| Literature DB >> 35982759 |
Sonu Kumar1, Debrupa Dutta1, Velayutham Ravichandiran2, Soumi Sukla1.
Abstract
SARS-CoV-2, the newly emerged virus of the Coronaviridae family is causing havoc worldwide. The novel coronavirus 2019 was first reported in Wuhan, China marked as the third highly infectious pathogenic virus of the twenty-first century. The typical manifestations of COVID-19 include cough, sore throat, fever, fatigue, loss of sense of taste and difficulties in breathing. Large numbers of SARS-CoV-2 infected patients have mild to moderate symptoms, however severe and life-threatening cases occur in about 5-10% of infections with an approximately 2% mortality rate. For the treatment of SARS-CoV-2, the use of neutralizing monoclonal antibodies (mAbs) could be one approach. The receptor binding domain (RBD) and N-terminal domain (NTD) situated on the peak of the spike protein (S-Protein) of SARS-CoV-2 are immunogenic in nature, therefore, can be targeted by neutralizing monoclonal antibodies. Several bioinformatics approaches highlight the identification of novel SARS-CoV-2 epitopes which can be targeted for the development of COVID-19 therapeutics. Here we present a summary of neutralizing mAbs isolated from COVID-19 infected patients which are anticipated to be a better therapeutic alternative against SARS-CoV-2. However, provided the vast escalation of the disease worldwide affecting people from all strata, affording expensive mAb therapy will not be feasible. Hence other strategies are also being employed to find suitable vaccine candidates and antivirals against SARS-CoV-2 that can be made easily available to the population. © King Abdulaziz City for Science and Technology 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.Entities:
Keywords: COVID-19; Coronaviridae; SARS-CoV-2; Spike protein; Therapeutic; mAbs
Year: 2022 PMID: 35982759 PMCID: PMC9383686 DOI: 10.1007/s13205-022-03281-5
Source DB: PubMed Journal: 3 Biotech ISSN: 2190-5738 Impact factor: 2.893
Fig. 1Schematic diagram of SARS-CoV-2 particle and spike protein gene partitioning: a SARS-CoV-2 virus particle consists of S-protein (spike protein), M-protein (Membrane protein), N-protein (Nucleocapsid-protein) and E-protein (Envelope-protein). b The spike protein consists of two subunits S1 and S2 subunit, S1 subunit is again subdivided into SP (signal peptide), NTD (N-terminal domain), RBD (receptor binding domain), RBD contain RBM (receptor binding motif), FP (fusion peptide), HR1 (heptad repeat region1), HR2 (heptad repeat region2), transmembrane region (TM), and cytoplasmic tail (CP), which exhibits different function. (Yu F. 2020)
Fig. 2Schematic diagram of SARS-CoV-2 life cycle. The coronavirus enters the host cell cytoplasm after binding with hACE2 receptor. a Spike protein of coronavirus recognise and attach with host cell hACE2 receptor; b After binding, conformational changes occur in the spike protein, leading to exposure of fusion peptide and fusion with the host cell membrane; c Both Heptad repeats of S2 subunit (HR1 and HR2) attract to each other to make the close distance between envelop protein of SARS-CoV-2 and host cell membrane; d, e HR1 and HR2 forms a 6-helix bundle (6-HB) that causes the virus envelope and host cell membrane to alter from hemifusion form to complete fusion, releasing the viral gene. (Yu et al. 2020a, b)
Fig. 3Schematic diagram illustrating SARS-CoV-2 RBD binding with ACE2 receptor. S1 subunit of S-protein consists of RBD and RBM as main interacting sites. SARS-CoV-2 has a high affinity for ACE2 receptors as well as with other auxillary receptors such as neuropilin-1, integrin and DC-SIGN. Upon attachment, the S2 subunit is cleaved by host cell protease (TMPRSS2) facilitating fusion with the host cell membrane and insertion of genetic material into the host cell cytoplasm
Fig. 4Steps involved in SARS-CoV-2 infection and entry into the host cell cytoplasm. (1). After binding with ACE2 receptor, SARS-CoV-2 spike protein is cleaved proteolytically by TMPRSS2 (transmembrane protease serine2) enzyme and after fusion with host cells membranes, enters into the host cell. (2) With the help of two open reading frames ORF1a and ORF1b, genomic RNA of SARS-CoV-2 translate to form non-structural protein. (3) nsp12 gene is responsible for the production of non-structural proteins which have RNA-dependent RNA polymerase (RdRp) activity. (4) Positive-sense genomic RNA (gRNA) is synthesised from negative-sense RNA intermediates as the templates and the sub-genomic RNAs (sgRNA). The gRNA is packed by structural protein and convert into virion proteins to assemble progeny virions. Structural proteins (S, E, M and N), and several accessory proteins of SARS-CoV-2 are encoded by shorter sub-genomic RNAs. At least six auxiliary proteins (3a, 6, 7a, 7b, 8, and 10) have been identified in SARS-CoV-2, and non-canonical sgRNAs are also depicted in the picture (7,8); (7,8). The virus undergoes budding and exocytosis (Hatmal and Alshaer 2020)
Neutralizing monoclonal antibodies against SARS-CoV-2
| Sr.no | Name of the antibodies | Type | Source | Preparation | Target on S-protein | References |
|---|---|---|---|---|---|---|
| 1 | 47D11 | IgG | Chimeric antibody | Transgenic mice, Hybridoma technology | RBD | (Wang et al. |
| 2 | B38 | IgG | Human | Peripheral blood of SARS-CoV2-infected patients | RBD | (Jahanshahlu and Rezaei |
| H4 | IgG | Human | Peripheral blood of SARS-CoV2-infected patients | RBD | (Jahanshahlu and Rezaei | |
| 3 | AB1 | IgG | Human | Phage displayed Fab, scFv& VH libraries | RBD | (Zeng et al. |
| 4 | CB6 | IgG | Human | B cells of convalescent patients and PBMCs | RBD | (Shi et al. |
| 5 | S309 | IgG | Human | Peripheral blood of SARS-infected patients | RBD | (Pinto et al. |
| 6 | 3F11 | sdAb | Human | Humanized phage display library | RBD | (Yu et al. |
| 7 | REGN10989, REGN10987, REGN10933, REGN10934 | IgG | Human | Transgenic mice, peripheral blood of SARS-CoV2 infected patients; next generation sequencing | RBD | (Hansen et al. |
| 8 | H014 | IgG | Chimeric antibody | Animal immunized and phage display | RBD | (Lv et al. |
| 9 | COV2-2196 and COV2-2130 | IgG | Human | Peripheral blood of convalescent patients | RBD | (Zost et al. |
| 10 | 4A8 and 0304-3H3 | IgG | Human | Peripheral blood of convalescent patients | NTD | (Chi et al. |
| 11 | CV1 CV30 CV35 | IgG | Human | PBMCs | RBD | (Seydoux et al. |
| 12 | BLN1 BLN2 BLN3 BLN10 BLN12 BLN14 | IgG | Human | Phage display, scFv library | NTD | (Noy-Porat et al. |
| 13 | REGN-CoV2 and LY-CoV555 | IgG | Human | Phage display library | RBD | (Cohen |
| 14 | CR3022 | IgG | Human | Gene cloning, protein expression | RBD | (Tian et al. |
| 15 | CT-P59 | IgG | Human | Phage display | RBD | (Kim et al. |
| 16 | COVA1-18 and COVA2-15 | IgG | Human | B cells of convalescent patients | RBD | (Brouwer et al. |
| 17 | 2A-Fc 1B-Fc | IgG | Llama | VHH-library | RBD | (Dong et al. |
| 18 | 311mab-31B5 and 311mab-32D4 | IgG | Human | B cells of convalescent patients | RBD | (Chen et al. |
| 19 | CC12.1 | IgG | Human | B cells of convalescent patients | RBD | (Yu et al. |
| 20 | ADI-55689, ADI-55993, ADI-56000, ADI-55688, ADI-56046, ADI-56010, ADI-55690, ADI-55951 | IgG | Human | Memory B cells of convalescent SARS donor | RBD | (Wec et al. |