| Literature DB >> 36006926 |
Abstract
The key to overcoming COVID-19 lies, arguably, in the diffusion process of confirmed cases. In view of this, this study has two main aims: first, to investigate the unique characteristics of COVID-19-for the existence of asymptomatic cases-and second, to determine the best strategy to suppress the diffusion of COVID-19. To this end, this study proposes a new compartmental model-the SICUR model-which can address undetected asymptomatic cases and considers the three main drivers of the diffusion of COVID-19: the degree of social distancing, the speed of testing, and the detection rate of infected cases. Taking each country's situation into account, it is suggested that susceptible cases can be classified into two categories based on their sources of occurrence: internal and external factors. The results show that the ratio of undetected asymptomatic cases to infected cases will, ceteris paribus, be 6.9% for South Korea and 22.4% for the United States. This study also quantitatively shows that to impede the diffusion of COVID-19: firstly, strong social distancing is necessary when the detection rate is high, and secondly, fast testing is effective when the detection rate is low.Entities:
Mesh:
Year: 2022 PMID: 36006926 PMCID: PMC9409553 DOI: 10.1371/journal.pone.0273469
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.752
Description of SIR type models for COVID-19.
| Authors | Data set | Feature | |||||
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| Countries | Observation period | Social distancing | Detection rate | Speed of Testing | Multi-waves | External wave | |
| Choi and Ki (2020) [ | Daegu, North Gyeongsang Province in South Korea | January 20, 2020 ~ March 4, 2020 |
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| Gounane et al. (2021) [ | Germany, Spain, Italy, France, Algeria, Morocco | January 20, 2020 ~ July 14, 2020 |
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| Cho and Kim (2021) [ | South Korea | January 20, 2020 ~ October 20, 2020 |
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| Anastassopoulou et al. (2020) [ | Hubei in China | January 11, 2020 ~ February 10, 2020 |
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| Chen et al. (2020) [ | USA, UK, France, Iran, Spain, Italy, Germany, South Korea | January 15, 2020 ~ March 2, 2020 |
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| Samui et al. (2020) [ | India | January 30, 2020 ~ April 30, 2020 |
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| Ndairou et al. (2020) [ | Wuhan in China | January 4, 2020 ~ March 9, 2020 |
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| Overton et al. (2020) [ | Wuhan in China | December 1, 2019 ~ February 9, 2020 |
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| Khan et al. (2020) [ | 8 states in the USA | January 22, 2020 ~ June 29, 2020 |
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| Tsay et al. (2020) [ | USA | January 22, 2020 ~ April 16, 2020 |
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| Cooper et al. (2020) [ | China, South Korea, India, Australia, USA, Italy, Texas in the USA | January, 2020 ~ June, 2020 |
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| Gustavo et al. (2021) [ | Italy, Spain, USA | March 20, 2020 ~ November 15, 2020 |
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| Shin (2021) [ | South Korea | February 18, 2020 ~ February 8, 2021 |
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| Perakis et al. (2022) [ | All states in the USA | April 12, 2020 ~ February 15, 2021 |
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| Gaeta (2020) [ | (Northern) Italy | February 21, 2020 ~ May 15, 2020 |
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| Lee et al. (2021) [ | South Korea | January 20, 2020 ~ April 2, 2020 |
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| Ramos et al. (2021) [ | Italy | January 19, 2020 ~ July 21, 2020 |
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| AlQadi and Bani-Yaghomb (2022) [ | 6 cities and states in the USA | March 10, 2020 ~ March 7, 2021 |
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| Proposed Model | South Korea, USA | January 20, 2020 ~ December 31, 2020 |
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Fig 1Structure map of the SICUR model.
Notations.
| Notation | Description | Formula |
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| The cumulative number of infected cases from the | ||
| The point-wise number of infected cases from the |
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| The cumulative number of infected cases from the rapid global diffusion of COVID-19 at time | ||
| The point-wise number of infected cases from the rapid global diffusion of COVID-19 at time |
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| The default epidemic size of susceptible cases from the | |
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| The default epidemic size of susceptible cases from the rapid global diffusion of COVID-19; the upper bound of | |
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| The multiplier for shifting the epidemic size at time | |
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| The epidemic size of susceptible cases from the | |
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| The epidemic size of susceptible cases from the rapid global diffusion of COVID-19 at time | |
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| The epidemic size of total susceptible cases of COVID-19, equal to or smaller than the national population |
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| The cumulative number of confirmed cases from the | ||
| The point-wise number of confirmed cases from the |
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| The cumulative number of confirmed cases from the rapid global diffusion of COVID-19 at time | ||
| The point-wise number of confirmed cases from the rapid global diffusion of COVID-19 at time |
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| The cumulative number of confirmed cases at time | ||
| The point-wise number of confirmed cases at time |
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| The cumulative removed number of undetected asymptomatic cases from the | ||
| The point-wise removed number of undetected asymptomatic cases from the |
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| The cumulative removed number of undetected asymptomatic cases from the rapid global diffusion of COVID-19 at time | ||
| The point-wise removed number of undetected asymptomatic cases from the rapid global diffusion of COVID-19 at time |
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| The default rate of infection from the | |
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| The default rate of infection from the rapid global diffusion of COVID-19 | |
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| The multiplier for shifting the rate of infection at time | |
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| The rate of infection from the | |
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| The rate of infection from the rapid global diffusion of COVID-19 at time | |
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| The detection rate of infected cases from the | |
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| The detection rate of infected cases from the rapid global diffusion of COVID-19 | |
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| The detection rate of infected cases | |
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| The number of infected cases when the first confirmed case is detected | |
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| The median of the virus shedding duration | |
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| The shape parameter of the candidate for the distribution of the duration | |
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| The scale parameter of the candidate for the distribution of the duration | |
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| The duration of virus shedding between the time to be infected and the time to be resolved | |
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| The removal rate for undetected asymptomatic cases from the | |
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| The removal rate for undetected asymptomatic cases from the rapid global diffusion of COVID-19 |
Fig 2Three kinds of connected graphs (the number of nodes = 7 / the sum of degrees = 12) are based on the heterogeneity of networks.
The example network with—(a) high heterogeneity. (b) intermediate heterogeneity. (c) low heterogeneity. The number of links for each node in—(d) the network A. (e) the network B. (f) the network C. The plot (x-axis = the number of links r / the y-axis = the number of nodes with r links) for—(g) the network A. (h) the network B. (i) the network C. There are three kinds of graphs based on the heterogeneity of the networks. If the detection of infected cases connected with detected cases is possible, all susceptible nodes (individuals) in the example network A (on the left side) can be detected for three periods at most. For example, node 2 is detected in period 1. Then, node 1, connected with node 2, can be detected in period 2. Since node 1 is connected with all the other nodes, all the left nodes can finally be detected in period 3. If the first detected node is node 1, all the susceptible nodes can be detected within two periods. However, all susceptible nodes in the example network C (on the right side) can be detected for at least four periods. For example, node 4 is detected in period 1, fortunately. Then, the nodes connected with node 4 (nodes 3 and 5) can be detected in period 2. Similarly, nodes 2 and 6 can be detected in period 3. Finally, nodes 1 and 7 can be detected in period 4. If the first detected node is not node 4, the number of periods required to detect all susceptible cases is more than five.
Fig 3Estimated numbers of confirmed cases in South Korea with the partition based on the sources of occurrence.
(a) The point-wise number of actual confirmed cases (blue vertical line) and the point-wise number of estimated confirmed cases (red solid line). (b) The point-wise number of estimated confirmed cases from the first wave (orange vertical line), the point-wise number of estimated confirmed cases from the rapid global diffusion (green vertical line), the point-wise number of estimated confirmed cases from the second wave (violet vertical line), and the point-wise number of estimated confirmed cases from the third wave (azure vertical line). (c) The cumulative number of actual confirmed cases (blue vertical line) and the cumulative number of estimated confirmed cases (red solid line). (d) The cumulative number of estimated confirmed cases from the first wave (orange vertical line), the cumulative number of estimated confirmed cases from the rapid global diffusion (green vertical line), the cumulative number of estimated confirmed cases from the second wave (violet vertical line), and the cumulative number of estimated confirmed cases from the third wave (azure vertical line).
Comparison of model fit and parameter estimates for confirmed cases in South Korea.
| South Korea | Lognormal | Gamma | Weibull | ||||||
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| Estimate | Std err | p-value | Estimate | Std err | p-value | Estimate | Std err | p-value | |
| c | 0.0006 | 0.0003 | 0.0656 | 0.0005 | 0.0003 | 0.0659 | 0.0005 | 0.0003 | 0.0627 |
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| 8,518 | 234 | < .0001 | 8,489 | 228 | < .0001 | 8,482 | 226 | < .0001 |
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| 3,492 | 68 | < .0001 | 3,504 | 69 | < .0001 | 3,507 | 69 | < .0001 |
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| 102,528 | 3717 | < .0001 | 102,994 | 3763 | < .0001 | 103,102 | 3772 | < .0001 |
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| 2,491 | 46 | < .0001 | 2,489 | 46 | < .0001 | 2,489 | 46 | < .0001 |
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| 1.1181 | 0.0170 | < .0001 | 1.1170 | 0.0167 | < .0001 | 1.1167 | 0.0166 | < .0001 |
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| 0.6572 | 0.0260 | < .0001 | 0.6672 | 0.0258 | < .0001 | 0.6698 | 0.0251 | < .0001 |
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| 0.1887 | 0.0370 | < .0001 | 0.1934 | 0.0380 | < .0001 | 0.1946 | 0.0381 | < .0001 |
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| 0.1031 | 0.0035 | < .0001 | 0.1044 | 0.0038 | < .0001 | 0.1048 | 0.0038 | < .0001 |
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| 0.5260 | 0.0393 | < .0001 | 0.5172 | 0.0384 | < .0001 | 0.5149 | 0.0379 | < .0001 |
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| 1.3085 | 0.0149 | < .0001 | 1.3049 | 0.0152 | < .0001 | 1.3040 | 0.0152 | < .0001 |
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| 1.0321 | 0.0611 | < .0001 | 1.0352 | 0.0602 | < .0001 | 1.0360 | 0.0598 | < .0001 |
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| 1.5366 | 0.0984 | < .0001 | 1.5327 | 0.0969 | < .0001 | 1.5318 | 0.0964 | < .0001 |
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| 0.9602 | 0.0305 | < .0001 | 0.9624 | 0.0300 | < .0001 | 0.9630 | 0.0298 | < .0001 |
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| 0.9725 | 0.0404 | < .0001 | 0.9719 | 0.0390 | < .0001 | 0.9716 | 0.0385 | < .0001 |
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| 0.9180 | 0.0067 | < .0001 | 0.9191 | 0.0067 | < .0001 | 0.9193 | 0.0067 | < .0001 |
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| 1.0000 | 0.0000 | . | 1.0000 | 0.0000 | . | 1.0000 | 0.0000 | . |
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| 0.9755 | 0.0000 | . | 0.9755 | 0.0000 | . | 0.9755 | 0.0000 | . |
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| 2.6863 | 0.3444 | < .0001 | 1.3231 | 0.1231 | < .0001 | 1.2255 | 0.0769 | < .0001 |
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| 1.3671 | 0.1585 | < .0001 | 7.7513 | 1.5702 | < .0001 | 9.9804 | 1.2730 | < .0001 |
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| 5.665 | 5.628 | 5.616 | ||||||
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| 130,852 | 131,216 | 131,297 | ||||||
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| 0.9245 | 0.9255 | 0.9257 | ||||||
| SSE | 1,527,224 | 1,528,709 | 1,529,460 | ||||||
aA1,1 is restricted by the boundary condition (0 ≤ A1,1 ≤ 1).
b λ = λ1, (or λ2) such that .
c I is the estimated median incubation period of COVID-19 (days).
dA is the weighted mean of A1,1, A1,2, A1,3, and A2.
eSSE is the sum of squared error, and the adjusted R-squared values are 1.0000.
Fig 4Estimated numbers of confirmed cases in the United States with the partition based on the sources of occurrence.
(a) The point-wise number of actual confirmed cases (blue vertical line) and the point-wise number of estimated confirmed cases (red solid line). (b) The point-wise number of estimated confirmed cases from the first wave (orange vertical line), and the point-wise number of estimated confirmed cases from the rapid global diffusion (green vertical line). (c) The cumulative number of actual confirmed cases (blue vertical line) and the cumulative number of estimated confirmed cases (red solid line). (d) The cumulative number of estimated confirmed cases from the first wave (orange vertical line), and the cumulative number of estimated confirmed cases from the rapid global diffusion (green vertical line).
Comparison of model fit and parameter estimates for confirmed cases in the United States.
| USA | Lognormal | Gamma | Weibull | ||||||
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| Estimate | Std err | p-value | Estimate | Std err | p-value | Estimate | Std err | p-value | |
| c | 861,104 | 264,895 | 0.0013 | 702,643 | 187,043 | 0.0002 | 702,504 | 187,009 | 0.0002 |
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| 1,462,682 | 889,515 | 0.101 | 1,363,060 | 964,539 | 0.1585 | 1,362,692 | 964,221 | 0.1585 |
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| 2.23E+7 | 3.35E+6 | < .0001 | 1.94E+7 | 3.06E+6 | < .0001 | 1.94E+7 | 3.06E+6 | < .0001 |
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| 0.5993 | 0.1698 | 0.0005 | 0.7005 | 0.2190 | 0.0015 | 0.7005 | 0.2190 | 0.0015 |
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| 22.9763 | 5.0906 | < .0001 | 22.5275 | 5.8150 | 0.0001 | 22.5284 | 5.8144 | 0.0001 |
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| 0.3221 | 0.0431 | < .0001 | 0.3306 | 0.0542 | < .0001 | 0.3306 | 0.0542 | < .0001 |
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| 0.0268 | 0.0081 | 0.0011 | 0.0305 | 0.0102 | 0.0031 | 0.0305 | 0.0102 | 0.0031 |
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| 0.0548 | 0.0177 | 0.0021 | 0.0565 | 0.0221 | 0.011 | 0.0565 | 0.0221 | 0.011 |
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| 2.8447 | 0.4080 | < .0001 | 2.5806 | 0.2961 | < .0001 | 2.5804 | 0.2961 | < .0001 |
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| 0.3571 | 0.0655 | < .0001 | 0.3694 | 0.0719 | < .0001 | 0.3694 | 0.0719 | < .0001 |
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| 1.1479 | 0.0272 | < .0001 | 1.1675 | 0.0282 | < .0001 | 1.1676 | 0.0282 | < .0001 |
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| 0.0000 | 0.0000 | . | 0.0000 | 0.0000 | . | 0.0000 | 0.0000 | . |
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| 0.8298 | 0.0833 | < .0001 | 0.8305 | 0.0907 | < .0001 | 0.8306 | 0.0907 | < .0001 |
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| 0.9755 | 0.0000 | . | 0.9755 | 0.0000 | . | 0.9755 | 0.0000 | . |
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| 151.0247 | 95221.3 | 0.9987 | 1.5809 | 0.3483 | < .0001 | 1.5806 | 0.3482 | < .0001 |
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| 8.8992 | 2834.9 | 0.9975 | 8.27E+69 | 8.20E-84 | < .0001 | 8.27E+69 | 4.77E-84 | < .0001 |
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| 9.6879 | 9.0304 | 9.0297 | ||||||
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| 106,297,276 | 108,280,631 | 108,272,647 | ||||||
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| 0.7787 | 0.7760 | 0.7760 | ||||||
| SSE | 6.040E+11 | 6.577E+11 | 6.577E+11 | ||||||
aA1,1 and A2 are restricted by the boundary condition (0 ≤ A1,1, A2 ≤ 1).
bλ = λ1, (or λ2) such that .
cA is the weighted mean of A1,1 and A2.
dSSE is the sum of squared error, and the adjusted R-squared values are 0.9999.
Fig 5Estimated numbers of confirmed cases in South Korea with/without the shift of q.
(a) The point-wise number of actual confirmed cases (blue vertical line), the point-wise number of estimated confirmed cases (red solid line), and the point-wise number of estimated confirmed cases without the shift of the degree of social distancing on October 12 (orange solid line). (b) The cumulative number of actual confirmed cases (blue vertical line), the cumulative number of estimated confirmed cases (red solid line), and the cumulative number of estimated confirmed cases without the shift of the degree of social distancing on October 12 (orange solid line).
Demonstration of the effects of social distancing.
| Scenarios (1 / 2 / 3) | |||||||
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| 11 | 17 | 20 | 876 | 447 | 178 | ||
| 14 | 20 | 25 | 912 | 551 | 223 | ||
| 15 | 21 | 28 | 981 | 638 | 270 | ||
| 12 | 20 | 32 | 739 | 443 | 206 | ||
| 14 | 21 | 33 | 769 | 514 | 247 | ||
| 16 | 22 | 33 | 827 | 574 | 283 | ||
| 12 | 21 | 38 | 586 | 417 | 248 | ||
| 15 | 22 | 37 | 620 | 463 | 273 | ||
| 16 | 23 | 37 | 675 | 503 | 295 | ||
| Default | 0 | 45 | |||||
at is the time to peak of the fourth wave of COVID-19.
Fig 6Demonstration of the effects of social distancing.
The confirmed cases without a new wave (default; blue solid line), the confirmed cases with q = 0.4 (red solid line), the confirmed cases with q = 0.2 (green solid line), and the confirmed cases with q = 0.1 (violet solid line). (a) A = 1.0, I = 3.7. (b) A = 1.0, I = 5.6. (c) A = 1.0, I = 7.5. (d) A = 0.75, I = 3.7. (e) A = 0.75, I = 5.6. (f) A = 0.75, I = 7.5. (g) A = 0.5, I = 3.7. (h) A = 0.5, I = 5.6. (i) A = 0.5, I = 7.5.
Demonstration of the effects of detection rate.
| Scenarios (1 / 2 / 3) | |||||||
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| 11 | 12 | 12 | 876 | 739 | 586 | ||
| 14 | 14 | 15 | 912 | 769 | 620 | ||
| 15 | 16 | 16 | 981 | 827 | 675 | ||
| 17 | 20 | 21 | 447 | 443 | 417 | ||
| 20 | 21 | 22 | 551 | 514 | 463 | ||
| 21 | 22 | 23 | 638 | 574 | 503 | ||
| 20 | 32 | 38 | 178 | 206 | 248 | ||
| 25 | 33 | 37 | 223 | 247 | 273 | ||
| 28 | 33 | 37 | 270 | 283 | 295 | ||
| Default | 0 | 45 | |||||
Fig 7Demonstration of the effects of detection rate.
The confirmed cases without a new wave (blue solid line), the confirmed cases with A = 1.0 (red solid line), the confirmed cases with A = 0.75 (green solid line), and the confirmed cases with A = 0.5 (violet solid line). (a) q = 0.4, I = 3.7. (b) q = 0.4, I = 5.6. (c) q = 0.4, I = 7.5. (d) q = 0.2, I = 3.7. (e) q = 0.2, I = 5.6. (f) q = 0.2, I = 7.5. (g) q = 0.1, I = 3.7. (h) q = 0.1, I = 5.6. (i) q = 0.1, I = 7.5.
Demonstration of the effects of the speed of testing.
| Scenarios (1 / 2 / 3) | |||||||
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| 11 | 14 | 15 | 876 | 912 | 981 | ||
| 12 | 14 | 16 | 739 | 769 | 827 | ||
| 12 | 15 | 16 | 586 | 620 | 675 | ||
| 17 | 20 | 21 | 447 | 551 | 638 | ||
| 20 | 21 | 22 | 443 | 514 | 574 | ||
| 21 | 22 | 23 | 417 | 463 | 503 | ||
| 20 | 25 | 28 | 178 | 223 | 270 | ||
| 32 | 33 | 33 | 206 | 247 | 283 | ||
| 38 | 37 | 37 | 248 | 273 | 295 | ||
| Default | 0 | 45 | |||||
Fig 8Demonstration of the effects of the speed of testing.
The confirmed cases without a new wave (blue solid line), the confirmed cases with I = 3.7 (red solid line), the confirmed cases with I = 5.6 (green solid line), and the confirmed cases with I = 7.5 (violet solid line). (a) q = 0.4, A = 1.0. (b) q = 0.4, A = 0.75. (c) q = 0.4, A = 0.5. (d) q = 0.2, A = 1.0. (e) q = 0.2, A = 0.75. (f) q = 0.2, A = 0.5. (g) q = 0.1, A = 1.0. (h) q = 0.1, A = 0.75. (i) q = 0.1, A = 0.5.