Literature DB >> 35965648

Complete mitochondrial genome of Liorhyssus hyalinus (Hemiptera: Rhopalidae).

Qin Chen1, Xiaoke Tian1, Yongqin Li1, Qianquan Chen1.   

Abstract

The mitogenome of Liorhyssus hyalinus (Fabricius, 1794), decoded using next-generation sequencing, is the first report of Liorhyssus. The mitogenomic size was 16,355 bp with 41.99% A, 33.44% T, 14.53% C, and 10.05% G (OM328158). The phylogenetic tree, constructed with the amino acid sequences of 13 protein-coding genes, showed that L. hyalinus clustered together with other species in Rhopalidae, which supported the monophyly of each family in Pentatomomorpha.
© 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Mitogenome; hyaline grass bug; scentless plant bug

Year:  2022        PMID: 35965648      PMCID: PMC9364729          DOI: 10.1080/23802359.2022.2107456

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.610


Liorhyssus hyalinus (Fabricius, 1794), with 20 synonymic names, is distributed across all continents except the coldest parts in the north and south (Hradil et al. 2007). It is found at elevations from 360 m below sea level to 3660 m, and causes serious damage to many low-growing crop plants, especially those in the family Asteraceae, by feeding primarily on the reproductive parts of plants, including buds, flowers, seeds, and fruits. Owing to their strong plasticity in size and coloration, identifying them based on their morphological characteristics is difficult (Hradil et al. 2007). The mitogenome of L. hyalinus was decoded to overcome this challenge. Specimens of L. hyalinus were collected from the campus of Guizhou Normal University (26°23′11″N, 106°37′45″E) in July 2021. The specimens were deposited at the Museum of Guizhou Normal University (https://sjxy.gznu.edu.cn/info/1771/4547.htm, Qianquan Chen, qqchen@gznu.edu.cn) under voucher number GZNU-cqq-132. Total DNA was isolated from the muscle tissue of an adult specimen (Chen et al. 2020). The mitogenome was sequenced using the Illumina Hiseq X Ten System at Sangon Biotechnology Company (Shanghai, China). The mitogenome was assembled using SOAPdenovo2 (version 2.04) (Luo et al. 2012). Protein-coding genes (PCGs) were identified by BLAST comparison with the Chorosoma macilentum mitogenome (MN412594) (Zhao et al. 2021). The transfer RNAs (tRNAs) were identified with MITOS2 (Bernt et al. 2013), and ribosomal RNAs and non-coding control regions were determined by the boundary of tRNAs. A phylogenetic tree was constructed with the amino acid sequences of 13 PCGs belonging to the infraorder Pentatomomorpha, using the MrBayes method with partition models in PhyloSuite (Zhang et al. 2020). Himacerus nodipes (JF927832; Hemiptera: Nabidae) was selected as an outgroup representative. The mitogenomic size of L. hyalinus (OM328158) was 16,355 bp. Liorhyssus hyalinus shared a gene distribution pattern similar to that of C. macilentum (MN412594). A total of 33 bp intergenic spacers were distributed across eight locations. The shortest intergenic spacer was 1 bp, whereas the longest was 19 bp. A total of 27 bp overlaps were distributed across six locations. The shortest overlap was 1 bp and the longest overlap was 8 bp. The non-coding control region was 1781 bp in length. The initiation codon for most PCGs was ATN, except for cox1 (TTG). Seven genes used either T or TA as incomplete stop codons. The phylogenetic tree showed that L. hyalinus clustered together with other species in Rhopalidae and grouped sibling species with Stictopleurus subviridis. The tree supported the monophyly of each family of Pentatomomorpha. The mitogenomic information on L. hyalinus can shed light on its identification and geographic origin (Figure 1).
Figure 1.

Bayesian phylogenetic tree of Pentatomomorpha species. The posterior probabilities are labeled at each node. The GenBank accession numbers of sequences are listed after the species name.

Bayesian phylogenetic tree of Pentatomomorpha species. The posterior probabilities are labeled at each node. The GenBank accession numbers of sequences are listed after the species name.
  5 in total

1.  PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.

Authors:  Dong Zhang; Fangluan Gao; Ivan Jakovlić; Hong Zou; Jin Zhang; Wen X Li; Gui T Wang
Journal:  Mol Ecol Resour       Date:  2019-11-06       Impact factor: 7.090

2.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

3.  The complete mitochondrial genome of Eysarcoris guttigerus (Hemiptera: Pentatomidae).

Authors:  Qianquan Chen; Xiaojuan Niu; Zheng Fang; Qingbei Weng
Journal:  Mitochondrial DNA B Resour       Date:  2020-01-16       Impact factor: 0.658

4.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

  5 in total

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