| Literature DB >> 36028856 |
Carolina Barnett1,2,3, Elisa Candido4, Branson Chen4, Priscila Pequeno4, Patricia C Parkin5,6, Karen Tu5,7,8,9.
Abstract
BACKGROUND: There is limited population-based data on Neurofibromatosis type 1 (NF1) in North America. We aimed to develop and validate algorithms using administrative health data and electronic medical records (EMRs) to identify individuals with NF1 in Ontario, Canada.Entities:
Keywords: Administrative database; Algorithm; EMR; NF1
Mesh:
Year: 2022 PMID: 36028856 PMCID: PMC9419337 DOI: 10.1186/s13023-022-02493-5
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.303
Fig. 1Chart abstraction and validation. Figure depicts the process of chart abstraction and validation, after initial search in 273,440 eligible records from the EMRCP database
Demographic characteristics of eligible EMRPC individuals in the cohort used for algorithm development
| Definitive NF1 | Possible NF1 | Not NF1 | |
|---|---|---|---|
| Age (mean ± SD) | 39.3 ± 23.0 | 41.1 ± 24.8 | 43.9 ± 23.0 |
| Sex (female) | 36 (50.7%) | 19 (51.4%) | 152,514 (55.8%) |
| Follow up time, years (mean ± SD) | 7.09 ± 3.2 | 8.97 ± 5.3 | 6.45 ± 3.5 |
| Rural | 10 (14.1%) | 8 (21.6%) | 49,464 (18.1%) |
| Urban | 61 (85.9%) | 29 (78.4%) | 222,819 (81.5%) |
| Income quintile 1 | 14 (19.7%) | 13 (35.1%) | 44,464 (16.3%) |
| Income quintile 2–3 | 24 (33.8%) | 10 (27.0%) | 102,704 (37.6%) |
| Income quintile 4 | 14 (19.7%) | 6 (16.2%) | 50,024 (21.2%) |
| Income quintile 5 | 19 (26.8%) | 8 (21.6%) | 66,778 (24.4%) |
Income quintile using nearest census based neighbourhood
EMRPC electronic medical record database
Performance of selected algorithms to identify individuals with NF1
| Algorithm | True positive | True negative | False negative | False positive | Sensitivity (95% CI) | Specificity (95% CI) | PPV (95% CI) | NPV (95% CI) |
|---|---|---|---|---|---|---|---|---|
| EMR search | 60 | 273,354 | 11 | 15 | 85 (74–92) | 100 (100–100) | 80 (69–88) | 100 (100–100) |
| Billing algorithms | ||||||||
| CIHI | 15 | 273,325 | 56 | 6 | 21 (12–31) | 100 (100–100) | 71 (52–91) | 100 (100–100) |
| CIHI or NARCS or SDS | 22 | 273,321 | 49 | 10 | 31 (20–42) | 100 (100–100) | 69 (53–85) | 100 (100–100) |
| 1 OHIP ever | 65 | 125,703 | 6 | 147,628 | 92 (85–98) | 46 (46–46) | 0 (0–0.1) | 100 (100–100) |
| CIHI or 2 OHIP* ever | 58 | 218,349 | 13 | 54,982 | 82 (73–91) | 80 (80–80) | 0.1 (0.1–0.1) | 100 (100–100) |
| CIHI or 4 OHIP in 3 y | 45 | 246,079 | 26 | 27,252 | 90 (90–90) | 63 (52–75) | 0.2 (0.1–0.2) | 100 (100–100) |
| OHIP 225 & OHIP 758* ever | 6 | 273,319 | 65 | 12 | 9 (2–15) | 100 (100–100) | 33 (12–55) | 100 (100–100) |
| CIHI or 2 OHIP* ever | 55 | 221,560 | 16 | 51,771 | 70 (58–80) | 81 (91–81) | 0.1 (0.1–0.2) | 100 (100–100) |
OHIP codes included: 192, 216, 225, 709, 758
CIHI Canadian Institute for Health Information, EMR electronic medical record, NARCS national ambulatory care reporting system
*Code billed by selected specialties (neurology, neurosurgery, pediatrics, genetics, plastic surgery and general surgery)
Cumulative patient profile search terms for identification individuals with NF1 from EMR database
| Search inclusion terms | Selected exclusion terms |
|---|---|
| ‘NF1', 'NF1', 1 | ‘negative for' or ‘no evidence’ or ‘no history of' |
| 'NF1[^a-z0-9]%', 1 | ‘at risk of’ ‘?early’ |
| 'NF1', '%[^a-z0-9]NF1', 1 | 'family history of' or 'FMHx' or ‘fhx’ |
| 'NF1', '%[^a-z0-9]NF1[^a-z0-9]%', 1 | 'without' ‘with out' |
| 'recklinghausen', '%recklinghausen%', 1 | ‘maternal’ or ‘paternal’ or ‘brother’ or ‘sister’ |
| 'neurofibromatosis', '%neurofibr_m_tos_s%', 1 | 'unconfirmed' 'suspect' |
| 'neurofibromatosis', '%Neuro Fibromatosis%', 1 | 'rule out' or 'r/ o' or 'r/o' |
| 'neurofibromatosis', '%Neurofibiromatosis%', 1 | ‘possible’ or ‘possibly’ or ‘probable’ |
| 'neurofibromatosis', '%neurofibomatosis%', 1 | ‘NF2’ |
Selected commonly used OHIP outpatient diagnostic billing codes in 71 patients with confirmed NF1 and 28,409 clinical encounters
| Codes | Description | Frequency | Percent of codes |
|---|---|---|---|
| 999 | No diagnosis | 9838 | 34.6 |
| 304 | Drug dependence/drug addiction | 1216 | 4.3 |
| 709 or | Other disorders of skin and subcutaneous tissue | 822 | 2.9 |
| 216 or | Dermatofibroma, pigmented nevus | ||
| 173 | Other skin malignancies | ||
| 787 | Anorexia/nausea and vomiting | 605 | 2.1 |
| 781 | Leg cramps, pain (muscle, joints) | 372 | 1.3 |
| 300 | Anxiety, depression | 347 | 1.2 |
| 192 | Malignant tumours of the nervous system outside of brain | 278 | 1.0 |
| 349 | Other diseases of the central nervous system | 266 | 0.9 |
| 401 | Essential hypertension | 241 | 0.9 |
| 758 | Autosomal anomalies, chromosomal anomalies | 141 | 0.5 |
| 225 | Benign tumours of the nervous system | 102 | 0.4 |
| 191 | Malignant brain tumours | 98 | 0.3 |
| 759 | Other congenital anomalies | 95 | 0.3 |
| 313 | Behaviour disorders of childhood and adolescence | 60 | 0.2 |
| 315 | Developmental delay | 45 | 0.2 |
Codes 709, 216 and 173 all represent common skin-related issues in NF1, and therefore were combined for these analyses