Literature DB >> 35974824

Crystal structure of 4-(2-meth-oxy-phen-yl)piper-azin-1-ium 3,5-dintrosalicylate.

Veerappan Subha1, Thangaraj Seethalakshmi1, Thangavelu Balakrishnan2, M Judith Percino3, Perumal Venkatesan4.   

Abstract

The title salt [systematic name: 4-(2-methoxyphenyl)piperazin-1-ium 2-carboxy-4,6-dinitrophenolate], C11H17N2O+·C7H3N2O7 -, exhibits secondary nitro-gen atoms (N-H) in the 2-meth-oxy-phenyl-piperazine (2MeOPP) cation, which is protonated with a phenolic hydrogen atom of 3,5-di-nitro-salicylic acid (DNSA). One of the oxygen atoms of the nitro group in the 3,5-di-nitro-salicylate anion is disordered over two orientations with occupancy factors of 0.65 (7) and 0.35 (7) . The 2-meth--oxy-phenyl-piperazinium cation and 3,5-di-nitro-salicylate anion are linked in the asymmetric unit by a bifurcated N-H⋯O hydrogen bond, which formed is between the H atom in the protonated piperazinium unit of the cation and the carb-oxy-lic acid group in the anion. The piperazine ring adopts a chair conformation. The crystal structure features N-H⋯O and C-H⋯O hydrogen bonds inter-actions, which lead to the formation of a sandwich-like arrangement. Hirshfeld surface analysis was used to determine the relative contributions of various inter-molecular inter-actions, indicating that that H⋯O/O⋯H (38. 3%) and H⋯H (31. 8%) contacts are the major contributors. © Subha et al. 2022.

Entities:  

Keywords:  1-(2-meth­oxy­phen­yl)piperazinium cation; 3,5-di­nitro­salicylic acid; crystal structure; proton transfer salts

Year:  2022        PMID: 35974824      PMCID: PMC9361365          DOI: 10.1107/S2056989022006831

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

1-(2-Meth­oxy­phen­yl)piperazine is a substituted cyclo aliphatic amine with two nitro­gen atoms at opposite positions of the six-membered ring. A substituent 2-meth­oxy­phenyl group is attached to one of the nitro­gen atoms while the other has one attached hydrogen atom (i.e. the secondary nitro­gen atom, N—H). Piperazine and substituted piperazine derivatives are often used as inter­mediates for a wide range of pharmaceuticals, polymers, dyes, corrosion inhibitors and surfactants. In particular, (2-meth­oxy­phen­yl)piperazine derivatives are used as 5-HT1A receptor ligands with reduced α1-adrenergic activity (Raghupathi et al., 1991 ▸; Orjales et al., 1995 ▸; Zhuang et al., 1998 ▸). 1-(2-Meth­oxy­phen­yl)piperazine-impregnated filters have been used for the detection of iso­cyanates in air (Sennbro et al., 2004 ▸). 1-Cinnamyl-4-(2-meth­oxy­phen­yl)piperazine derivatives are used as ligands for D 2 and D 3 dopamine and serotonin 5-HT1α receptors (Penjišević et al., 2007 ▸). The crystal structure of eleven protonated 4-(2-meth­oxy­phen­yl)piperazin-1-ium salts with eleven different substituted benzoic acids (namely, 4/2-chloro­benzoic acid, 4/2-bromo­benzoic acid, 4/2-iodo­benzoic acid, 2-fluoro­benzoic acid, 2-methyl­benzoic acid, 4-amino/4-nitro-benzoic acid, 3,5-di­nitro­benzoic acid and picric acid) and three aliphatic di­carb­oxy­lic acid [maleic acid, fumaric acid and (2R,3R)-tartaric acid] salts and their supra­molecular features have been reported (Harish Chinthal et al., 2020 ▸). As a continuation of our earlier study on the crystal structure and supra­molecular analysis of a monohydrated 1:1 adduct of bis­(piperazine-1,4-diium), 3,5-di­nitro-2-oxidobenzoate and piperazine, we have now investigated the crystal structure of 1-(2-meth­oxy­phen­yl) piperazinium 3,5-dinitro­salicylate (I). In this study, the crystal structure, Hirshfeld surface (HS) analysis, structural features and various inter­molecular inter­actions that exist in the title protonated salt are reported.

Structural commentary

The title salt crystallizes in the triclinic space group Pī with the asymmetric unit comprising one 2-meth­oxy­phenyl­piperazinium (2MeOPP)1+ cation and one 3,5-di­nitro­salicylate (DNSA)1− anion (Fig. 1 ▸). The piperazine ring in the cation adopts a chair conformation with puckering parameters Q = 0.582 (3) Å, θ = 176.3 (3)°, φ = 338 (4)°. One of the oxygen atoms of the nitro group (atom O4) in the 3,5-di­nitro­salicylate anion is disordered over two orientations with occupancy factors of 0.65 (7) and 0.35 (7). Both nitro groups, the phen­oxy­late oxygen atom and a carb­oxy­lic acid group in the anion are coplanar with an r.m.s. deviation of 0.0074 Å. A bifurcated inter­molecular N—H⋯O hydrogen bond [N3—H3A⋯O5 = 2.936 (3) Å and N3—H3A⋯O6 = 3.153 (3) Å] links the cation and anion in the asymmetric unit.
Figure 1

The mol­ecular structure of the title mol­ecular salt, (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

In the DNSA mol­ecule, deprotonation of the –COOH group (pK α COOH = 2.2) is easier than that of the phenolic –OH group (pK α OH = 6.8). 62 carboxyl­ate moiety structures (COO−) and 70 phenolate anion structures (O−) were found in a search of the Cambridge Structural Database (CSD, Version 5.43, update of March 2020; Groom et al., 2016 ▸), which is perhaps unexpected because the number of crystal structures containing phenolate anions is larger than those containing carboxyl­ate anions. These conflicting results may suggest that the formation of protonated salts of the DNSA mol­ecule with phenolate ions is favoured by the thermodynamic stability and the inter­molecular inter­actions between the phenolate anion and counter-ions in the respective crystal structures. The crystal structure of (I) suggests that the title salt was formed by deprotonation of the phenolic group in the DNSA mol­ecule. In order to better understand the deprotonation of the phenolic group in DNSA mol­ecule, the H-atom electron density in the difference-Fourier electron-density maps was calculated as they can yield additional insight into the proton-transfer behaviour. From Fig. 2 ▸, the electron density associated with atom H6 is shown to be smeared out between the O6 and O7 atoms, with the maximum lying closer to O6 atom than O7. It suggests that the H6A atom is attached to the carb­oxy­lic acid group and that deprotonation occurs through the phenolic group. As a result, the strong intra­molecular O6—H6A⋯O7 hydrogen bond formed. The inter­atomic distance between the phenolate oxygen atom, O7, and the O6 atom in the carb­oxy­lic acid group is 2.448 (2) Å, which also indicates that the strong intra­molecular hydrogen bond between the O6 and O7 atoms. Similar types of intra­molecular hydrogen bonds were observed in salicylic acid with a distance of 2.62 Å (Woińska et al., 2016 ▸; Montis & Hursthouse et al., 2012 ▸) and in other proton-transfer salts of DNSA in the range 2.409–2.540 Å (Smith et al., 1995 ▸, 1996 ▸, 1997 ▸, 2000 ▸, 2001a ▸,b ▸,c ▸,d ▸,e ▸, 2002 ▸, 2006 ▸). The proton in the carboxylc acid group is located between the carboxyl-O atom [O6 at 1.14 (3) Å] and the phenolate oxygen atom, [O7 at 1.37 (3) Å]. A similar trend was found in the various proton-transfer salts of DNSA (Smith et al., 2002 ▸).
Figure 2

Difference-Fourier electron-density map showing the electron density associated with the H atom involved in the O6—H6⋯O7 hydrogen bond.

Supra­molecular features

The oxygen atoms in both nitro groups (O1–O4), the carb­oxy­lic acid group (O5 and O6) and a phenolate moiety (O7) in the DNSA anion all act as acceptors for various inter­molecular N—H⋯O and C—H⋯O inter­actions, except for atom O4 (Table 1 ▸). In the cation, the O8 atom of the meth­oxy group is not involved in inter­molecular inter­actions. The oxygen atoms of the carb­oxy­lic acid group (O5 and O6) act as acceptors for a bifurcated N3—H3A⋯(O5,O6) inter­action, which links two neighbouring cations and anions into a centrosymmetric tetra­meric architecture, which is further stabilized by the C14—H14⋯O5v inter­action [3.481 (3) Å] and yields a macrocyclic ring structure with an (20) motif (Fig. 3 ▸). Atom O1 of the nitro group is involved in the centrosymmetric C2—H2⋯O1ii inter­action [3.581 (3) Å], which links two neighbouring (DNSA)1− units with an (10) motif (Fig. 4 ▸). Neighbouring dimeric DNSA1− units are further linked through the previously mentioned bifurcated N3—H3A⋯(O5,O6) inter­action and the N3—H3B⋯O7i [2.787 (3) Å], C10—H10A⋯O4A [3.118 (10) Å] inter­actions into a layered structure propagating parallel to the b axis (Fig. 5 ▸). Of the above three N—H⋯O inter­actions [N3—H3A⋯(O5,O6), and N3—H3B⋯O7], the N3—H3B⋯O7 inter­action is stronger [D⋯A = 2.787 (3) Å] than the other two, which is due to the fact that two charged components are involved in this inter­action, i.e. the phenolate O7 atom in DNSA−1 and the protonated N3—H3B unit in 2MeOPP+1. All of the above inter­actions facilitate the arrangement of the DNSA1− ions in a layered mol­ecular structure. The top and bottom sides of the DNSA1− layers are stabilized by the two adjacent cationic layers. As a result, a sandwich-like arrangement is observed. Briefly, the layered DNSA1− units form the core with the top and bottom sides of the cation layers arranged facing. An overall packing diagram is shown Fig. 6 ▸.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O6—H6A⋯O71.14 (3)1.37 (3)2.448 (2)154 (3)
N3—H3A⋯O50.94 (4)2.02 (4)2.936 (3)165 (3)
N3—H3A⋯O60.94 (4)2.44 (3)3.153 (3)133 (2)
N3—H3B⋯O7i 0.97 (3)1.83 (3)2.787 (3)166 (3)
C2—H2⋯O1ii 0.932.663.581 (3)174
C9—H9A⋯O3iii 0.972.443.254 (4)141
C10—H10B⋯O2iv 0.972.433.319 (3)152
C10—H10A⋯O4A i 0.972.503.118 (10)122
C14—H14⋯O5v 0.932.743.481 (3)137
C18—H18C⋯N4vi 0.962.743.552 (4)143

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

Figure 3

The bifurcated inter­molecular N3—H3A⋯(O5,O6) hydrogen bond and the C14—H14⋯O5 inter­action linking the 2MeOPP+1 cation and (DNSA)−1 anion into a centrosymmetric tetra­mer architecture with an (20) motif.

Figure 4

Part of the crystal structure of (I) showing the centrosymmetric dimer motif with the (10) motif formed by the C2—H2⋯O1 inter­action.

Figure 5

Part of the crystal structure of (I) showing the layered mol­ecular architecture formed by the N3—H3A⋯(O5,O6), N3—H3B⋯O7 and C10—H10⋯O4A inter­actions, which propagates parallel to the b axis.

Figure 6

Overall packing diagram for the title salt (I)

Hirshfeld surface analysis

Crystal Explorer 17.5 (Turner et al., 2017 ▸) was used to calculate the Hirshfeld surfaces (HS; McKinnon et al., 1998 ▸, 2004 ▸; Spackman & Jayatilaka, 2009 ▸) of the title protonated salt and generate two-dimensional fingerprint plots (full and decomposed, 2D-FP; Spackman & McKinnon, 2002 ▸) in order to investigate and qu­antify the different inter­molecular inter­actions. Distinct colours and intensities indicate short and long contacts, as well as the relative contribution of the different inter­actions in the solid state (Venkatesan et al., 2015 ▸, 2016 ▸). Two views of the HS mapped with d norm in the range −0.6295 to 1.3240 a.u. (front and back) are shown in Fig. 7 ▸. Bright red spots on the surface near O2, O3, O4A, O7, O6, H10B and H3B suggest that these atoms participate in hydrogen-bonding inter­actions (see Table 1 ▸). No significant pattern of convex blue and concave red triangles are observed in the shape-index (SI) diagram, indicating the absence of π-stacking inter­actions in the title salt. The 2D-FP plots show the relative contributions of the various non-covalent contacts (Fig. 8 ▸), indicating that inter­molecular O⋯H contacts [sharp symmetrical spikes are observed in the FP plot at d e + d i = 1.8 Å] make the most significant contribution (38.3%), followed by H⋯H contacts [symmetrical blunt spikes at d e + d i = 2.4 Å], which contribute 31.8%, while C⋯H, N⋯H, C⋯O, O⋯N, C⋯N and C⋯C contacts contribute 11.6%, 1.7%, 6.7%, 2.7%, 1.9%, 0.5% and 2.8%, respectively. Other significant peaks for various non-covalent contacts are indicated in the FP plot (Fig. 8 ▸).
Figure 7

Two different orientations of the Hirshfeld surface of the title salt mapped with (a) d norm and (b) shape index.

Figure 8

Two-dimensional fingerprint plots for the complete unit of the title salt indicating the various types of contacts.

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.43, update of March 2020; Groom et al., 2016 ▸) using Conquest (Bruno et al., 2002 ▸) for 1-(2-meth­oxy­phen­yl)piperazine gave 111 hits, of which seven hits were for the protonated piperazinium unit. In particular, the crystal structure of 1-(2-meth­oxy­phen­yl) piperazin-4-ium picrate, which like the title compound has a phenolate anion, has been reported (CSD refcode NEBGIK; Verdonk et al., 1997 ▸). In the case of the DNSA mol­ecule, 21 hits were observed for neutral DNSA mol­ecules and 65 and 71 hits for DNSA carboxyl­ate and DNSA phenolate, respectively.

Synthesis and crystallization

The title protonated salt was synthesized using 1-(2-meth­oxy­phen­yl)piperazine (Sigma Aldrich, 99%) and 3,5-di­nitro­salicylic acid (Merck India, 99.5%) in an equimolar ratio. The stoichiometrically (1 mmol) weighed starting materials were completely dissolved in 50 mL of methanol at room temperature and stirred continuously for 3 h. The homogeneous solution was filtered using Whatmann filter paper and placed in a dust-free atmosphere, and allowed to evaporate slowly at room temperature. A suitable single crystal was harvested after a growth period of 25 days.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The amine H atoms and O-bound H atoms were located in a difference-Fourier map and refined freely along with their isotropic displacement parameters. C-bound H atoms were included in calculated positions and treated as riding atoms [C—H = 0.93–0.98 Å, with U iso(H) = 1.2U eq(C)].
Table 2

Experimental details

Crystal data
Chemical formulaC11H17N2O+·C7H3N2O7−
M r 420.38
Crystal system, space groupTriclinic, P
Temperature (K)296
a, b, c (Å)7.3729 (6), 8.4842 (7), 15.5411 (13)
α, β, γ (°)88.954 (4), 81.333 (4), 89.352 (3)
V3)960.85 (14)
Z 2
Radiation typeMo Kα
μ (mm−1)0.12
Crystal size (mm)0.18 × 0.15 × 0.10
 
Data collection
DiffractometerBruker Kappa APEXII
Absorption correctionMulti-scan (SADABS; Bruker, 2012)
T min, T max 0.608, 0.745
No. of measured, independent and observed [I > 2σ(I)] reflections24028, 3513, 2035
R int 0.084
(sin θ/λ)max−1)0.602
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.048, 0.140, 1.02
No. of reflections3513
No. of parameters294
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.23, −0.21

Computer programs: APEX2, SAINT and XPREP (Bruker, 2012 ▸), SHELXT2014/5 (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), Mercury (Macrae et al., 2020 ▸) and PLATON (Spek, 2020 ▸).

Crystal structure: contains datablock(s) I, publication_text. DOI: 10.1107/S2056989022006831/ex2058sup1.cif CCDC reference: 2183987 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H17N2O+·C7H3N2O7Z = 2
Mr = 420.38F(000) = 440
Triclinic, P1Dx = 1.453 Mg m3
a = 7.3729 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.4842 (7) ÅCell parameters from 3479 reflections
c = 15.5411 (13) Åθ = 2.7–21.4°
α = 88.954 (4)°µ = 0.12 mm1
β = 81.333 (4)°T = 296 K
γ = 89.352 (3)°BLOCK, yellow
V = 960.85 (14) Å30.18 × 0.15 × 0.10 mm
Bruker Kappa APEXII diffractometer3513 independent reflections
Radiation source: fine-focus sealed tube2035 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.084
ω and φ scanθmax = 25.4°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −8→8
Tmin = 0.608, Tmax = 0.745k = −10→10
24028 measured reflectionsl = −18→18
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.048w = 1/[σ2(Fo2) + (0.0588P)2 + 0.1844P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.140(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.23 e Å3
3513 reflectionsΔρmin = −0.21 e Å3
294 parametersExtinction correction: SHELXL-2018/3 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.050 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
C10.2780 (3)0.2159 (3)0.07284 (15)0.0394 (6)
C20.3262 (3)0.1599 (3)−0.00995 (15)0.0403 (6)
H20.2459070.096812−0.0344910.048*
C30.4942 (3)0.1982 (3)−0.05608 (14)0.0381 (6)
C40.6246 (3)0.2917 (3)−0.02095 (15)0.0386 (6)
C50.5670 (3)0.3451 (3)0.06598 (14)0.0357 (6)
C60.3973 (3)0.3079 (3)0.11071 (15)0.0402 (6)
H60.3623070.3446930.1668210.048*
C70.6924 (4)0.4410 (3)0.10897 (16)0.0437 (6)
C80.7613 (3)0.7961 (3)0.32628 (14)0.0453 (7)
H8A0.7145290.8994640.3445770.054*
H8B0.6597910.7342550.3126520.054*
C90.9053 (4)0.8122 (3)0.24697 (16)0.0547 (8)
H9A0.8519850.8620880.1998820.066*
H9B1.0037530.8784250.2600130.066*
C101.0516 (4)0.5698 (3)0.29246 (16)0.0528 (7)
H10A1.1576470.6247080.3065800.063*
H10B1.0900790.4640330.2747580.063*
C110.9068 (4)0.5609 (3)0.37158 (15)0.0449 (7)
H11A0.8046930.4985910.3590760.054*
H11B0.9570810.5100020.4192580.054*
C120.7467 (3)0.7377 (3)0.48169 (14)0.0349 (6)
C130.6760 (3)0.6130 (3)0.53447 (15)0.0438 (6)
H130.6861220.5111510.5130720.053*
C140.5896 (4)0.6383 (4)0.61938 (17)0.0586 (8)
H140.5427660.5535030.6541720.070*
C150.5738 (4)0.7860 (4)0.65120 (17)0.0644 (9)
H150.5146400.8024360.7075610.077*
C160.6448 (4)0.9121 (4)0.60065 (18)0.0572 (8)
H160.6342571.0131380.6232080.069*
C170.7317 (3)0.8895 (3)0.51661 (15)0.0418 (6)
C180.7951 (4)1.1646 (3)0.4922 (2)0.0782 (10)
H18A0.6679231.1938630.5050740.117*
H18B0.8559211.2338840.4477520.117*
H18C0.8512311.1725100.5438150.117*
N10.0996 (3)0.1758 (3)0.12107 (14)0.0552 (6)
O4A0.6481 (12)0.2063 (16)−0.1968 (8)0.079 (3)0.65
N30.9804 (4)0.6538 (3)0.21950 (15)0.0557 (7)
N40.8428 (3)0.7185 (2)0.39644 (11)0.0368 (5)
O1−0.0033 (3)0.0951 (3)0.08644 (13)0.0810 (7)
O20.0596 (3)0.2239 (3)0.19541 (13)0.0777 (7)
O30.4386 (3)0.0337 (3)−0.16524 (12)0.0699 (6)
O50.6514 (3)0.4920 (2)0.18265 (11)0.0597 (6)
O60.8538 (2)0.4713 (2)0.06426 (11)0.0584 (6)
O70.7832 (2)0.3284 (2)−0.06190 (10)0.0530 (5)
O80.8105 (2)1.0068 (2)0.46251 (12)0.0556 (5)
N20.5361 (3)0.1362 (3)−0.14395 (14)0.0514 (6)
O4B0.690 (2)0.153 (3)−0.1854 (16)0.090 (7)0.35
H3A0.891 (5)0.589 (4)0.202 (2)0.087 (11)*
H3B1.070 (4)0.674 (3)0.168 (2)0.085 (10)*
H6A0.857 (5)0.415 (4)−0.002 (2)0.125 (13)*
U11U22U33U12U13U23
C10.0373 (14)0.0422 (15)0.0384 (14)−0.0082 (11)−0.0043 (11)0.0015 (11)
C20.0411 (15)0.0404 (15)0.0405 (14)−0.0013 (12)−0.0097 (12)−0.0042 (11)
C30.0407 (15)0.0418 (15)0.0325 (13)0.0016 (11)−0.0071 (11)−0.0069 (11)
C40.0351 (14)0.0442 (15)0.0359 (14)−0.0003 (12)−0.0030 (11)−0.0010 (11)
C50.0371 (15)0.0383 (14)0.0317 (13)−0.0034 (11)−0.0044 (11)−0.0012 (10)
C60.0443 (16)0.0433 (15)0.0323 (13)−0.0018 (12)−0.0035 (11)−0.0019 (11)
C70.0445 (16)0.0525 (17)0.0342 (14)−0.0060 (13)−0.0057 (12)−0.0039 (12)
C80.0415 (15)0.0600 (17)0.0341 (14)0.0018 (13)−0.0045 (12)0.0008 (12)
C90.0509 (18)0.075 (2)0.0384 (15)−0.0005 (15)−0.0074 (13)0.0067 (13)
C100.0530 (18)0.0567 (18)0.0472 (16)0.0080 (14)−0.0015 (13)−0.0198 (13)
C110.0485 (16)0.0438 (16)0.0425 (14)−0.0002 (12)−0.0063 (12)−0.0082 (12)
C120.0317 (13)0.0407 (14)0.0329 (13)0.0011 (11)−0.0064 (10)−0.0044 (11)
C130.0420 (15)0.0453 (16)0.0435 (15)−0.0025 (12)−0.0048 (12)0.0021 (12)
C140.0474 (17)0.082 (2)0.0441 (17)−0.0007 (15)−0.0009 (13)0.0173 (16)
C150.059 (2)0.097 (3)0.0361 (16)0.0148 (18)−0.0058 (14)−0.0090 (17)
C160.0563 (19)0.063 (2)0.0547 (18)0.0131 (15)−0.0133 (15)−0.0260 (15)
C170.0377 (15)0.0451 (16)0.0441 (15)0.0018 (12)−0.0097 (12)−0.0086 (12)
C180.069 (2)0.0371 (18)0.135 (3)0.0035 (15)−0.034 (2)−0.0234 (18)
N10.0508 (15)0.0625 (16)0.0497 (14)−0.0172 (12)0.0025 (12)−0.0061 (12)
O4A0.062 (5)0.135 (8)0.039 (2)−0.029 (4)0.005 (3)−0.027 (4)
N30.0492 (15)0.0839 (19)0.0336 (13)−0.0120 (14)−0.0018 (12)−0.0168 (12)
N40.0427 (12)0.0379 (12)0.0291 (10)0.0057 (9)−0.0038 (9)−0.0034 (8)
O10.0652 (14)0.1054 (18)0.0711 (14)−0.0428 (13)−0.0005 (11)−0.0193 (12)
O20.0637 (14)0.1058 (18)0.0572 (13)−0.0293 (12)0.0162 (11)−0.0244 (12)
O30.0679 (14)0.0792 (15)0.0646 (13)−0.0108 (12)−0.0125 (11)−0.0313 (11)
O50.0585 (12)0.0813 (14)0.0388 (10)−0.0220 (10)−0.0024 (9)−0.0154 (9)
O60.0467 (12)0.0858 (15)0.0409 (11)−0.0250 (10)0.0027 (9)−0.0117 (10)
O70.0413 (11)0.0782 (14)0.0374 (10)−0.0139 (9)0.0025 (8)−0.0111 (9)
O80.0570 (12)0.0373 (11)0.0730 (13)−0.0040 (9)−0.0105 (10)−0.0069 (9)
N20.0423 (14)0.0683 (17)0.0439 (14)0.0018 (12)−0.0067 (12)−0.0136 (12)
O4B0.048 (7)0.138 (16)0.078 (12)−0.028 (8)0.023 (7)−0.052 (9)
C1—C21.374 (3)C11—H11B0.9700
C1—C61.385 (3)C12—C131.384 (3)
C1—N11.453 (3)C12—C171.403 (3)
C2—C31.374 (3)C12—N41.416 (3)
C2—H20.9300C13—C141.395 (3)
C3—C41.429 (3)C13—H130.9300
C3—N21.460 (3)C14—C151.353 (4)
C4—O71.283 (3)C14—H140.9300
C4—C51.434 (3)C15—C161.376 (4)
C5—C61.373 (3)C15—H150.9300
C5—C71.479 (3)C16—C171.381 (3)
C6—H60.9300C16—H160.9300
C7—O51.225 (3)C17—O81.367 (3)
C7—O61.309 (3)C18—O81.422 (3)
C8—N41.465 (3)C18—H18A0.9600
C8—C91.506 (3)C18—H18B0.9600
C8—H8A0.9700C18—H18C0.9600
C8—H8B0.9700N1—O11.217 (3)
C9—N31.492 (4)N1—O21.225 (3)
C9—H9A0.9700O4A—N21.225 (8)
C9—H9B0.9700N3—H3A0.94 (4)
C10—N31.487 (3)N3—H3B0.97 (3)
C10—C111.503 (3)O3—N21.215 (3)
C10—H10A0.9700O6—H6A1.13 (4)
C10—H10B0.9700O7—H6A1.38 (4)
C11—N41.452 (3)N2—O4B1.228 (13)
C11—H11A0.9700
C2—C1—C6121.0 (2)C13—C12—C17118.0 (2)
C2—C1—N1119.0 (2)C13—C12—N4123.3 (2)
C6—C1—N1120.0 (2)C17—C12—N4118.6 (2)
C3—C2—C1119.3 (2)C12—C13—C14120.8 (2)
C3—C2—H2120.4C12—C13—H13119.6
C1—C2—H2120.4C14—C13—H13119.6
C2—C3—C4122.8 (2)C15—C14—C13120.1 (3)
C2—C3—N2116.5 (2)C15—C14—H14119.9
C4—C3—N2120.7 (2)C13—C14—H14119.9
O7—C4—C3124.4 (2)C14—C15—C16120.4 (3)
O7—C4—C5120.4 (2)C14—C15—H15119.8
C3—C4—C5115.3 (2)C16—C15—H15119.8
C6—C5—C4121.2 (2)C15—C16—C17120.4 (3)
C6—C5—C7119.1 (2)C15—C16—H16119.8
C4—C5—C7119.7 (2)C17—C16—H16119.8
C5—C6—C1120.5 (2)O8—C17—C16124.5 (2)
C5—C6—H6119.8O8—C17—C12115.3 (2)
C1—C6—H6119.8C16—C17—C12120.2 (2)
O5—C7—O6120.0 (2)O8—C18—H18A109.5
O5—C7—C5123.1 (2)O8—C18—H18B109.5
O6—C7—C5116.8 (2)H18A—C18—H18B109.5
N4—C8—C9109.1 (2)O8—C18—H18C109.5
N4—C8—H8A109.9H18A—C18—H18C109.5
C9—C8—H8A109.9H18B—C18—H18C109.5
N4—C8—H8B109.9O1—N1—O2122.7 (2)
C9—C8—H8B109.9O1—N1—C1118.9 (2)
H8A—C8—H8B108.3O2—N1—C1118.4 (2)
N3—C9—C8110.1 (2)C10—N3—C9110.9 (2)
N3—C9—H9A109.6C10—N3—H3A107 (2)
C8—C9—H9A109.6C9—N3—H3A112 (2)
N3—C9—H9B109.6C10—N3—H3B115.4 (18)
C8—C9—H9B109.6C9—N3—H3B104.9 (17)
H9A—C9—H9B108.1H3A—N3—H3B107 (3)
N3—C10—C11110.8 (2)C12—N4—C11117.54 (18)
N3—C10—H10A109.5C12—N4—C8115.96 (18)
C11—C10—H10A109.5C11—N4—C8110.66 (19)
N3—C10—H10B109.5C7—O6—H6A106.5 (19)
C11—C10—H10B109.5C4—O7—H6A102.6 (15)
H10A—C10—H10B108.1C17—O8—C18118.5 (2)
N4—C11—C10109.9 (2)O3—N2—O4A122.2 (7)
N4—C11—H11A109.7O3—N2—O4B118.7 (15)
C10—C11—H11A109.7O3—N2—C3118.5 (2)
N4—C11—H11B109.7O4A—N2—C3118.2 (8)
C10—C11—H11B109.7O4B—N2—C3119.7 (14)
H11A—C11—H11B108.2
C6—C1—C2—C3−1.0 (4)C15—C16—C17—C120.6 (4)
N1—C1—C2—C3179.6 (2)C13—C12—C17—O8177.5 (2)
C1—C2—C3—C41.4 (4)N4—C12—C17—O81.3 (3)
C1—C2—C3—N2−179.4 (2)C13—C12—C17—C16−1.4 (4)
C2—C3—C4—O7179.3 (2)N4—C12—C17—C16−177.7 (2)
N2—C3—C4—O70.2 (4)C2—C1—N1—O1−0.8 (4)
C2—C3—C4—C5−0.8 (4)C6—C1—N1—O1179.8 (3)
N2—C3—C4—C5−179.9 (2)C2—C1—N1—O2178.7 (2)
O7—C4—C5—C6179.6 (2)C6—C1—N1—O2−0.7 (4)
C3—C4—C5—C6−0.3 (3)C11—C10—N3—C954.4 (3)
O7—C4—C5—C7−0.9 (4)C8—C9—N3—C10−55.3 (3)
C3—C4—C5—C7179.2 (2)C13—C12—N4—C11−14.9 (3)
C4—C5—C6—C10.7 (4)C17—C12—N4—C11161.1 (2)
C7—C5—C6—C1−178.8 (2)C13—C12—N4—C8119.2 (3)
C2—C1—C6—C50.0 (4)C17—C12—N4—C8−64.7 (3)
N1—C1—C6—C5179.3 (2)C10—C11—N4—C12−162.6 (2)
C6—C5—C7—O5−1.3 (4)C10—C11—N4—C861.0 (3)
C4—C5—C7—O5179.1 (2)C9—C8—N4—C12161.0 (2)
C6—C5—C7—O6178.9 (2)C9—C8—N4—C11−61.9 (3)
C4—C5—C7—O6−0.6 (4)C16—C17—O8—C18−3.3 (4)
N4—C8—C9—N358.4 (3)C12—C17—O8—C18177.8 (2)
N3—C10—C11—N4−56.8 (3)C2—C3—N2—O3−13.1 (3)
C17—C12—C13—C141.1 (4)C4—C3—N2—O3166.1 (2)
N4—C12—C13—C14177.1 (2)C2—C3—N2—O4A155.4 (6)
C12—C13—C14—C150.1 (4)C4—C3—N2—O4A−25.4 (7)
C13—C14—C15—C16−0.9 (4)C2—C3—N2—O4B−172.7 (12)
C14—C15—C16—C170.5 (4)C4—C3—N2—O4B6.4 (13)
C15—C16—C17—O8−178.2 (2)
D—H···AD—HH···AD···AD—H···A
O6—H6A···O71.14 (3)1.37 (3)2.448 (2)154 (3)
N3—H3A···O50.94 (4)2.02 (4)2.936 (3)165 (3)
N3—H3A···O60.94 (4)2.44 (3)3.153 (3)133 (2)
N3—H3B···O7i0.97 (3)1.83 (3)2.787 (3)166 (3)
C2—H2···O1ii0.932.663.581 (3)174
C9—H9A···O3iii0.972.443.254 (4)141
C10—H10B···O2iv0.972.433.319 (3)152
C10—H10A···O4Ai0.972.503.118 (10)122
C14—H14···O5v0.932.743.481 (3)137
C18—H18C···N4vi0.962.743.552 (4)143
  18 in total

1.  Structure and serotonin 5-HT2C receptor activity of ortho- and meta-substituted phenylpiperazines.

Authors:  M L Verdonk; J W Voogd; J A Kanters; J Kroon; R den Besten; L Brandsma; D Leysen; J Kelder
Journal:  Acta Crystallogr B       Date:  1997-12-01

2.  1-cinnamyl-4-(2-methoxyphenyl)piperazines: synthesis, binding properties, and docking to dopamine (D(2)) and serotonin (5-HT(1A)) receptors.

Authors:  Jelena Penjisević; Vladimir Sukalović; Deana Andrić; Sladjana Kostić-Rajacić; Vukić Soskić; Goran Roglić
Journal:  Arch Pharm (Weinheim)       Date:  2007-09       Impact factor: 3.751

3.  New (2-methoxyphenyl)piperazine derivatives as 5-HT1A receptor ligands with reduced alpha 1-adrenergic activity. Synthesis and structure-affinity relationships.

Authors:  A Orjales; L Alonso-Cires; L Labeaga; R Corcóstegui
Journal:  J Med Chem       Date:  1995-04-14       Impact factor: 7.446

4.  CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals.

Authors:  Peter R Spackman; Michael J Turner; Joshua J McKinnon; Stephen K Wolff; Daniel J Grimwood; Dylan Jayatilaka; Mark A Spackman
Journal:  J Appl Crystallogr       Date:  2021-04-27       Impact factor: 3.304

5.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  Hydrogen atoms can be located accurately and precisely by x-ray crystallography.

Authors:  Magdalena Woińska; Simon Grabowsky; Paulina M Dominiak; Krzysztof Woźniak; Dylan Jayatilaka
Journal:  Sci Adv       Date:  2016-05-27       Impact factor: 14.136

8.  checkCIF validation ALERTS: what they mean and how to respond.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-01-01

9.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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