| Literature DB >> 36009613 |
Xifeng Hu1,2, Zheng Chen1,2, Yu Li1,2, Zhen Ding1,2, Qinghua Zeng1,2, Tong Wan3, Huansheng Wu1,2.
Abstract
A number of disorders that harm pig production are linked to porcine circoviruses, including PCV2. PCV2 infection is a substantial contributor to porcine-circovirus-associated illnesses (PCAS) and the post-weaning multi-systemic wasting syndrome (PMWS), which have a significant negative economic impact on pig production. Additionally, PCV infection has been labeled as a global concern to cattle and wildlife. This study's objectives were to examine the prevalence of PCV1/2/3 in Jiangxi Province, China, and to clarify the epidemiological significance of wild boar in PCV epidemiology. The 2020 hunting seasons resulted in the collection of 138 wild boar samples for PCV1/2/3 detection, which was followed by the genetic clarification of PCV2 strains. According to our data, 21.7% (30/138) of the population had PCV1 positivity, 22.5% (31/138) had PCV2 positivity, and 5.8% (8/138) had PCV3 positivity. Additionally, 10 out of 138 wild boar samples had PCV1 and PCV2 co-infections, while 5 out of 138 wild boar samples had PCV2 and PC3 co-infections. Nineteen full-length PCV2 genomes measuring 1767 nt were recovered from various animal tissues using conventional PCR. Eighteen out of nineteen PCV2 strains were identified as PCV2b by phylogenetic tree analysis, which was completed by the reference strain HLJ2015 obtained from domestic pigs in 2015. Additionally, one genotype of PCV2d JX11-2020 (MW889021) shared a sub-branch with the referenced strain TJ (AY181946), which was isolated in domestic pigs in 2002. This finding raises the possibility that domestic pigs could contract PCV2 strains from wild boar, posing a serious threat to the Jiangxi province of China's pig production industry.Entities:
Keywords: PCV2; PCV3; PCVs; domestic pigs; genotype; wild boars
Year: 2022 PMID: 36009613 PMCID: PMC9404430 DOI: 10.3390/ani12162021
Source DB: PubMed Journal: Animals (Basel) ISSN: 2076-2615 Impact factor: 3.231
Figure 1Regions with collected wild boar samples are marked with black dots in Jiangxi province of China.
Total number of harvesting wild boar samples in Jiangxi province.
| Shangrao | JiAn | Yichun | Ganzhou | Nanchang | Total |
|---|---|---|---|---|---|
| 12 | 65 | 32 | 12 | 17 | 138 |
Primers and probes the TaqMan detection assay used in this study.
| Assays | Primers | Sequences (5′-3′) | Genes | Amplicons |
|---|---|---|---|---|
| Duplex real-time PCR | PCV1F | AACCCCATAAGAGGTGGGTGTT | ORF1 | 129 bp |
| PCV1R | TTCTACCCTCTTCCAAACCTTCCT | |||
| PCV1-P | VIC-TCCGAGGAGGAGAAAAACAA | |||
| PCV2F | CTGAGTCTTTTTTATCACTTCGTAATGGT | ORF1-ORF2 | 146 bp | |
| PCV2R | ACTGCGTTCGAAAACAGTATATACGA | |||
| PCV2-P | FAM-TTAAGTGGGGGGTCTTTAAGATTA | |||
| Real-time PCR | PCV3F | ACTGCGTTCGAAAACAGTATATACGA | ORF2 | 111 bp |
| PCV3R | CATAAATGCTCCAAAGCAGTGCT | |||
| PCV3-P | VIC-ATATGTGTTGAGCCATGGGGTGGG | |||
| Traditional | PCV2FF | TAATAAAAACCATTACGAAGTGATA | Full | 2000 bp |
| PCV2FR | GGTTTTTATTATTCATTAAGGGTTA |
The information of PCV2 strains obtained in this study.
| No. | Accession Number | Strains | Country | Year | Host | Length | Genotype | Organs |
|---|---|---|---|---|---|---|---|---|
| 1 | MW889012 | JX2-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 2 | MW889013 | JX3-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 3 | MW889014 | JX4-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | kidney |
| 4 | MW889015 | JX5-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 5 | MW889016 | JX6-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 6 | MW889017 | JX7-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | spleen |
| 7 | MW889018 | JX8-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 8 | MW889019 | JX9-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 9 | MW889020 | JX10-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 10 | MW889021 | JX11-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 11 | MW889022 | JX12-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 12 | MW889023 | JX13-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 13 | MW889024 | JX14-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 14 | MW889025 | JX15-2020 | China | 2020 | Wild boars | 1767 bp | PCV2d | lymph node |
| 15 | MW889026 | JX16-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 16 | MW889027 | JX17-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | lymph node |
| 17 | MW889028 | JX18-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | kidney |
| 18 | MW889029 | JX19-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | kidney |
| 19 | MW889030 | JX20-2020 | China | 2020 | Wild boars | 1767 bp | PCV2b | kidney |
Summary of PCVs detection in 138 wild boar samples.
| Porcine Circovirus Genotype | |||||
|---|---|---|---|---|---|
| PCV1 | PCV2 | PCV3 | PCV1 + PCV2 | PCV2 + PCV3 | |
| Positive ( | 30 | 31 | 8 | 10 | 5 |
| Total ( | 138 | 138 | 138 | 138 | 138 |
| Rate (%) | 21.73 | 22.46 | 5.79 | 7.25 | 3.62 |
Detection results of PCVs in different organs of wild boars.
| No. | Organ | 1 | 2 | 3 | No. | Organ | 1 | 2 | 3 | No. | Organ | 1 | 2 | 3 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | liver | − | − | − | 48 | lymph node | + | − | − | 94 | lung | + | − | − |
| 2 | kidney | − | + | + | 49 | kidney | − | + | − | 95 | kidney | − | − | − |
| 3 | spleen | − | + | − | 50 | lymph node | − | − | − | 96 | lung | − | − | − |
| 4 | brain | − | − | − | 51 | liver | − | − | − | 97 | kidney | − | − | − |
| 5 | lymph node | + | − | − | 52 | kidney | − | + | − | 98 | kidney | + | + | − |
| 6 | kidney | − | − | − | 53 | Liver | − | − | − | 99 | lung | − | − | − |
| 7 | kidney | − | − | − | 54 | lymph node | − | + | − | 100 | kidney | − | − | − |
| 8 | lung | + | − | − | 55 | kidney | − | − | − | 101 | brain | − | − | − |
| 9 | lung | − | − | − | 56 | liver | − | − | − | 102 | kidney | − | − | − |
| 10 | lung | + | − | − | 57 | liver | − | − | − | 103 | lung | + | − | − |
| 11 | spleen | − | − | − | 58 | brain | − | − | − | 104 | kidney | − | − | − |
| 12 | spleen | + | − | − | 59 | spleen | − | − | − | 105 | lymph node | + | − | − |
| 13 | spleen | − | − | − | 60 | lymph node | − | + | − | 106 | lung | − | − | − |
| 14 | kidney | − | − | − | 61 | spleen | − | − | − | 107 | lymph node | − | + | + |
| 15 | kidney | − | − | − | 62 | lymph node | + | + | − | 108 | lymph node | + | + | − |
| 17 | brain | − | − | − | 63 | spleen | − | − | − | 109 | lung | − | − | − |
| 18 | brain | − | − | − | 64 | kidney | − | − | − | 110 | lymph node | − | − | − |
| 19 | kidney | − | − | − | 65 | kidney | − | + | − | 111 | spleen | − | + | − |
| 20 | lymph node | − | + | − | 66 | brain | − | − | − | 112 | spleen node | − | − | − |
| 21 | lymph node | − | − | − | 67 | liver | − | − | − | 113 | lymph node | − | + | − |
| 22 | lymph node | − | − | − | 68 | lymph node | − | − | + | 114 | lymph node | − | − | − |
| 23 | kidney | + | − | − | 69 | lymph node | − | − | + | 115 | lung | − | − | − |
| 24 | kidney | − | − | − | 70 | liver | − | − | − | 116 | lymph node | + | − | − |
| 25 | spleen | − | − | − | 71 | kidney | − | − | − | 117 | spleen | − | − | − |
| 26 | brain | − | − | − | 72 | kidney | − | − | − | 118 | lung | − | − | − |
| 27 | spleen | + | − | − | 73 | lymph node | + | + | − | 119 | kidney | + | − | − |
| 28 | kidney | + | − | − | 74 | liver | − | − | − | 120 | spleen | + | − | − |
| 29 | spleen | − | − | − | 75 | kidney | − | − | + | 121 | liver | − | − | − |
| 30 | kidney | − | − | − | 76 | liver | − | − | − | 122 | brain | − | − | − |
| 31 | liver | − | − | − | 77 | lung | − | − | − | 123 | lymph node | − | + | − |
| 32 | liver | − | − | − | 78 | brain | − | − | − | 124 | liver | − | − | − |
| 33 | spleen | − | − | − | 79 | liver | − | − | − | 125 | lymph node | − | + | − |
| 34 | lymph node | + | − | − | 80 | kidney | − | − | − | 126 | liver | − | − | − |
| 35 | liver | − | − | − | 81 | kidney | + | − | − | 127 | liver | − | − | − |
| 36 | kidney | − | − | − | 82 | kidney | − | − | − | 128 | lymph node | − | + | − |
| 37 | lymph node | − | + | 83 | lymph node | + | + | − | 129 | liver | − | − | − | |
| 38 | lymph node | + | − | − | 84 | lung | − | − | − | 130 | spleen | − | − | − |
| 39 | kidney | − | − | − | 85 | lymph node | + | + | − | 131 | liver | − | − | − |
| 40 | lymph node | + | + | 86 | lung | − | − | − | 132 | spleen | − | + | − | |
| 41 | lymph node | + | − | − | 87 | lymph node | − | − | − | 133 | lymph node | − | − | − |
| 42 | kidney | − | − | − | 88 | lung | + | − | − | 134 | lymph node | − | + | + |
| 43 | lymph node | + | + | − | 89 | lymph node | + | + | − | 135 | liver | − | − | − |
| 44 | kidney | − | − | − | 90 | liver | − | − | − | 136 | spleen | − | − | − |
| 45 | lymph node | − | + | + | 91 | liver | − | − | − | 137 | kidney | − | + | − |
| 46 | kidney | − | − | − | 92 | kidney | − | + | + | 138 | liver | − | − | − |
| 47 | lymph node | + | + | − | 93 | lung | + | + | − |
1: PCV1; 2: PCV2; 3: PCV3.
Figure 2Partial PCV2 positive samples were used to amplify the complete genome of PCV2. The PCR products with about 2000 bp were separately by 1% agarose gel electrophoresis. M: DL2000 marker.
The information of 22 referenced PCV2 strains.
| No. | Accession Number | Strains | Genotype | Country | Year | Host |
|---|---|---|---|---|---|---|
| 1 | GU049340 | 1010-Stoon | PCV2a | Cannada | 2007 | wild boar |
| 2 | MH663459 | HBBD1501 | PCV2a | China | 2015 | domestic pig |
| 3 | MK347400 | SD384F16 | PCV2a | China | 2016 | domestic pig |
| 4 | HQ713495 | 5-55004-7 | PCV2b | USA | 2005 | domestic pig |
| 5 | MK347394 | HLJ120215 | PCV2b | China | 2015 | domestic pig |
| 6 | EU148504 | DK1987PMWSfree | PCV2c | Denmark | 2007 | domestic pig |
| 7 | EF524517 | GS04 | PCV2d | China | 2007 | wild boar |
| 8 | AY181946 | TJ | PCV2d | China | 2002 | domestic pig |
| 9 | KT795287 | MEX-41238-2014 | PCV2e | Mexico | 2014 | wild boar |
| 10 | KT795290 | USA-45358-2015 | PCV2e | USA | 2015 | wild boar |
Figure 3Phylogenetic tree based on the complete genome of all sequences (19 PCV2 sequences amplified in this study and 10 PCV2 reference sequences). The sequences obtained in this study were marked with black triangle. Phylogenetic tree was conducted by using the p-distance-based neighbor-joining (NJ) method with bootstrap analysis of 1000 replicates in MEGA 7.0 software.
Figure 4Phylogenetic tree based on the ORF2 amino acids of 19 PCV2 sequences amplified in this study and 10 PCV2 reference sequences). The sequences obtained in this study have been marked with a black square. The phylogenetic tree was performed using the p-distance-based neighbor joining (NJ) method with bootstrap analysis of 1000 replicates in MEGA 7.0 software.