| Literature DB >> 35990487 |
Nadia Arif1, Zahid Shafiq1,2, Khalid Mahmood1, Muhammad Rafiq1, Sadia Naz3, Sohail Anjum Shahzad3, Umar Farooq3, Ali H Bahkali4, Abdallah M Elgorban4, Muhammad Yaqub1, Ahmed El-Gokha2,5.
Abstract
The search for novel heterocyclic compounds with a natural product skeleton as potent enzyme inhibitors against clinical hits is our prime concern in this study. Here, a simple and facile two-step strategy has been designed to synthesize a series of novel coumarin-based dihydropyranochromenes (12a-12m) in a basic moiety. The synthesized compounds were thus characterized through spectroscopic techniques and screened for inhibition potency against the cytosolic hCA II isoform and β-glucuronidase. Few of these compounds were potent inhibitors of hCA II and β-glucuronidase with varying IC50 values ranging from 4.55 ± 0.22 to 21.77 ± 3.32 μM and 440.1 ± 1.17 to 971.3 ± 0.05 μM, respectively. Among the stream of synthesized compounds, 12e and 12i were the most potent inhibitors of β-glucuronidase, while 12h, 12i, and 12j showed greater potency against hCA II. In silico docking studies illustrated the significance of substituted groups on the pyranochromene skeleton and binding pattern of these highly potent compounds inside enzyme pockets.Entities:
Year: 2022 PMID: 35990487 PMCID: PMC9386806 DOI: 10.1021/acsomega.2c03528
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1Selected hCA II/β-glucuronidase inhibitors and current work.
Scheme 1Synthesis of Coumarin-Based 4H,5H-Pyrano[3,2-c]chromenes (12a–12m)
Coumarin-Based 4H,5H-Pyrano[3,2-c]chromenes (12a–12m)
| compound no. | R1 | R2 | R3 | X | % age yield |
|---|---|---|---|---|---|
| H | H | H | CN | 97 | |
| H | H | H | COOCH3 | 95 | |
| H | H | H | COOC2H5 | 95 | |
| H | CH3 | H | CN | 96 | |
| H | CH3 | H | COOCH3 | 90 | |
| H | CH3 | H | COOC2H5 | 92 | |
| H | H | CH3 | COOC2H5 | 94 | |
| H | H | OH | CN | 94 | |
| H | H | OH | COOCH3 | 70 | |
| H | H | OH | COOC2H5 | 74 | |
| Br | H | H | CN | 52 | |
| Br | CH3 | H | CN | 52 | |
| Br | H | CH3 | CN | 48 |
Inhibitory Activity of Compounds 12a–12m against hCA II
| compound no. | IC50 (μM ± SEM) |
|---|---|
| 21.77 ± 3.32 | |
| 4.55 ± 0.22 | |
| 4.91 ± 1.13 | |
| 7.78 ± 0.08 | |
| zonisamide (std.) | 12.02 ± 0.33 |
Inhibitory Activity of Compounds 12a–12m against β-Glucuronidase
| compound no. | IC50 (μM ± SEM) |
|---|---|
| 789.5 ± 0.75 | |
| 670.7 ± 1.18 | |
| 971.3 ± 0.05 | |
| 440.1 ± 1.17 | |
| 773.9 ± 2.22 | |
| silymarin (std.) | 731.9 ± 3.34 |
Binding Scores and RMSD Values of Compounds 12a–12m against hCA IIa
| compound | binding score (kcal/mol) | RMSD |
|---|---|---|
| –1.439 | 0.9582 | |
| –1.595 | 0.6821 | |
| 1.017 | 1.0012 | |
| 1.265 | 0.8983 | |
| –4.265 | 0.8790 | |
| –1.688 | 0.9951 | |
| –1.022 | 0.9937 | |
| –13.627 | 0.5491 | |
| –11.252 | 0.8540 | |
| –9.886 | 0.8213 | |
| 1.256 | 1.2213 | |
| 1.024 | 1.0326 | |
| 1.289 | 1.2241 | |
| zonisamide | –2.873 | 0.8859 |
RMSD: RMSD of the docking pose compared to the cocrystal ligand position; “–” represents a positive or bad binding score.
Binding Scores and RMSD Values of Compounds 12a–12m against β-Glucuronidasea
| compound | binding score (kcal/mol) | RMSD |
|---|---|---|
| –1.892 | 1.0481 | |
| –2.339 | 0.8791 | |
| –1.492 | 0.8849 | |
| –5.581 | 0.9396 | |
| –6.749 | 0.9030 | |
| –1.238 | 1.0281 | |
| –4.319 | 1.1043 | |
| –2.994 | 1.0130 | |
| –7.894 | 0.8769 | |
| –5.827 | 0.7919 | |
| –2.987 | 0.9901 | |
| –1.485 | 0.9926 | |
| –2.473 | 0.9859 | |
| silymarin (std.) | –4.984 | 0.9683 |
RMSD: RMSD of the docking pose compared to the cocrystal ligand position; “–” represents a positive or bad binding score.
Figure 23D and 2D views of the binding interaction pattern of compounds 12h, 12i, and 12j with active site residues of human carbonic anhydrase II (hCA II).
Figure 3Binding interaction pattern of compounds 12e and 12i with active site residues of β-glucoronidase.
Figure 4(a) Carbonic anhydrase (PDB ID: 1BN1) and (b) β-glucuronidase (PDB ID: 5CZK).