| Literature DB >> 36033316 |
James Abugri1, Joseph Ayariga2, Samuel Sunyazi Sunwiale1, Cletus Adiyaga Wezena3, Julien Agyemang Gyamfi1, Michael Adu-Frimpong1, Godfred Agongo1, Julius Tieroyaare Dongdem4, Daniel Abugri5, Bismarck Dinko6.
Abstract
There is an unmet need to unearth alternative treatment options for malaria, wherein this quest is more pressing in recent times due to high morbidity and mortality data arising mostly from the endemic countries coupled with partial diversion of attention from the disease in view of the SARS-Cov-2 pandemic. Available therapeutic options for malaria have been severely threatened with the emergence of resistance to almost all the antimalarial drugs by the Plasmodium falciparum parasite in humans, which is a worrying situation. Artemisinin combination therapies (ACT) that have so far been the mainstay of malaria have encountered resistance by malaria parasite in South East Asia, which is regarded as a notorious ground zero for the emergence of resistance to antimalarial drugs. This review analyzes a few key druggable targets for the parasite and the potential of specific inhibitors to mitigate the emerging antimalarial drug resistance problem by providing a concise assessment of the essential proteins of the malaria parasite that could serve as targets. Moreover, this work provides a summary of the advances made in malaria parasite biology and the potential to leverage these findings for antimalarial drug production.Entities:
Keywords: Apical membrane antigen; Dipeptidyl aminopeptidases; Glucose transporters; Malaria; Plasmepsins; Plasmodium rhomboids; Proteases; Schizogony; Subtilisin-like proteins
Year: 2022 PMID: 36033316 PMCID: PMC9398786 DOI: 10.1016/j.heliyon.2022.e10390
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Figure 1Life Cycle of P. falciparum indicating stage specific expression of essential parasite proteins. The malaria parasite expresses crucial stage specific proteins which facilitates its survival in the human host. Typical among these are Falcipain-1 (FP1), Falcipain-2 (FP2), Plasmepsin (PM) II and IV among others. The roles of these proteins are indicated in (Table 1) (Figure 1 created using Biorender.com).
Important proteins of the malaria parasite.
| Abbreviations | Name | Activity | Reference |
|---|---|---|---|
| FP1 | falcipain-1 | Host Cell Invasion | ( |
| FP2 | falcipain-2 | Merozoite egression | ( |
| PII | plasmepsin II | Heme conversion to hemozoin | ( |
| PIV | plasmepsin IV | Heme conversion to hemozoin | ( |
| HAP | histo aspartic protease | Heme conversion to hemozoin | ( |
| HDP | heme detoxification protein | Heme conversion to hemozoin | ( |
| UBA1 | Ubiquitin Activating enzyme 1 | Ubiquitin activation is essential for schizont maturation in | ( |
| PfPFT | Trophozoite differentiation to schizonts and schizonts to ring transitions | ( |
Figure 2Protein network of the interaction partners for falcipain 2a. This protein network shows the closest proteins that associate with it and may imply a functional relationship with interacting partners such as Plasmepsins (PM) I, III and IV, falcipain 2b. This was generated using string-db.org. Legend: Q8I6U4: Falcipain 2a-cysteine protease and haemoglobinase, Q8I6V3: Plasmepsin II, Q8I6U5: Falcipain 2b-cysteine protease and haemoglobinase, Q7KQM4: Plasmepsin-I, Q8IM15: Plasmepsin III, Q81570: Independent K + K + translocation inorganic pyrophosphatase of type V, Q8IJ74: Haloacid dehalogenase-like hydrolase, Q8I2M3: Uncharacterized protein, Q8IKC8: Exported protein 2, Q8IM16: Plasmepsin IV, Q9U0J2: Chaperone protein DnaJ.
Figure 3Protein network interaction diagram for SUB2. Subtilisin-like protein 2 and its closest interacting partners. This network is suggestive and predictive of the close association of Subtilisin-like protease 2 with putative photosensitised INA-labeled protein 1, putative RNA binding protein, putative Kelc motif containing protein, putative coronin, Myosin motor domain containing myosin pfm-b domain and belongs to the TRAFAC class myosin-kinesin ATPase superfamily, trophozoite stage antigen, erythrocyte binding antigen -181, Zinc finger C-x8-C-x5-C-x3-H type, putative serine/threonine protein kinase, putative reticulocyte binding protein 3 and erythrocyte binding antigen -140. Network created using cytoscape 3.8.1. Legend: SUB2 = Subtilisin-like protease 2, PFB0475c = Conserved Uncharacterized protein, PPPDE = PPPDE Peptidase, PhIL1 = Photosensitized INA-Labeled Protein 1, Putative, RNAbp = RNA binding protein, putative, KmP = Kelc motif containing protein, putative, Coronin = coronin, Myosin pfm-b = Myosin motor domain-containing protein, an unconventional myosin pfm-b; , belonging to the TRAFAC class myosin-kinesin ATPase superfamily, Tsa = Trophozoite stage antigen, eba-181 = erythrocyte binding antigen -181, ZF C-x8. = Zinc finger C-x8-C-x5-C-x3-H type, putative, S/TPK = Serine/threonine protein kinase, putative, Rh3 = Reticulocyte-binding protein 3, eba-140 = erythrocyte binding antigen -140.
Figure 4Protein network interaction diagram for Rhomboid protease (ROM7). ROM7 possesses serine-type endopeptidase activity, which activates its serine nucleophile by a proton and performs hydrolysis of internal, alpha-peptide bonds in a polypeptide chain (Neafsey et al., 2013). This protein has shown putative interactions with ROM8 and ROM9. The Plasmodium rhomboid proteases are involved in most enzymatic events during the invasive stages of the malaria lifecycle. The invasion of Plasmodium depends on the parasite transmembrane adhesins and these adhesins have to be processed by cleavage to be activated by PfROMs such as PfROM1, PfROM4 PfROM7, etc (Baker et al., 2006). Interaction network created using cytoscape 3.8.1. Legend: ROM = Rhomboid protease, MAL8P1.45 = Uncharacterized protein.
Figure 5Protein network interaction diagram for tRNA binding protein (tRNAbp). The tRNAbp interacts closely with Histone acetyltransferase, DNA replication licensing factor MCM5 belongs to the MCM family, methyl transferase, nucleolar peribosomal GTPase, Rhodanese-like protein, homologue of ubiquitin-related modifier, ubiquitin binding protein, and ubiquitin activating enzyme E1. Interaction network created using cytoscape 3.8.1. Legend: TSC = Tubulin-specific chaperone, putative, MAP1 = Microtubule-associated protein 1, putative, UBLP = Ubiquitin-like protein, UB_N8H = homologue of the nedd8 protein, putative, UBRMH = homologue of the ubiquitin-related modifier, pfSUMO = small ubiquitin-related modifier, putative, UB_AE = Ubiquitin activating enzyme, NLP4 = Nuclear pore associated protein 4, putative, UBAEe1 = Ubiquitin activating enzyme E1, putative UBAEeAos1 = Ubiquitin activating enzyme (E1), subunit Aos1, PfAOP = 1 cy peroxidoxin, UBAbp = UBA/THIF type NAD/FAD binding protein, putative, tRNAbp = cytoplasmic tRNA 2- thiolation protein 1, HAT = Histone acetyltransferase, putative, MCM5 = DNA replication licensing factor MCM5, putative, MT = methyl transferase, putative, DMBP = DPH-type MB domain-containing protein, NPG = Nucleolar Peribosomal GTPase, putative, RLP = Rhodanese like protein, putative, pfSUMO.
Important proteins, site of localisation or release, function and modes of inhibition.
| Proteins | Sub | Site | Function | Inhibition/Inhibitor | Ref. |
|---|---|---|---|---|---|
| Serine repeat antigen (SERA) | SERA5 | Exported to erythrocytes (within the parasitophorus vacuole) | Regulate egress timing to coincide with maturation of merozoites | Conditional knockout (KO) produces an immature egress phenotype leading to a decrease in invasion efficiency | ( |
| SERA6 | Proteolytically activated by SUB1 to disrupt red blood cell membranes | ( | |||
| SERA8 | Expressed in sporozoites | Inhibitors prevent the escape of sporozoites from oocysts | ( | ||
| Subtilisin-like Protease (SUB) | SUB1 | Erythrocytes, Hepatocytes | Involved in the cleavage of parasitophorous vacuole membrane, rhoptry, and erythrocyte membrane proteins | ( | |
| SUB2 | Secreted by micronemes onto the surface of the merozoite | Sheddase involved in the shed of the protein coat of merozoite | ( | ||
| PfROM4 | Located on the surface of the parasite | Cleaves adhesin proteins involved in parasite attachment to the erythrocyte surface | ( | ||
| PfROM1 | Found at the apical end of merozoites in liver stages | Cleaves apical membrane antigen 1 | ( | ||
| Merozoite Surface Protein (MSP) | MSP1 | Destabilizes the erythrocyte cytoskeleton | Cleavage reduces parasite egress | ( | |
| Dipeptidyl aminopeptidase (DPAP) | DPAP2 | Expressed in gametocytes | Regulates parasite egress, and efficient erythrocyte invasion by parasites | Knockout (KO) decreases gamete egress | ( |
| DPAP3 | Erythrocytes | erythrocyte invasion | DPAP3 inhibitors block egress upstream of SUB1 activation. | ( | |
| Aspartyl protease (Plasmepsins, PM) | PM I | Erythrocytic stage | Essential in partial degradation of haemoglobin | Knockout has minimal effect on parasite replication | ( |
| PM II | Erythrocytic stage | Essential in partial degradation of haemoglobin | Knockout has minimal effect on parasite replication | ( | |
| PM III | Erythrocytic stage | Essential in haemoglobin degradation into smaller oligopeptides | Knockout has minimal effect on parasite replication | ( | |
| PM IV | Erythrocytic stage | Essential in haemoglobin degradation into smaller oligopeptides | Knockout has minimal effect on parasite replication | ( | |
| PM V | An endoplasmic-resident integral membrane protein | For protein export | Inhibition blocks biological functions such as protein trafficking on invaded host cell surface | ( | |
| PM VI | Expressed in transmission-stage parasites | Important in midgut sporozoite development and function | Knockouts prevent sporozoite formation and thus blocks transmission | ( | |
| PM VII | Located in cytoplasm of parasite's sporozoites and ookinetes | Function is not fully known but might play role in midgut transversal | ( | ||
| PM VIII | Expressed in transmission-stage parasites | Function is not known | Knockout prevents sporozoite motility | ( | |
| PM IX | Localized to rhoptries | For RBC invasion | |||
| PM X | Localized to the exonemes | PM X is involved in both egress and invasion | Inhibitors prevent parasite progression from the liver to erythrocytes | ( | |
| Apical Membrane Antigen (AMA) | AMA1 | Secreted onto the merozoite surface | bridges interactions between components of the motor and rhoptry-derived proteins that are inserted into the RBCM after reorientation | ( |
Figure 6A Schematic showing the mechanism of action of plasmepsins I and II in the destruction of erythrocytes of P. falciparum. This illustrates the role of Plasmepsin I and II in the destruction of spectrin and actin. A) Amplified plasma membrane with imbedded spectrin, B) expanded spectrin network with a glycophorin anchor, and C) vertically flipped plasma membrane with the spectrin complex network and other anchored moieties making a suitable surface for the actions of plasmepsins. D) Plasmepsin I & II act on the spectrin complex leading to cleavage.
Figure 7Illustration of “spectrinase activity” of plasmepsin II (PDB ID: 1SME) and falcipain of the malarial parasite on the human Erythroid Spectrin molecule (PDB ID:1S35). The spectrin linker region was extracted using PyMol (Schrödinger, Inc.), where it was prepared as a ligand and docked onto the active site of Plasmepsin II chain B using PyRx software. Relative free binding energies of the interaction between Plasmepsin II and spectrin indicated a positive interaction between the two molecules indicative of the role of plasmepsin II in spectrin cleavages into short peptides.