Literature DB >> 35980571

Using FlyBase: A Database of Drosophila Genes and Genetics.

Victoria K Jenkins1, Aoife Larkin2, Jim Thurmond3.   

Abstract

Since 1992, FlyBase has provided a freely available online database of information about the model organism Drosophila melanogaster. Data in FlyBase is curated manually from research papers as well as computationally from a variety of relevant sources, to serve as an information hub that enables and accelerates research discovery. This chapter aims to give users new to the database an overview of the layout and types of data available, as well as introducing some tools with which to access the data. More experienced users will find useful information about recent improvements and descriptions to enable more efficient navigation of the database.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Database; Drosophila; Fly; FlyBase; Gene; Genome

Mesh：

Year:  2022        PMID： 35980571     DOI： 10.1007/978-1-0716-2541-5_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  49 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

Review 2.  Fifty-five years of enzyme classification: advances and difficulties.

Authors:  Andrew G McDonald; Keith F Tipton
Journal:  FEBS J       Date:  2013-10-17       Impact factor: 5.542

3.  Evolution of the Sequence Ontology terms and relationships.

Authors:  Christopher J Mungall; Colin Batchelor; Karen Eilbeck
Journal:  J Biomed Inform       Date:  2010-03-10       Impact factor: 6.317

4.  An integrative approach to ortholog prediction for disease-focused and other functional studies.

Authors:  Yanhui Hu; Ian Flockhart; Arunachalam Vinayagam; Clemens Bergwitz; Bonnie Berger; Norbert Perrimon; Stephanie E Mohr
Journal:  BMC Bioinformatics       Date:  2011-08-31       Impact factor: 3.169

Review 5.  Evolution of biomedical ontologies and mappings: Overview of recent approaches.

Authors:  Anika Groß; Cédric Pruski; Erhard Rahm
Journal:  Comput Struct Biotechnol J       Date:  2016-08-26       Impact factor: 7.271

6.  JBrowse: a dynamic web platform for genome visualization and analysis.

Authors:  Robert Buels; Eric Yao; Colin M Diesh; Richard D Hayes; Monica Munoz-Torres; Gregg Helt; David M Goodstein; Christine G Elsik; Suzanna E Lewis; Lincoln Stein; Ian H Holmes
Journal:  Genome Biol       Date:  2016-04-12       Impact factor: 13.583

7.  Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

Authors:  M Sivade Dumousseau; D Alonso-López; M Ammari; G Bradley; N H Campbell; A Ceol; G Cesareni; C Combe; J De Las Rivas; N Del-Toro; J Heimbach; H Hermjakob; I Jurisica; M Koch; L Licata; R C Lovering; D J Lynn; B H M Meldal; G Micklem; S Panni; P Porras; S Ricard-Blum; B Roechert; L Salwinski; A Shrivastava; J Sullivan; N Thierry-Mieg; Y Yehudi; K Van Roey; S Orchard
Journal:  BMC Bioinformatics       Date:  2018-04-11       Impact factor: 3.169

8.  Genenames.org: the HGNC and VGNC resources in 2019.

Authors:  Bryony Braschi; Paul Denny; Kristian Gray; Tamsin Jones; Ruth Seal; Susan Tweedie; Bethan Yates; Elspeth Bruford
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

9.  Evaluating FAIR maturity through a scalable, automated, community-governed framework.

Authors:  Mark D Wilkinson; Michel Dumontier; Susanna-Assunta Sansone; Luiz Olavo Bonino da Silva Santos; Mario Prieto; Dominique Batista; Peter McQuilton; Tobias Kuhn; Philippe Rocca-Serra; Mercѐ Crosas; Erik Schultes
Journal:  Sci Data       Date:  2019-09-20       Impact factor: 6.444

10.  The InterPro protein families and domains database: 20 years on.

Authors:  Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasaamy; Alex Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna Richardson; Gustavo A Salazar; Lowri Williams; Peer Bork; Alan Bridge; Julian Gough; Daniel H Haft; Ivica Letunic; Aron Marchler-Bauer; Huaiyu Mi; Darren A Natale; Marco Necci; Christine A Orengo; Arun P Pandurangan; Catherine Rivoire; Christian J A Sigrist; Ian Sillitoe; Narmada Thanki; Paul D Thomas; Silvio C E Tosatto; Cathy H Wu; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971
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