| Literature DB >> 35967349 |
Ingrid Fricke-Galindo1, Alfonso Martínez-Morales1, Leslie Chávez-Galán2, Ranferi Ocaña-Guzmán2, Ivette Buendía-Roldán3, Gloria Pérez-Rubio1, Rafael de Jesus Hernández-Zenteno4, Abigail Verónica-Aguilar1, Aimé Alarcón-Dionet3, Hiram Aguilar-Duran3, Ilse Adriana Gutiérrez-Pérez1, Oscar Zaragoza-García5, Jesús Alanis-Ponce1, Angel Camarena1, Brandon Bautista-Becerril1, Karol J Nava-Quiroz1, Mayra Mejía6, Iris Paola Guzmán-Guzmán5, Ramcés Falfán-Valencia1.
Abstract
Interferons (IFNs) are a group of cytokines with antiviral, antiproliferative, antiangiogenic, and immunomodulatory activities. Type I IFNs amplify and propagate the antiviral response by interacting with their receptors, IFNAR1 and IFNAR2. In COVID-19, the IFNAR2 (interferon alpha and beta receptor subunit 2) gene has been associated with the severity of the disease, but the soluble receptor (sIFNAR2) levels have not been investigated. We aimed to evaluate the association of IFNAR2 variants (rs2236757, rs1051393, rs3153, rs2834158, and rs2229207) with COVID-19 mortality and to assess if there was a relation between the genetic variants and/or the clinical outcome, with the levels of sIFNAR2 in plasma samples from hospitalized individuals with severe COVID-19. We included 1,202 subjects with severe COVID-19. The genetic variants were determined by employing Taqman® assays. The levels of sIFNAR2 were determined with ELISA in plasma samples from a subgroup of 351 individuals. The rs2236757, rs3153, rs1051393, and rs2834158 variants were associated with mortality risk among patients with severe COVID-19. Higher levels of sIFNAR2 were observed in survivors of COVID-19 compared to the group of non-survivors, which was not related to the studied IFNAR2 genetic variants. IFNAR2, both gene, and soluble protein, are relevant in the clinical outcome of patients hospitalized with severe COVID-19.Entities:
Keywords: COVID-19; IFNAR2; SNP; genetic susceptibility; innate immunity; interferon alpha-beta; mortality risk; severe COVID-19
Mesh:
Substances:
Year: 2022 PMID: 35967349 PMCID: PMC9374460 DOI: 10.3389/fimmu.2022.949413
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 8.786
Demographic and clinical data of patients with severe COVID-19.
| Non-survivors, n = 426 (%)a | Survivors, n = 776 (%)a | pb | |
|---|---|---|---|
|
| 63 (55-71) | 56 (48-64) | <0.001 |
|
| 301 (70.7) | 496 (63.9) | 0.018 |
|
| 128 (30.0) | 217 (28.0) | 0.460 |
|
| 134 (31.5) | 203 (26.3) | 0.060 |
|
| 46 (10.8) | 53 (6.9) | 0.020 |
|
| 26 (6.1) | 21 (2.7) | 0.005 |
|
| 162 (38.2) | 254 (32.7) | 0.060 |
|
| 395 (92.7) | 468 (60.3) | <0.001 |
|
| 18.8 (11-28) | 7 (0-16) | <0.001 |
|
| 28.74 (25.7-33.1) | 29.7 (26.6-33.3) | 0.025 |
|
| 8 (4-8) | 8 (5-9) | 0.122 |
|
| 20 (13-29) | 18 (11-28) | 0.020 |
|
| |||
|
| 361 (84.7) | 651 (84.2) | 0.860 |
|
| 289 (68.0) | 526 (68.0) | 1.000 |
|
| 285 (67.1) | 575 (74.3) | 0.010 |
|
| 253 (59.5) | 511 (66.1) | 0.020 |
|
| 248 (58.2) | 485 (62.7) | 0.130 |
|
| 183 (43.1) | 353 (45.6) | 0.420 |
|
| 97 (22.8) | 203 (26.3) | 0.180 |
|
| 73 (17.1) | 118 (15.3) | 0.410 |
|
| 41 (9.6) | 116 (15.0) | 0.010 |
|
| 38 (8.9) | 82 (10.6) | 0.360a |
|
| 31 (7.3) | 88 (11.4) | 0.026 |
|
| 14 (3.3) | 68 (8.8) | <0.001 |
|
| 11 (2.6) | 25 (3.2) | 0.730 |
Continuous data are presented as median (interquartile range, IQR) and categorical data as n and frequency in percentage (%). aClinical data were not available for some individuals. bStatistical tests employed for the comparisons: Mann-Whitney U and Fisher’s Exact Test. BMI, body mass index; IMV, invasive mechanical ventilation; SAH, systemic arterial hypertension; T2DM, Type 2 diabetes mellitus.
Genetic association study of IFNAR2 variants with mortality in patients with severe COVID-19.
|
| All, n = 1202 | Non-survivors, n = 426 | Survivors, n = 776 | p | OR (CI 95%) | FDRb | |
|---|---|---|---|---|---|---|---|
|
| |||||||
|
| 412 (0.343) | 126 (0.296) | 286 (0.368) | 0.029 | 1 (reference) | 0.072 | |
|
| 1,387 (0.577) | 461 (0.541) | 926 (0.597) | 0.008 | 1.25 (1.06-1.48) | 0.029 | |
|
| |||||||
|
| 396 (0.330) | 119 (0.280) | 277 (0.356) | 0.023 | 1 (reference) | 0.116 | |
|
| 1,333 (0.554) | 443 (0.520) | 890 (0.573) | 0.012 | 1.24 (1.05-1.47) | 0.029 | |
|
| |||||||
|
| 400 (0.333) | 122 (0.286) | 278 (0.358) | 0.039 | 1 (reference) | 0.065 | |
|
| 1,364 (0.567) | 456 (0.535) | 908 (0.585) | 0.018 | 1.22 (1.03-1.45) | 0.030 | |
|
| |||||||
|
| 389 (0.324) | 122 (0.286) | 267 (0.344) | 0.099 | NA | 0.124 | |
|
| 1,356 (0.564) | 456(0.535) | 900 (0.580) | 0.035 | 1.20 (1.01-1.42) | 0.043 | |
|
| |||||||
|
| 811 (0.675) | 286 (0.671) | 525 (0.677) | 0.974 | NA | 0.974 | |
|
| 1,970 (0.819) | 697 (0.818) | 1,273 (0.820) | 0.895 | NA | 0.895 | |
aDeviation from Hardy-Weinberg Equilibrium p<0.01; bBenjamini-Hochberg method. CI, confidence interval; FDR, false discovery rate; NA, does not apply; OR, odds ratio.
Dominant model analyses for IFNAR2 genetic variants were included in the study.
|
| Genotypes | Non-survivors | Survivors | p | OR (CI 95%) | FDRb |
|---|---|---|---|---|---|---|
|
| TT | 126 (0.296) | 286 (0.369) | 0.011 | 1.38 (1.07-1.79) | 0.027 |
|
| AA | 119 (0.279) | 277 (0.357) | 0.006 | 1.43 (1.10-1.85) | 0.030 |
|
| AA | 122 (0.286) | 278 (0.358) | 0.011 | 1.39 (1.07-1.79) | 0.019 |
|
| GG | 122 (0.286) | 267 (0.344) | 0.041 | 1.3 (1.01-1.69) | 0.061 |
|
| TT | 286 (0.671) | 525 (0.677) | 0.854 | NA | 0.854 |
aDeviation from Hardy Weinberg Equilibrium p<0.01; bBenjamini-Hochberg method. CI, confidence interval; FDR, false discovery rate; NA, it does not apply; OR, odds ratio.
Association analysis of IFNAR2 haplotypes (rs3153/rs2229207/rs1051393/rs2834158) with mortality risk among patients with severe COVID-19.
| Haplotypes | Frequencies | p | OR | |
|---|---|---|---|---|
| Non-survivors | Survivors | |||
|
| 0.421 | 0.383 | 0.068 | NA |
|
| 0.334 | 0.391 | 0.005 | 0.78 (0.65-0.93) |
|
| 0.166 | 0.161 | 0.740 | NA |
|
| 0.025 | 0.024 | 0.840 | NA |
|
| 0.020 | 0.010 | 0.040 | 2.08 (1.03-4.19) |
|
| 0.010 | 0.013 | 0.600 | NA |
Linkage disequilibrium analysis performed in Haploview, Block studied through the solid spine method. OR, odds ratio; NA, it does not apply.
Figure 1Soluble IFNAR2 (sIFNAR2) plasma levels of severe COVID-19 patients (n = 347) divided into non-survivor (n = 108, yellow dots) and survivor (n = 239, purple dots). sIFNAR2 level was evaluated by ELISA. Statistical comparison was performed using Mann-Whitney U Test, p < 0.05.
Figure 2Soluble IFNAR2 (sIFNAR2) plasma levels of severe COVID-19 patients (n = 347) divided according to the comorbidity systemic arterial hypertension (SAH) (Yes: n = 121, yellow dots; No: n = 226, purple dots). sIFNAR2 level was evaluated by ELISA. Statistical comparison was performed using Mann-Whitney U Test, p < 0.01.