Literature DB >> 35978855

Deep learning segmentation of coronary calcified plaque from intravascular optical coherence tomography (IVOCT) images with application to finite element modeling of stent deployment.

Yazan Gharaibeh1, Pengfei Dong2, David Prabhu1, Chaitanya Kolluru1, Juhwan Lee1, Vlad Zimin3, Hozhabr Mozafari2, Hiram Bizzera3, Linxia Gu2, David Wilson1,4.   

Abstract

Because coronary artery calcified plaques can hinder or eliminate stent deployment, interventional cardiologists need a better way to plan interventions, which might include one of the many methods for calcification modification (e.g., atherectomy). We are imaging calcifications with intravascular optical coherence tomography (IVOCT), which is the lone intravascular imaging technique with the ability to image the extent of a calcification, and using results to build vessel-specific finite element models for stent deployment. We applied methods to a large set of image data (>45 lesions and > 2,600 image frames) of calcified plaques, manually segmented by experts into calcified, lumen and "other" tissue classes. In optimization experiments, we evaluated anatomical (x, y) versus acquisition (r,θ) views, augmentation methods, and classification noise cleaning. Noisy semantic segmentations are cleaned by applying a conditional random field (CRF). We achieve an accuracy of 0.85 ± 0.04, 0.99 ± 0.01, and 0.97 ± 0.01, and F-score of 0.88 ± 0.07, 0.97 ± 0.01, and 0.91 ± 0.04 for calcified, lumen, and other tissues classes respectively across all folds following CRF noise cleaning. As a proof of concept, we applied our methods to cadaver heart experiments on highly calcified plaques. Following limited manual correction, we used our calcification segmentations to create a lesion-specific finite element model (FEM) and used it to predict direct stenting deployment at multiple pressure steps. FEM modeling of stent deployment captured many features found in the actual stent deployment (e.g., lumen shape, lumen area, and location and number of apposed stent struts).

Entities:  

Keywords:  calcified plaque; deep learning; finite element model (FEM); intravascular optical coherence tomography (IVOCT); semantic segmentation

Year:  2019        PMID: 35978855      PMCID: PMC9380866          DOI: 10.1117/12.2515256

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  6 in total

1.  Consensus standards for acquisition, measurement, and reporting of intravascular optical coherence tomography studies: a report from the International Working Group for Intravascular Optical Coherence Tomography Standardization and Validation.

Authors:  Guillermo J Tearney; Evelyn Regar; Takashi Akasaka; Tom Adriaenssens; Peter Barlis; Hiram G Bezerra; Brett Bouma; Nico Bruining; Jin-man Cho; Saqib Chowdhary; Marco A Costa; Ranil de Silva; Jouke Dijkstra; Carlo Di Mario; Darius Dudek; Darius Dudeck; Erling Falk; Erlin Falk; Marc D Feldman; Peter Fitzgerald; Hector M Garcia-Garcia; Hector Garcia; Nieves Gonzalo; Juan F Granada; Giulio Guagliumi; Niels R Holm; Yasuhiro Honda; Fumiaki Ikeno; Masanori Kawasaki; Janusz Kochman; Lukasz Koltowski; Takashi Kubo; Teruyoshi Kume; Hiroyuki Kyono; Cheung Chi Simon Lam; Guy Lamouche; David P Lee; Martin B Leon; Akiko Maehara; Olivia Manfrini; Gary S Mintz; Kyiouchi Mizuno; Marie-angéle Morel; Seemantini Nadkarni; Hiroyuki Okura; Hiromasa Otake; Arkadiusz Pietrasik; Francesco Prati; Lorenz Räber; Maria D Radu; Johannes Rieber; Maria Riga; Andrew Rollins; Mireille Rosenberg; Vasile Sirbu; Patrick W J C Serruys; Kenei Shimada; Toshiro Shinke; Junya Shite; Eliot Siegel; Shinjo Sonoda; Shinjo Sonada; Melissa Suter; Shigeho Takarada; Atsushi Tanaka; Mitsuyasu Terashima; Troels Thim; Thim Troels; Shiro Uemura; Giovanni J Ughi; Heleen M M van Beusekom; Antonius F W van der Steen; Gerrit-Anne van Es; Gerrit-Ann van Es; Gijs van Soest; Renu Virmani; Sergio Waxman; Neil J Weissman; Giora Weisz
Journal:  J Am Coll Cardiol       Date:  2012-03-20       Impact factor: 24.094

2.  Impact of statins on serial coronary calcification during atheroma progression and regression.

Authors:  Rishi Puri; Stephen J Nicholls; Mingyuan Shao; Yu Kataoka; Kiyoko Uno; Samir R Kapadia; E Murat Tuzcu; Steven E Nissen
Journal:  J Am Coll Cardiol       Date:  2015-04-07       Impact factor: 24.094

3.  SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation.

Authors:  Vijay Badrinarayanan; Alex Kendall; Roberto Cipolla
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2017-01-02       Impact factor: 6.226

4.  OCT-BASED THREE DIMENSIONAL MODELING OF STENT DEPLOYMENT.

Authors:  Pengfei Dong; David Prabhu; David L Wilson; Hiram G Bezerra; Linxia Gu
Journal:  Int Mech Eng Congress Expo       Date:  2017-11

5.  Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation.

Authors:  Konstantinos Kamnitsas; Christian Ledig; Virginia F J Newcombe; Joanna P Simpson; Andrew D Kane; David K Menon; Daniel Rueckert; Ben Glocker
Journal:  Med Image Anal       Date:  2016-10-29       Impact factor: 8.545

6.  Deep neural networks for A-line-based plaque classification in coronary intravascular optical coherence tomography images.

Authors:  Chaitanya Kolluru; David Prabhu; Yazan Gharaibeh; Hiram Bezerra; Giulio Guagliumi; David Wilson
Journal:  J Med Imaging (Bellingham)       Date:  2018-12-03
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.