| Literature DB >> 35992873 |
Namsoo Kim1, Yoo-Na Kim2, Kyunglim Lee2, Eunhyang Park3, Yong Jae Lee2, So Yoon Hwang4, Jihyang Park4, Zisun Choi4, Sang Wun Kim2, Sunghoon Kim2, Jong Rak Choi1,4, Seung-Tae Lee1,4, Jung-Yun Lee2.
Abstract
Purpose: Cervical smear samples are easily obtainable and may effectively reflect the tumor microenvironment in gynecological cancers. Therefore, we investigated the feasibility of genomic profiling based on tumor DNA analysis from cervical smear samples from endometrial cancer patients. Materials and methods: Preoperative cervical smear samples were obtained via vaginal sampling in 50 patients, including 39 with endometrial cancer and 11 with benign uterine disease. Matched blood samples were obtained simultaneously. Genomic DNA (gDNA) from cervical smear and/or cell-free DNA from whole blood were extracted and sequenced using the Pan100 panel covering 100 endometrial cancer-related genes.Entities:
Keywords: Papanicolaou (PAP) smear; circulating tumor DNA (ctDNA); endometrial cancer; immunohistochemistry; molecular classification and biomarkers
Year: 2022 PMID: 35992873 PMCID: PMC9389008 DOI: 10.3389/fonc.2022.942735
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Graphical summary of the analysis flow: the collection of genomic DNA (gDNA) based on cervical swab and circulating tumor DNA (ctDNA) based on whole blood sampling, followed by genomic profiling with Pan100 panel.
Distribution of clinical variables among patients with endometrial cancer.
| Variables | All patients (n=50) |
|---|---|
| Age, year (mean ± SD) | 55.7 ± 12.2 |
| Clinical Stage (n, %) | |
| IA | 20 (40%) |
|
| |
| Histology, n (%) | |
| Endometrioid G1 | 10 (26%) |
| Tumour size, cm (median, range) | 2.5 (0–14) |
| Myometrial invasion depth | |
| Minimal | 9 (23%) |
| Lymph node metastasis | |
| No | 43 (86%) |
| Immunohistochemistry, n (%) | |
| MMRd (loss of protein expression) | 9 (out of 29, 31%) |
SD standard deviation, MMRd mismatch repair deficiency.
Performance of cervical swab-based genomic DNA (gDNA) for predicting endometrial cancer versus benign uterine disease.
| Reference | |||
|---|---|---|---|
| No cancer | Cancer | ||
| Prediction by cervical swab-based gDNA | Negative | 11 | 13 |
| Positive | 0 | 26 | |
| Accuracy: 0.74 (95% CI 0.60 – 0.85) | |||
| Sensitivity: 0.67 | |||
| Specificity: 1.00 | |||
| Positive predictive value: 1.00 | |||
| Negative predictive value: 0.46 | |||
Comparison of clinicopathological factors between patients who are detected verses those who are not detected by cervical swab-based genomic DNA (gDNA) among patients with endometrial cancer.
| Cervical swab-based gDNA detection | |||
|---|---|---|---|
| Negative (n=13) | Positive (n=26) |
| |
| Age, year (mean ± SD) | 57.9 ± 10.3 | 57.4 ± 11.7 | 0.8844 |
| Histology risk | 0.4472 | ||
| Low (Endometrioid G1) | 9 (69%) | 21 (81%) | |
| Tumour size, cm (median, range) | 1.5 (0–3.8) | 3.3 (0.4–14) | <0.0001 |
| Myometrial invasion | 0.0025 | ||
| Minimal | 7 (54%) | 2 (8%) | |
| Clinical stage | 0.03203 | ||
| IA | 11 (84%) | 9 (35%) | |
Performance of cervical swab-based genomic DNA (gDNA) for detection among endometrial cancer patients. .
| Reference* | |||
|---|---|---|---|
| Not detect by any test modality | Detect by any test modality | ||
| Prediction by cervical swab-based gDNA | Negative | 11 | 2 |
| Positive | 0 | 26 | |
| Accuracy: 0.95 (95% CI 0.8268 – 0.9937) | |||
| Sensitivity: 0.93 | |||
| Specificity: 1.00 | |||
| Positive predictive value: 1.00 | |||
| Negative predictive value: 0.85 | |||
*Reference based on detection by any of the two modalities (cervical swab-based gDNA or whole blood-based circulating tumor DNA).
Figure 2Analysis of matched sample in endometrial cancer patients. (A) Comparison between cervical swab-based genomic DNA (gDNA) versus whole blood-based circulating tumor DNA (ctDNA). (B) Comparison between cervical swab-based gDNA versus conventional Pap smear.
Figure 3Genomic analysis of pathogenic mutations. (A) Landscape of somatic alterations and (B) Somatic interaction plot based on cervical swab-based gDNA from 26 patients.
Figure 4Application of the Proactive Molecular Risk Classifier for Endometrial Cancer (ProMisE) based on cervical swab-based genomic DNA.