mary E Dickinson; Stephen C Ekker; Alex Y Lin; K C Kent Lloyd; Cathleen M Lutz; Calum A MacRae; John H Morrison; David H O'Connor; John H Postlethwait; Crystal D Rogers; Susan Sanchez; Julie H Simpson; William S Talbot; Douglas C Wallace; Jill M Weimer; Hugo J Bellen
Journal:  Dis Model Mech       Date:  2022-09-20       Impact factor: 5.732

  2 in total

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