| Literature DB >> 35990842 |
Li Xiong1, Junfeng Cao1, Yixin Qiu1, Yinyin Fu1, Siyi Chen1, Mengjia He1, Shengyan Chen1, Wei Xie1, Xingyu Yang1, Chaochao Wang1, Mei Wu1, Hengxiang Xu1, Yijun Chen1, Xiao Zhang2.
Abstract
Purpose: The research aims to investigate the mechanism of action of aspirin in the treatment of Kawasaki disease.Entities:
Year: 2022 PMID: 35990842 PMCID: PMC9391120 DOI: 10.1155/2022/9828518
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.650
Figure 1Intersection targets network and the cross-target heat map.
Figure 2Protein-protein interaction (PPI) network. (a) PPI network of protein target (confidence >0.40), (b) PPI network of core protein target (confidence >0.97).
Figure 3Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of related genes. (a) The top 9 terms in biological processes (BP) are greatly enriched. (b) The subnetwork displays the top 5 BP terms and related genes. (c) The top 9 terms in molecular function (CC) are greatly enriched. (d) The subnetwork displays the top 5 CC terms and related genes. (e) The top 9 terms in cellular components (MF) are greatly enriched. (f) The subnetwork displays the top 5 MF terms and related genes. (g) The top 15 KEGG pathways. (h) The subnetwork shows top 10 KEGG pathways and related.
Figure 4Disease-core gene target-drug network. Triangular nodes represent signaling pathways, circular nodes represent target genes, diamond nodes represent drugs, and octagonal nodes represent gene ontology (GO) of related genes.
Molecular docking of aspirin and protein receptor.
| Binding energy (kcal) (mol) | Ligand efficiency | Inhib constant | |
|---|---|---|---|
| ELANE | −6.23 | −0.48 | 27.15 |
| NFKBIA | −5.62 | −0.43 | 75.76 |
| IKBKB | −5.05 | −0.39 | 198.29 |
| KDR | −5.25 | −0.4 | 141.49 |
| IL2 | −4.44 | −0.34 | 560.86 |
| CASP3 | −5.59 | −0.43 | 79.72 |
| FGF1 | −5.81 | −0.54 | 7.65 |
| CTSG | −7.17 | −0.55 | 5.55 |
Figure 5Molecular docking of active ingredients and hub targets. (a) Aspirin/CTSG, (b) Aspirin/FGF1, (c) Aspirin/ELANE.
Figure 6Variation of complex root mean square deviation (RMSD) difference over time during molecular dynamics simulations. (a) Aspirin/CTSG, (b) Aspirin/FGF1, (c) Aspirin/ELANE.
Binding free energies and energy components predicted by MM/GBSA (kcal/mol).
| Van der Waals energy | Electrostatic energy | Polar solvation energy | SASA energy | Binding free energy | |
|---|---|---|---|---|---|
| Aspirin/CTSG | −74.748 ± 0.674 | −26.904 ± 0.842 | 67.562 ± 1.162 | −9.342 ± 0.082 | −43.443 ± 0.669 |
| Aspirin/FGF1 | −0.348 ± 0.106 | −0.450 ± 0.357 | 9.916 ± 3.765 | 0.105 ± 0.097 | 9.287 ± 3.695 |
| Aspirin/ELANE | −88.467 ± 1.413 | −72.871 ± 1.961 | 87.512 ± 1.769 | −9.898 ± 0.156 | −83.601 ± 1.616 |
Figure 7The analysis of RMSF, SASA and Rg. (a) Aspirin/CTSG, (b) Aspirin/FGF1, (c) Aspirin/ELANE.