| Literature DB >> 36032738 |
Shima Fayaz1,2, Fariborz Bahrami2, Pezhman Fard-Esfahani1, Parviz Parvizi3, Golnaz Bahramali4, Soheila Ajdary2.
Abstract
Background: Visceral leishmaniasis (VL) is a lethal parasitic disease, transmitted by sand fly vectors. Immunomodulatory properties of sand fly saliva proteins and their protective effects against Leishmania infection in pre-exposed animals suggest that a combination of an antigenic salivary protein along with a Leishmania antigen can be considered for designing a vaccine against leishmaniasis.Entities:
Keywords: Apyrase; Immunoinformatics; Leishmania infantum; Phlebotomus kandelakii; Vaccine
Year: 2022 PMID: 36032738 PMCID: PMC9363246 DOI: 10.18502/ijpa.v17i2.9530
Source DB: PubMed Journal: Iran J Parasitol ISSN: 1735-7020 Impact factor: 1.217
Fig. 1:Schematic representation of the immunoinformatics predictions
Number of the antigenic peptides of the 3 fusion models
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|---|---|---|---|---|
| CTL epitopes | HTL epitopes | CTL epitopes | HTL epitopes | |
| Model 1 | 6 | 2 | 25 | 141 |
| LiHyV (10–285)- PQDPP- PkanAp (21–329) | ||||
| Model 2 | 7 | 8 | 34 | 153 |
| LiHyV (1–528)- PQDPP- PkanAp (21–329) | ||||
| Model 3 | 5 | 6 | 22 | 70 |
| LiHyV (350–522)- PQDPP- PkanAp (21–329) | ||||
Antigenicity score ≥0.45
Predicted fusion models from L. infantum hypothetical protein (LiHyV) and P. kandelakii salivary apyrase (PkanAp) with the linker (PQDPP). (The first 20 amino acids of PkanAp detected as a signal peptide were excluded)
Fig. 2:Phylogenetic tree analysis comparing P. kandelakii salivary apyrase (PkanAp) (black circle) with the other apyrases family. Amino acid sequences were compared based on the maximum likelihood method with 1000 bootstrap replicates
Antigenic epitopes of Model 1 interacting with human HLA-I
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|---|---|---|---|---|---|
| ARLSMNMAI | 78–86 | HLA-B | 0.08 | 0.4780 | −0.4725 |
| HLA-B | 0.8 | ||||
| RCSSALVSI | 211–219 | HLA-A | 0.6 | 0.5634 | −0.25433 |
| LALDSNATV | 127–135 | HLA-B | 0.4 | 1.0046 | −0.09277 |
| ALLCAVVVL | 3–11 | HLA-A | 0.9 | 0.5302 | 0.07807 |
| SAVESGALF | 265–273 | HLA-A | 0.59 | 0.6385 | 0.01149 |
| DVTMSDASF | 26–34 | HLA-A | 0.58 | 0.7252 | −0.36796 |
| ALVSINVPL | 215–223 | HLA-A | 0.9 | 0.8812 | −0.0012 |
| CERCSSALV | 209–217 | HLA-B | 0.1 | 0.932 | −0.32774 |
| MSDASFDDY | 29–37 | HLA-A | 0.11 | 1.0868 | 0.02735 |
| DASFDDYTM | 31–39 | HLA-B | 0.5 | 1.2381 | 0.12614 |
| MPANSDIRI | 100–108 | HLA-B | 0.2 | 1.4794 | 0.00853 |
| ELIYFNGKL | 351–359 | HLA-A | 0.66 | 0.9218 | 0.04999 |
| ERNGQTVTY | 549–557 | HLA-B | 0.86 | 1.2339 | 0.01326 |
| ESGHITNIY | 436–444 | HLA-A | 0.65 | 0.6599 | 0.28199 |
| FTQNSYHGL | 337–345 | HLA-B | 0.51 | 0.9496 | −0.16159 |
| GAELSELIY | 346–354 | HLA-A | 0.73 | 0.9649 | 0.02289 |
| IERNGQTVT | 548–556 | HLA-B | 0.29 | 1.3453 | −0.00887 |
| KEISESGHI | 432–440 | HLA-B | 0.33 | 1.6263 | −0.134 |
| NIYWENQYK | 442–450 | HLA-A | 0.67 | 0.7244 | 0.21318 |
| HLA-A | 0.79 | ||||
| NRFTSIVKY | 307–315 | HLA-B | 0.17 | 0.5829 | −0.04992 |
| HLA-B | 0.6 | ||||
| SESGHITNI | 435–443 | HLA-B | 0.29 | 1.2185 | 0.16616 |
| SGHITNIYW | 437–445 | HLA-B | 1 | 1.5017 | 0.28629 |
| SIVKYGELK | 311–319 | HLA-A | 0.44 | 0.9789 | −0.09728 |
| SPRKNIWVF | 471–479 | HLA-B | 0.37 | 1.1449 | 0.12984 |
| YFNGKLYTI | 354–362 | HLA-A | 0.43 | 2.8865 | −0.16888 |
Model 1 [LiHyV (10–285)-PQDPP-PkanAp (21–329)].
epitopes with 60% conservancy,
fully conserved epitopes.
Antigenicity score ≥0.45.
Positions of peptides: 1–276 aa of LiHyV, 277–281 aa of linker, 282–590 aa of PkanAp
Conserved and antigenic promiscuous T-cell epitopes of Model 1 interacting with human HLA-II
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|---|---|---|---|
| ADVVTVQLINS-QVSG | 48–62 | HLA-DRB1 | 0.5197 |
| 94–108 | 1.3287 | ||
| ITLSGVMPANSDIRI | HLA-DRB1 | ||
| MPANSDIRIVATTGS | 100–114 | HLA-DRB1 | 0.8680 |
| PANSDIRIVATTGSL | 101–115 | DRB1 | 0.7589 |
| ANSDIRIVATTGSLA | 102–116 | DRB1 | 0.8213 |
| NSDIRIVATTGSLAP | 103–117 | HLA-DRB1 | 0.8890 |
| SDIRIVATTGSLAPA | 104–118 | DRB1 | 0.7071 |
| DIRIVATTGSLAPAQ | 105–119 | DRB1 | 0.8234 |
| IRIVATTGSLAPAQS | 106–120 | HLA-DRB1 | 0.4904 |
| AQSLFDFSGLALDSN | 118–132 | HLA-DRB1 | 0.5132 |
| 119–133 | 0.5365 | ||
| QSLFDFSGLALDSNA | 120–134 | 0.4744 | |
| 121–135 | 0.5750 | ||
| SLFDFSGLALDSNAT | |||
| LFDFSGLALDSNATV | |||
| FDFSGLALDSNATVM | 122–136 | HLA-DRB1 | 0.8913 |
| HLA-DRB1 | |||
| DFSGLALDSNATVMV | 123–137 | HLA-DRB1 | 1.2197 |
| 124–138 | DRB1 | 1.4112 | |
| FSGLALDSNATVMVE | 125–139 | HLA-DRB1 | 1.3744 |
| 126–140 | DRB1 | 1.3111 | |
| SGLALDSNATVMVEN | HLA-DRB1 | ||
| GLALDSNATVMVENT | |||
| VDY- | 204–218 | HLA-DRB1 | 0.8439 |
| GRCERCSSALVS | 205–219 | DRB1 | 0.7467 |
| DYGRCERCSSALVSI | 206–220 | HLA-DRB1 | 0.7573 |
| YGRCERCSSALVSIN | DRB1 | ||
| HLA-DRB1 | |||
| ERCSSALVSINVPLV | HLA-DRB1 | ||
| RCSSALVSINVPLVV | 210–224 | DRB1 | 0.6017 |
| CSSALVSINVPLVVD | 211–225 | HLA-DRB1 | 0.7988 |
| SSALVSINVPLVVDA | 212–226 | DRB1 | 0.7077 |
| SALVSINVPLVVDAS | 213–227 | HLA-DRB1 | 0.8872 |
| ALVSINVPLVVDASS | 214–228 | 0.7955 | |
| 215–229 | 0.6058 | ||
| LVSINVPLVVDASSL | 216–230 | 0.5107 | |
| VSINVPLVVDASSLF | 217–231 | HLA-DRB1 | 0.6508 |
Model 1 [LiHyV (10–285)-PQDPP-PkanAp (21–329)].
Positions of peptides: 1–276 aa of LiHyV, 277–281 aa of linker, 282–590 aa of PkanAp
Population coverage of Model 1
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|---|---|---|---|---|
| Iran | 87.76 | 8.07 | 77.63 | 30.01 |
| Southwest Asia | 80.9 | 6.76 | 94.07 | 27.99 |
| Europe | 96.65 | 8.68 | 79.07 | 32.48 |
| North America | 89.28 | 6.98 | 76.73 | 30.03 |
| South America | 64.96 | 3.47 | 58.8 | 15.83 |
| North Africa | 73.54 | 5.63 | 81.61 | 35.12 |
| World | 91.08 | 7.15 | 73.0 | 26.98 |
PPC: Percent of Population Coverage
Fig. 3:Ramachandran plot indicating the percentages of the residues in the favored and allowed regions
Fig. 4:Structural analyses of Model 1. (A) Tertiary structure of protein Model 1: yellow, red, and green colors indicates LiHyV (10–285), PQDPP (rigid linker), and PkanAp (21–329), respectively (B) ProSA plot in which the black spot represents the overall quality of the final model compared to the structure of proteins with a similar size that was determined by X-ray and NMR