Literature DB >> 35991528

Regularized regression on compositional trees with application to MRI analysis.

Bingkai Wang1, Brian S Caffo1, Xi Luo2, Chin-Fu Liu3, Andreia V Faria4, Michael I Miller3, Yi Zhao5.   

Abstract

A compositional tree refers to a tree structure on a set of random variables where each random variable is a node and composition occurs at each non-leaf node of the tree. As a generalization of compositional data, compositional trees handle more complex relationships among random variables and appear in many disciplines, such as brain imaging, genomics and finance. We consider the problem of sparse regression on data that are associated with a compositional tree and propose a transformation-free tree-based regularized regression method for component selection. The regularization penalty is designed based on the tree structure and encourages a sparse tree representation. We prove that our proposed estimator for regression coefficients is both consistent and model selection consistent. In the simulation study, our method shows higher accuracy than competing methods under different scenarios. By analyzing a brain imaging data set from studies of Alzheimer's disease, our method identifies meaningful associations between memory decline and volume of brain regions that are consistent with current understanding.

Entities:  

Keywords:  composition; hierarchical tree; regularized regression

Year:  2022        PMID: 35991528      PMCID: PMC9387759          DOI: 10.1111/rssc.12545

Source DB:  PubMed          Journal:  J R Stat Soc Ser C Appl Stat        ISSN: 0035-9254            Impact factor:   1.680


  14 in total

1.  Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs.

Authors:  Ali Shojaie; George Michailidis
Journal:  Biometrika       Date:  2010-07-09       Impact factor: 2.445

2.  Applying compositional data methodology to nutritional epidemiology.

Authors:  Maria Léa Corrêa Leite
Journal:  Stat Methods Med Res       Date:  2014-11-19       Impact factor: 3.021

3.  Amygdala atrophy is prominent in early Alzheimer's disease and relates to symptom severity.

Authors:  Stéphane P Poulin; Rebecca Dautoff; John C Morris; Lisa Feldman Barrett; Bradford C Dickerson
Journal:  Psychiatry Res       Date:  2011-09-14       Impact factor: 3.222

4.  Occipital atrophy is associated with visual hallucinations in Alzheimer's disease.

Authors:  S Holroyd; M L Shepherd; J H Downs
Journal:  J Neuropsychiatry Clin Neurosci       Date:  2000       Impact factor: 2.198

5.  Using deep Siamese neural networks for detection of brain asymmetries associated with Alzheimer's Disease and Mild Cognitive Impairment.

Authors:  Chin-Fu Liu; Shreyas Padhy; Sandhya Ramachandran; Victor X Wang; Andrew Efimov; Alonso Bernal; Linyuan Shi; Marc Vaillant; J Tilak Ratnanather; Andreia V Faria; Brian Caffo; Marilyn Albert; Michael I Miller
Journal:  Magn Reson Imaging       Date:  2019-07-15       Impact factor: 2.546

6.  MULTIVARIATE FRACTIONAL REGRESSION ESTIMATION OF ECONOMETRIC SHARE MODELS.

Authors:  John Mullahy
Journal:  J Econom Method       Date:  2014-03-22

Review 7.  Brain atrophy in Alzheimer's Disease and aging.

Authors:  Lorenzo Pini; Michela Pievani; Martina Bocchetta; Daniele Altomare; Paolo Bosco; Enrica Cavedo; Samantha Galluzzi; Moira Marizzoni; Giovanni B Frisoni
Journal:  Ageing Res Rev       Date:  2016-01-28       Impact factor: 10.895

8.  Bayesian Parameter Estimation and Segmentation in the Multi-Atlas Random Orbit Model.

Authors:  Xiaoying Tang; Kenichi Oishi; Andreia V Faria; Argye E Hillis; Marilyn S Albert; Susumu Mori; Michael I Miller
Journal:  PLoS One       Date:  2013-06-18       Impact factor: 3.240

9.  A transformation-free linear regression for compositional outcomes and predictors.

Authors:  Jacob Fiksel; Scott Zeger; Abhirup Datta
Journal:  Biometrics       Date:  2021-05-04       Impact factor: 1.701

10.  The minimal preprocessing pipelines for the Human Connectome Project.

Authors:  Matthew F Glasser; Stamatios N Sotiropoulos; J Anthony Wilson; Timothy S Coalson; Bruce Fischl; Jesper L Andersson; Junqian Xu; Saad Jbabdi; Matthew Webster; Jonathan R Polimeni; David C Van Essen; Mark Jenkinson
Journal:  Neuroimage       Date:  2013-05-11       Impact factor: 6.556

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