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Literature DB >> 35988750

Regulatory Mechanisms through RNA Conformational Switching and Dynamics.

Philip C Bevilacqua¹, Blanton S Tolbert².

Abstract

Entities: Chemical

Mesh：

Substances：
Riboswitch

Year: 2022 PMID： 35988750 PMCID： PMC9484478 DOI： 10.1016/j.jmb.2022.167794

Source DB: PubMed Journal: J Mol Biol ISSN： 0022-2836 Impact factor: 6.151

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References

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16 in total

1. Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for Differential Binding of hnRNP Splicing Auxiliary Factors.

Authors: Liang-Yuan Chiu; Ann Emery; Niyati Jain; Andrew Sugarman; Nashea Kendrick; Le Luo; William Ford; Ronald Swanstrom; Blanton S Tolbert
Journal: J Mol Biol Date: 2022-07-21 Impact factor: 6.151

2. Conformational Effects of a Cancer-Linked Mutation in Pri-miR-30c RNA.

Authors: Alisha N Jones; Andreas Walbrun; Fabio Falleroni; Matthias Rief; Michael Sattler
Journal: J Mol Biol Date: 2022-06-24 Impact factor: 6.151

3. Upstream Flanking Sequence Assists Folding of an RNA Thermometer.

Authors: Elizabeth A Jolley; Kathryn M Bormes; Philip C Bevilacqua
Journal: J Mol Biol Date: 2022-08-08 Impact factor: 6.151

4. Solution Structure of NPSL2, A Regulatory Element in the oncomiR-1 RNA.

Authors: Yaping Liu; Aldrex Munsayac; Ian Hall; Sarah C Keane
Journal: J Mol Biol Date: 2022-06-16 Impact factor: 6.151

5. Binding of 30S Ribosome Induces Single-stranded Conformation Within and Downstream of the Expression Platform in a Translational Riboswitch.

Authors: Vanessa de Jesus; Jacklyn Schmid; Boris Fürtig
Journal: J Mol Biol Date: 2022-06-03 Impact factor: 6.151

Review 6. How does RNA fold dynamically?

Authors: David Z Bushhouse; Edric K Choi; Laura M Hertz; Julius B Lucks
Journal: J Mol Biol Date: 2022-06-01 Impact factor: 6.151

Regulatory Mechanisms through RNA Conformational Switching and Dynamics.

1. Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for Differential Binding of hnRNP Splicing Auxiliary Factors.

2. Conformational Effects of a Cancer-Linked Mutation in Pri-miR-30c RNA.

3. Upstream Flanking Sequence Assists Folding of an RNA Thermometer.

4. Solution Structure of NPSL2, A Regulatory Element in the oncomiR-1 RNA.

5. Binding of 30S Ribosome Induces Single-stranded Conformation Within and Downstream of the Expression Platform in a Translational Riboswitch.

Review 6. How does RNA fold dynamically?

Review 7. The promise of cryo-EM to explore RNA structural dynamics.

8. A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N⁶-Methyladenosine.

Review 9. Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing Data.

Review 10. Regulation of Gene Expression Through Effector-dependent Conformational Switching by Cobalamin Riboswitches.

Regulatory Mechanisms through RNA Conformational Switching and Dynamics.

1. Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for Differential Binding of hnRNP Splicing Auxiliary Factors.

2. Conformational Effects of a Cancer-Linked Mutation in Pri-miR-30c RNA.

3. Upstream Flanking Sequence Assists Folding of an RNA Thermometer.

4. Solution Structure of NPSL2, A Regulatory Element in the oncomiR-1 RNA.

5. Binding of 30S Ribosome Induces Single-stranded Conformation Within and Downstream of the Expression Platform in a Translational Riboswitch.

Review 6. How does RNA fold dynamically?

Review 7. The promise of cryo-EM to explore RNA structural dynamics.

8. A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine.

Review 9. Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing Data.

Review 10. Regulation of Gene Expression Through Effector-dependent Conformational Switching by Cobalamin Riboswitches.

8. A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N⁶-Methyladenosine.