| Literature DB >> 36011282 |
Haley E Rymut1, Laurie A Rund1, Bruce R Southey1, Rodney W Johnson1,2,3, Jonathan V Sweedler2,4, Sandra L Rodriguez-Zas1,2,3,5.
Abstract
The influence of proinflammatory challenges, such as maternal immune activation (MIA) or postnatal exposure to drugs of abuse, on brain molecular pathways has been reported. On the other hand, the simultaneous effects of MIA and drugs of abuse have been less studied and sometimes offered inconsistent results. The effects of morphine exposure on a pig model of viral-elicited MIA were characterized in the prefrontal cortex of males and females using RNA-sequencing and gene network analysis. Interacting and main effects of morphine, MIA, and sex were detected in approximately 2000 genes (false discovery rate-adjusted p-value < 0.05). Among the enriched molecular categories (false discovery rate-adjusted p-value < 0.05 and -1.5 > normalized enrichment score > 1.5) were the cell adhesion molecule pathways associated with inflammation and neuronal development and the long-term depression pathway associated with synaptic strength. Gene networks that integrate gene connectivity and expression profiles displayed the impact of morphine-by-MIA interaction effects on the pathways. The cell adhesion molecules and long-term depression networks presented an antagonistic effect between morphine and MIA. The differential expression between the double-challenged group and the baseline saline-treated Controls was less extreme than the individual challenges. The previous findings advance the knowledge about the effects of prenatal MIA and postnatal morphine exposure on the prefrontal cortex pathways.Entities:
Keywords: RNA-seq; infection; opioid; pathways
Mesh:
Substances:
Year: 2022 PMID: 36011282 PMCID: PMC9407090 DOI: 10.3390/genes13081371
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Enriched pathways (Gene Set Enrichment Analysis False Discovery Rate-adjusted p-value < 0.05 and normalized enrichment score absolute value |NES| > 1.5) among genes presenting morphine (M), maternal immune activation (A), or interactions (MxA) effects in the prefrontal cortex.
| KEGG | MxA 2 | M | A | ||||
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| Pathway Type and Name | Identifier 1 | N 3 | FDR | N | FDR | N | FDR |
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| Oxidative phosphorylation | hsa00190 | 2.7 | 1 × 10−5 | −2.5 | 1 × 10−5 | −2.1 | 3 × 10−3 |
| Drug metabolism | hsa00983 | −1.8 | 2 × 10−2 | ||||
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| Protein digestion & absorption | hsa04974 | 2.3 | 3 × 10−2 | −1.9 | 6 × 10−3 | −2.2 | 1 × 10−3 |
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| Ribosome | hsa03010 | 3.0 | 1 × 10−5 | −2.1 | 2 × 10−3 | −2.3 | 1 × 10−3 |
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| Chemokine signaling | hsa04062 | −2.0 | 4 × 10−3 | −2.0 | 5 × 10−3 | 2.2 | 1 × 10−5 |
| Natural killer cell med. cytotoxic. | hsa04650 | −1.7 | 3 × 10−2 | −2.0 | 5 × 10−3 | 2.1 | 1 × 10−5 |
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| Herpes simplex infection | hsa05168 | −2.2 | 2 × 10−4 | −2.1 | 2 × 10−3 | 2.2 | 1 × 10−5 |
| Non-alcoholic fatty liver disease | hsa04932 | −2.1 | 2 × 10−3 | ||||
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| Phagosome | hsa04145 | −1.7 | 4 × 10−2 | −2.3 | 3 × 10−4 | 2.1 | 1 × 10−5 |
| Apoptosis | hsa04210 | −2.0 | 4 × 10−3 | 1.8 | 1× 10−2 | ||
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| Cell adhesion molecules | hsa04514 | −2.0 | 3 × 10−3 | −2.1 | 3 × 10−3 | 2.0 | 1 × 10−4 |
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| Long-term depression | hsa04730 | −1.7 | 5 × 10−2 | ||||
| Nicotine addiction | hsa05033 | −1.8 | 1 × 10−2 | ||||
| Parkinson disease | hsa05012 | 2.3 | 5 × 10−2 | −2.3 | 1 × 10−5 | ||
1 KEGG = Kyoto Encyclopedia of Genes and Genomes human pathway identifier. 2 MxA = morphine-by-maternal immune activation (MIA) interaction effect where NES > 0 (NES < 0) denotes gene over-expression (under-expression) in morphine-treated MIA-exposed pigs; M = morphine effect where NES > 0 (NES < 0) denotes gene over-expression (under-expression) in morphine- relative to saline-treated pigs; and A = MIA effect where NES > 0 (NES < 0) denotes gene over-expression (under-expression) in MIA relative to Control pigs. 3 N = normalized enrichment score (NES); FDR = FDR-adjusted p-value. FDR-adjusted p-value < 1 × 10−5 = 1 × 10−5. 4 Names in italics denote the pathway type.
Enriched pathways (Gene Set Enrichment Analysis False Discovery Rate-adjusted p-value < 0.1 and normalized enrichment score absolute value |NES| > 1.5) among genes profiles presenting effects of sex (S) alone or interacting with morphine (M) or maternal immune activation (A) in the prefrontal cortex.
| KEGG | AxS 2 | MxS | |||
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| Pathway Type and Name | Identifier 1 | N 3 | FDR | N | FDR |
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| Tryptophan metabolism | hsa00380 | 1.8 | 6 × 10−2 | ||
| Ether lipid metabolism | hsa00565 | −1.8 | 1 × 10−1 | ||
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| Ribosome | hsa03010 | −2.1 | 7 × 10−2 | 1.9 | 1 × 10−1 |
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| Chemokine signaling | hsa04062 | 2.0 | 6 × 10−2 | ||
| Herpes simplex infection | hsa05168 | 1.8 | 6 × 10−2 | ||
1 KEGG = Kyoto Encyclopedia of Genes and Genomes human pathway identifier. 2 AxS = MIA-by-sex interaction effect where NES > 0 (NES < 0) denotes gene over-expression (under-expression) in MIA females; MxS = morphine-by-sex interaction effect where NES > 0 (NES < 0) denotes gene over-expression (under-expression) in morphine- relative to saline-treated females. No enrichment was detected among genes with sex effects. 3 N = normalized enrichment score (NES); FDR = FDR-adjusted p-value; FDR-adjusted p-value < 1 × 10−5 = 1 × 10−5. 4 Names in italics denote the pathway type.
Log2(fold change) and False Discovery Rate-adjusted p-value (LogFC and FDR, respectively) of the genes in the prefrontal cortex that presented a significant (FDR < 0.05) interaction or main effect of morphine (M) and maternal immune activation (A) and represent the pathways enriched at FDR < 0.05 and a normalized enrichment score |NES| > 1.5.
| Gene | MxA 1 | M | A | ||
|---|---|---|---|---|---|
| Symbol | FDR | LogFC | FDR 2 | LogFC | FDR |
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| −0.4 | 2 × 10−2 | |||
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| 5 × 10−3 | ||||
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| 1 × 10−5 | 0.5 | 2 × 10−3 | ||
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| −1.4 | 1 × 10−5 | 2.1 | 1 × 10−5 | |
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| −1.4 | 1 × 10−5 | 1.7 | 1 × 10−5 | |
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| 2 × 10−2 | −1.1 | 4 × 10−5 | 2.9 | 1 × 10−5 |
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| 2.1 | 1 × 10−5 | |||
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| 1.7 | 1 × 10−5 | |||
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| 2.6 | 1 × 10−5 | |||
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| 4.9 | 1 × 10−5 | |||
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| 5 × 10−2 | 0.5 | 5 × 10−3 | ||
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| 5.5 | 1 × 10−5 | |||
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| 5 × 10−2 | −0.6 | 8 × 10−5 | 1.4 | 1 × 10−5 |
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| −1.1 | 2 × 10−2 | 5.6 | 1 × 10−5 | |
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| 2.3 | 1 × 10−5 | |||
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| 1 × 10−6 | −0.6 | 2 × 10−3 | 1.4 | 1 × 10−5 |
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| 1.9 | 1 × 10−5 | |||
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| 1 × 10−6 | −1.1 | 1 × 10−5 | −0.6 | 8 × 10−5 |
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| 0.4 | 3 × 10−2 | 0.5 | 9 × 10−3 | |
1 MxA = morphine-by-maternal immune activation (MIA) interaction effect; M = morphine effect where LogFC > 0 (LogFC < 0) denotes gene over-expression (under-expression) in morphine- relative to saline-treated pigs; and A = MIA effect where LogFC > 0 (LogFC < 0) denotes gene over-expression (under-expression) in MIA-exposed relative to Control pigs. 2 FDR-adjusted p-value < 1 × 10−10; FDR-adjusted p-value < 1 × 10−5 = 1 × 10−5.
Log2(fold change) and False Discovery Rate-adjusted p-value (logFC and FDR, respectively) of genes in the prefrontal cortex that presented a significant (FDR < 0.05) main or interaction effect of sex (S) with morphine (M) and maternal immune activation (A) and represent the pathways enriched at FDR < 0.05 and a normalized enrichment score |NES| > 1.5.
| Gene | MxS 1 | AxS | ||
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| Symbol | LogFC | FDR | LogFC | FDR |
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| 2.0 | 5 × 10−3 | ||
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| −0.7 | 3 × 10−2 | ||
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| 1. 7 | 4 × 10−3 | ||
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| 1.6 | 2 × 10−3 | ||
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| 2.0 | 1 × 10−5 | ||
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| 1.7 | 1 × 10−5 | ||
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| −2.2 | 1 × 10−5 | ||
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| 1.4 | 1 × 10−5 | ||
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| 1.6 | 1 × 10−5 |
1 MxS = morphine-by-sex interaction effect; AxS = maternal immune activation (MIA)-by-sex interaction effect where LogFC > 0 (LogFC < 0) denotes gene over-expression (under-expression) in morphine-treated or MIA-exposed females relative to groups differing in sex, morphine treatment or MIA levels.
Figure 1Gene networks for the cell adhesion molecules pathway. Nodes = genes; edges = STRING database connections; node color = differential expression between groups characterized by opioid (M = morphine or S = saline) followed by MIA exposure (C = control or P = viral MIA) from red (under-expressed in the first vs. second group, to yellow, and green (over-expressed in the first versus second group. Networks: MC vs. SC = morphine-treated Control vs. saline-treated Control; MP vs. MC = morphine-treated MIA vs. morphine-treated Control; MC vs. SP = morphine-treated Control vs. saline-treated MIA; MP vs. SC = morphine-treated MIA vs. saline-treated Control; SP vs. SC = saline-treated MIA vs. saline-treated Control; and MP vs. SP = morphine-treated MIA vs. saline-treated MIA.
Figure 2Gene networks for the long-term depression pathway. Nodes = genes; edges = STRING database connections; node color = differential expression between groups characterized by opioid (M = morphine or S = saline) followed by MIA exposure (C = control or P = viral MIA) from red (under-expressed in the first vs. second group, to yellow, and green (over-expressed in the first versus second group. Networks: MC vs. -SC = morphine-treated Control vs. saline-treated Control; MP-MC = morphine-treated MIA vs. morphine-treated Control; MC vs. SP = morphine-treated Control vs. saline-treated MIA; MP vs. SC = morphine-treated MIA vs. saline-treated Control; SP vs. SC = saline-treated MIA vs. saline-treated Control; and MP vs. SP = morphine-treated MIA vs. saline-treated MIA.