Literature DB >> 35968341

Constructing novel molecular subtypes and an 11-gene signature based on pyroptosis signaling for lung adenocarcinoma.

Lu Li1, Qing He1, Zhenchao Tao1, Rui Zhang2, Yayun Cui1, Liting Qian1.   

Abstract

Pyroptosis plays important roles in various cancers. In this study, we focused on lung adenocarcinoma (LUAD) and aimed to develop new molecular subtypes based on pyroptosis signaling. Pyroptosis-related genes were used as a basis to classify molecular subtypes through unsupervised consensus clustering. Gene set enrichment analysis was performed to characterize tumor microenvironment (TME) and functional pathways. Univariate Cox regression and least absolute shrinkage and selection operator (LASSO) analysis were conducted to identify prognostic genes for establishing a prognostic model. Three molecular subtypes were established with distinct overall survival, TME and enriched pathways. C3 subtype had the longest survival and the highest immune infiltration. 11 prognostic genes were screened to build a prognostic signature for predicting LUAD prognosis. This study emphasized the important role of pyroptosis in LUAD development. Pyroptosis was considered to play critical roles in regulating TME. Moreover, the 11-gene signature could serve as an indicator for predicting LUAD prognosis, and was potential targets for developing targeted drugs. AJCR
Copyright © 2022.

Entities:  

Keywords:  Lung adenocarcinoma; molecular subtypes; prognostic genes; pyroptosis; tumor microenvironment

Year:  2022        PMID: 35968341      PMCID: PMC9360228     

Source DB:  PubMed          Journal:  Am J Cancer Res        ISSN: 2156-6976            Impact factor:   5.942


  41 in total

1.  Downregulation of gasdermin D promotes gastric cancer proliferation by regulating cell cycle-related proteins.

Authors:  Wei Jie Wang; Di Chen; Ming Zuo Jiang; Bing Xu; Xiao Wei Li; Yi Chu; Yu Jie Zhang; Ren Mao; Jie Liang; Dai Ming Fan
Journal:  J Dig Dis       Date:  2018-02       Impact factor: 2.325

2.  PD-L1 controls cancer pyroptosis.

Authors:  María Teresa Blasco; Roger R Gomis
Journal:  Nat Cell Biol       Date:  2020-10       Impact factor: 28.824

3.  Characterizing caspase-1 involvement during esophageal disease progression.

Authors:  Gillian Barber; Akanksha Anand; James J Phelan; Aisling B Heeran; Ewelina Flis; Niamh E Clarke; Jenny A Watson; Julia Strangmann; Brian Flood; Hazel O'Neill; Dermot O'Toole; Finbar MacCarthy; Narayanasamy Ravi; John V Reynolds; Elaine W Kay; Michael Quante; Jacintha O'Sullivan; Emma M Creagh
Journal:  Cancer Immunol Immunother       Date:  2020-07-01       Impact factor: 6.968

4.  Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.

Authors:  Hyuna Sung; Jacques Ferlay; Rebecca L Siegel; Mathieu Laversanne; Isabelle Soerjomataram; Ahmedin Jemal; Freddie Bray
Journal:  CA Cancer J Clin       Date:  2021-02-04       Impact factor: 508.702

5.  The Molecular Signatures Database (MSigDB) hallmark gene set collection.

Authors:  Arthur Liberzon; Chet Birger; Helga Thorvaldsdóttir; Mahmoud Ghandi; Jill P Mesirov; Pablo Tamayo
Journal:  Cell Syst       Date:  2015-12-23       Impact factor: 10.304

6.  Profiling Tumor Infiltrating Immune Cells with CIBERSORT.

Authors:  Binbin Chen; Michael S Khodadoust; Chih Long Liu; Aaron M Newman; Ash A Alizadeh
Journal:  Methods Mol Biol       Date:  2018

7.  Pathogen blockade of TAK1 triggers caspase-8-dependent cleavage of gasdermin D and cell death.

Authors:  Pontus Orning; Dan Weng; Kristian Starheim; Dmitry Ratner; Zachary Best; Bettina Lee; Alexandria Brooks; Shiyu Xia; Hao Wu; Michelle A Kelliher; Scott B Berger; Peter J Gough; John Bertin; Megan M Proulx; Jon D Goguen; Nobuhiko Kayagaki; Katherine A Fitzgerald; Egil Lien
Journal:  Science       Date:  2018-10-25       Impact factor: 47.728

8.  Loss of p53 triggers WNT-dependent systemic inflammation to drive breast cancer metastasis.

Authors:  Max D Wellenstein; Seth B Coffelt; Danique E M Duits; Martine H van Miltenburg; Maarten Slagter; Iris de Rink; Linda Henneman; Sjors M Kas; Stefan Prekovic; Cheei-Sing Hau; Kim Vrijland; Anne Paulien Drenth; Renske de Korte-Grimmerink; Eva Schut; Ingrid van der Heijden; Wilbert Zwart; Lodewyk F A Wessels; Ton N Schumacher; Jos Jonkers; Karin E de Visser
Journal:  Nature       Date:  2019-07-31       Impact factor: 49.962

9.  Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.

Authors:  Kristian Cibulskis; Michael S Lawrence; Scott L Carter; Andrey Sivachenko; David Jaffe; Carrie Sougnez; Stacey Gabriel; Matthew Meyerson; Eric S Lander; Gad Getz
Journal:  Nat Biotechnol       Date:  2013-02-10       Impact factor: 54.908

10.  PD-L1-mediated gasdermin C expression switches apoptosis to pyroptosis in cancer cells and facilitates tumour necrosis.

Authors:  Junwei Hou; Rongce Zhao; Weiya Xia; Chiung-Wen Chang; Yun You; Jung-Mao Hsu; Lei Nie; Yeh Chen; Yu-Chuan Wang; Chunxiao Liu; Wei-Jan Wang; Yun Wu; Baozhen Ke; Jennifer L Hsu; Kebin Huang; Zu Ye; Yi Yang; Xianghou Xia; Yintao Li; Chia-Wei Li; Bin Shao; John A Tainer; Mien-Chie Hung
Journal:  Nat Cell Biol       Date:  2020-09-14       Impact factor: 28.213

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