Literature DB >> 35965303

Anatilimnocola floriformis sp. nov., a novel member of the family Pirellulaceae from a boreal lake, and emended description of the genus Anatilimnocola.

Irina S Kulichevskaya1, Anastasia A Ivanova1, Nataliya E Suzina2, Jaap S Sinninghe Damsté3,4, Svetlana N Dedysh5.   

Abstract

Planctomycetes of the family Pirellulaceae are commonly addressed as budding aquatic bacteria with a complex lifestyle. Although this family is well represented by cultured and taxonomically characterized isolates, nearly all of them were obtained from brackish or marine habitats. The examples of described freshwater Pirellulaceae planctomycetes are limited to two species only, Pirellula staley and 'Anatilimnocola aggregata'. In this study, we characterized a novel freshwater planctomycete of the genus 'Anatilimnocola', strain PX40T, which was isolated from a boreal eutrophic lake. Strain PX40T was represented by budding, unpigmented, ellipsoidal to pear-shaped cells, which often occurred in characteristic flower-like rosettes. Cells were covered by bundles of fimbriae; crateriform-like structures were localized on a reproductive cell pole only. These planctomycetes were obligately aerobic, heterotrophic bacteria that utilized various sugars and some polysaccharides, and were highly sensitive to NaCl. Growth occurred in the pH range 5.0-7.5 (with an optimum at pH 6.5-7.0), and at temperatures between 15 and 30 °C (with an optimum at 22-25 °C). The major fatty acids of strain PX40T were C18:1ω9c, C16:0, and 16:1ω7c; cells also contained a wide variety of hydroxy- and dihydroxy-fatty acids and a C31:9 alkene. The major intact polar lipids were diacylglyceryl-(N,N,N)-trimethylhomoserines. The 16S rRNA gene sequence of strain PX40T displayed 96.6% similarity to that of 'Anatilimnocola aggregata' ETA_A8T. The genome of strain PX40T was 8.93 Mb in size and contained one copy of rRNA operon, 76 tRNA genes and 7092 potential protein-coding genes. The DNA G+C content was 57.8%. The ANI value between strain PX40T and 'Anatilimnocola aggregata' ETA_A8T was 78.3%, suggesting that these planctomycetes represent distinct species. We, therefore, propose a novel species of the genus 'Anatilimnocola', 'A. floriformis' sp. nov., with strain PX40T (= KCTC 92369T = VKM B-3621T = UQM 41463T) as the type strain.
© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Anatilimnocola; Boreal lake; Cultivation studies; Family Pirellulaceae; Freshwater planctomycetes

Mesh:

Substances:

Year:  2022        PMID: 35965303     DOI: 10.1007/s10482-022-01769-x

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.158


  7 in total

1.  Planctomycetes in boreal and subarctic wetlands: diversity patterns and potential ecological functions.

Authors:  Svetlana N Dedysh; Anastasia A Ivanova
Journal:  FEMS Microbiol Ecol       Date:  2019-02-01       Impact factor: 4.194

Review 2.  On the maverick Planctomycetes.

Authors:  Sandra Wiegand; Mareike Jogler; Christian Jogler
Journal:  FEMS Microbiol Rev       Date:  2018-11-01       Impact factor: 16.408

3.  Blastopirellula retiformator sp. nov. isolated from the shallow-sea hydrothermal vent system close to Panarea Island.

Authors:  Nicolai Kallscheuer; Sandra Wiegand; Anja Heuer; Stephanie Rensink; Alje S Boersma; Mareike Jogler; Christian Boedeker; Stijn H Peeters; Patrick Rast; Mike S M Jetten; Manfred Rohde; Christian Jogler
Journal:  Antonie Van Leeuwenhoek       Date:  2020-01-01       Impact factor: 2.271

4.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

5.  Interactive Tree Of Life (iTOL) v4: recent updates and new developments.

Authors:  Ivica Letunic; Peer Bork
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

6.  MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes.

Authors:  Carlos A Ruiz-Perez; Roth E Conrad; Konstantinos T Konstantinidis
Journal:  BMC Bioinformatics       Date:  2021-01-06       Impact factor: 3.169

7.  The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms.

Authors:  Nicolai Kallscheuer; Olga Jeske; Birthe Sandargo; Christian Boedeker; Sandra Wiegand; Pascal Bartling; Mareike Jogler; Manfred Rohde; Jörn Petersen; Marnix H Medema; Frank Surup; Christian Jogler
Journal:  Commun Biol       Date:  2020-06-12
  7 in total

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