| Literature DB >> 36033958 |
Arman Rahimmi1,2, Fardin Fathi2,3, Bahram Nikkhoo4,5, Farzad Soleimani2, Mohammadbagher Khademerfan1,2.
Abstract
Objectives: It is important to find novel therapeutic molecular targets for curing Parkinson's disease (PD). Accordingly, this study aimed to evaluate the effect of over-expression of the survivin gene, a gene frequently reported as neuroprotective, on the in vitro model of PD. Materials andEntities:
Keywords: Apoptosis; Autophagy; Oxidative stress; Parkinson’s disease; Survivin
Year: 2022 PMID: 36033958 PMCID: PMC9392565 DOI: 10.22038/IJBMS.2022.64345.14165
Source DB: PubMed Journal: Iran J Basic Med Sci ISSN: 2008-3866 Impact factor: 2.532
The sequences of primer sets used to amplify the genes in this study
| # | Gene | Forward primer (Tm) | Reverse primer (Tm) | Product length |
|---|---|---|---|---|
| 1 | AMPK | CCCTTCCATTTGATGATGACC (55.9) | CCCTGATATCTTTGATTGTGG (55.4) | 159 |
| 2 | ATG7 | GTTGGATGGGAAAAGAACCAG (56.8) | TGTCCAAGTCTAAAGTAGGAAC (54.7) | 151 |
| 3 | BAX | TTTTGCTTCAGGGTTTCATCC (55.6) | TGCAGCTCCATGTTACTGTC (56.5) | 157 |
| 4 | BCL2 | ATGCATTGTCAGTGATGTACC (56.6) | TTCCCTTTGGCAGTAAATAGC (56.2) | 157 |
| 5 | Caspase3 | CAAAGATCATACATGGAAGCG (54.6) | GCTGCATCGACATCTGTAC | 163 |
| 6 | Caspase8 | AGACTCCAGGAAAAGAGAATG (56.6) | AGTTCCCTTTCCATCTCCTC | 131 |
| 7 | Caspase9 | CCAGAGATTCGCAAACCAG (55.8) | TTGTTGATAATGAGGCAGTGG (54.9) | 167 |
| 8 | Catalase | CAAGCTGGTTAATGCAAATGG (54.9) | GGAGGGGTACTTTCCTGTG | 169 |
| 9 | CateninB | CTCATCCCACTAATGTCCAG (55.2) | CAGCCTTATTAACCACCACC (56.3) | 165 |
| 10 | GAPDH | GACATCAAGAAGGTGGTGAAG (56.6) | CTTGACAAAGTGGTCGTTGAG (54.6) | 159 |
| 11 | RPS18 | GTGGGCCGAAGATATGCTC (58.1) | ATCTTGTACTGGCGTGGATTC (59.3) | 131 |
| 12 | mTOR | AACCATGTCCTAAGCTGTG | CTTATGGGCGAAGTCCTTTG (55.2) | 162 |
| 13 | P53 | ACTGACATTCTCCACTTCTTG (57.0) | CGGGACAAAGCAAATGGAAG (57.6) | 147 |
| 14 | SMAC | GACGATTGGCTTTGGAGTAAC | GAGAGAGAAAGGTAGAGGTGC (57.3) | 134 |
| 15 | SOD1 | CAGGTCCTCACTTTAATCCTC (55.4) | AATGATGCAATGGTCTCCTG (56.4) | 161 |
| 16 | Survivin | CACCGCATCTCTACATTCAAG | GTCTGGCTCGTTCTCAGTG | 111 |
| 17 | Vector | GGATAGCGGTTTGACTCACG | CCAGCTCCTTGAAGCAGAAG | 451 |
Figure 1Microscopic figure of SH-SY5Y cells. A) The green cells are SH-SY5Y cells transfected by the pCDH vector and contain both the survivin gene and the green fluorescent protein (GFP) gene. B) SH-SY5Y cells stained with DApi stain. C) A merged figure combining Figures A and B
Figure 3Total anti-oxidant capacity of the experimental groups of SH-SY5Y cell line. Data were expressed as a percent of the control group (Healthy normal group). Data are presented as mean ± standard deviation (n=3 biological replicates). ANOVA test was recruited. P-value<0.05 was considered significant. ***P-value at <0.001 represents a significant difference with the healthy normal group. ^^^P-value at <0.001 represents a significant difference with the Rotenone group
Figure 4Expression level of survivin gene in the experimental groups of SH-SY5Y cell line. The results were normalized to GAPDH and the data were expressed as a percent of the control group (Healthy normal group). Data are presented as mean ± standard deviation (n=3 biological replicates). ANOVA test was recruited. P-value<0.05 was considered significant. *P-values at<0.05, **P-values at <0.01, and ***P-values at <0.001 represent significant differences with healthy normal group. ^P-values at <0.05, ^^P-values at <0.01, and ^^^P-values at <0.001 represent significant differences with Rotenone group
Figure 5Expression levels of (A) anti-oxidant genes, (B) apoptosis genes, (C) survivin-related genes, and (D) autophagy genes in the experimental groups of the SH-SY5Y cell line. The results were normalized to GAPDH and the data were expressed as a percent of the control group (Healthy normal group). Data are presented as mean ± standard deviation (n=3 biological replicates). ANOVA test was recruited. P-value<0.05 was considered significant. *P-values at <0.05, **P-values at <0.01, and ***P-values at <0.001 represent significant differences with healthy normal group. ^P-values at <0.05, ^^P-values at <0.01, and ^^^P-values at <0.001 represent significant differences with Rotenone group
Figure 6Assessment of cell death by Annexin V-PE binding and 7AAD uptake in contour plot of flow cytometry. The experimental groups are presented according to the order mentioned earlier in Methods section 2.4: (A) Healthy normal group, (B) Rotenone group, (C) Rotenone+Survivin, (D) Rotenone+Null vector, (E) Survivin, (F) Null vector, (G) Rotenone vehicle. Q1:Necrosis, Q2: Late Apoptosis, Q3: Early Apoptosis, Q4: Live Cells. (H) Apoptosis levels in the experimental groups of SH-SY5Y cell line. Data were expressed as the percent of apoptotic cells. Data are presented as mean ± standard deviation (n=3 biological replicates). ANOVA test was recruited. P-value < 0.05 was considered as significant. ***P-value at <0.001 represents a significant difference with the healthy normal group. ^^^P-value at <0.001 represents a significant difference with the Rotenone group
Figure 7Cell cycle analysis with flow cytometry & propidium iodide. The experimental groups are presented according to the order mentioned earlier in the Methods section (2.4): (A) Healthy normal group, (B) Rotenone group, (C) Rotenone+Survivin, (D) Rotenone+Null vector, (E) Survivin, (F) Null vector, (G) Rotenone vehicle. (H) G2/G1 ratio in the experimental groups of SH-SY5Y cell line. Data were expressed as the percent of apoptotic cells. Data are presented as mean ± standard deviation (n=3 biological replicates). ANOVA test was recruited. P-value<0.05 was considered significant. ***P-value at <0.001 represents a significant difference with the healthy normal group. ^^^P-value at <0.001 represents a significant difference with the Rotenone group ROT: rotenone; SURV: survivin; VEC: null vector; ROTVEH: rotenone vehicle
Results of Leven's test to assess the homogeneity of variances in statistical assessments
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* P<0.05 indicated non-normal distribution and lack of homogeneity of variances