| Literature DB >> 35960099 |
Bing Han1,2,3,4, Yongxiang Wang1,3,4, Jing Zhao1,3,4, Qingsu Lan2, Jin Zhang1,3,4, Xiaoxue Meng1,3,4, Jianjian Jin2, Ming Bai1,2,3,4, Zheng Zhang1,2,3,4.
Abstract
Abnormal development of the atrioventricular ring can lead to the formation of a bypass pathway and the occurrence of Wolff-Parkinson-White (WPW) syndrome. The genetic mechanism underlying the sporadic form of WPW syndrome remains unclear. Existing evidence suggests that both T-box transcription factor 3 (TBX3) and T-box transcription factor 2 (TBX2) genes participate in regulating annulus fibrosus formation and atrioventricular canal development. Thus, we aimed to examine whether single-nucleotide polymorphisms (SNPs) in the TBX3 and TBX2 genes confer susceptibility to WPW syndrome in a Han Chinese Population. We applied a SNaPshot SNP assay to analyze 5 selected tagSNPs of TBX3 and TBX2 in 230 patients with sporadic WPW syndrome and 231 sex- and age-matched controls. Haplotype analysis was performed using Haploview software. Allele C of TBX3 rs1061657 was associated with a higher risk of WPW syndrome (odds ratio [OR] = 1.41, 95% confidence interval [CI]: 1.08-1.83, P = .011) and left-sided accessory pathways (OR = 1.40, 95% CI: 1.07-1.84, P = .016). However, allele C of TBX3 rs8853 was likely to reduce these risks (OR = 0.71, 95% CI: 0.54-0.92, P = .011; OR = 0.70, 95% CI: 0.53-0.92, P = .011, respectively). The data revealed no association between TBX3 rs77412687, TBX3 rs2242442, or TBX2 rs75743672 and WPW syndrome. TBX3 rs1061657 and rs8853 are significantly associated with sporadic WPW syndrome among a Han Chinese population. To verify our results, larger sample sizes are required in future studies.Entities:
Mesh:
Year: 2022 PMID: 35960099 PMCID: PMC9371508 DOI: 10.1097/MD.0000000000030046
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.817
Details of SNPs and primer sequences used in this study.
| Gene | SNP ID | Alt | Ch | Region | Position | Primer | Sequence |
|---|---|---|---|---|---|---|---|
|
| rs1061657 | T>C | 12 | 3′UTR | 115,108,136 | Forward | ACCCTCCCCTGACTGTCCATCT |
| Reverse | GTGCCACTTTCCAGCTCCACTT | ||||||
| Extension | TTTTTTTTTTTTTGAAGGTATATTTTGTGTTATAGTTGTTGAT | ||||||
| rs8853 | T>C | 12 | 3′UTR | 115,108,907 | Forward | CGACATGAATCCTGCTACAGAGC | |
| Reverse | CCAATCCTTTGCCCTCAAATCA | ||||||
| Extension | TTTTTTTTTTTTTTGCCCTCAAATCAGTGACCCA | ||||||
| rs77412687 | A>G | 12 | 3′UTR | 115,108,334 | Forward | ACCCTCCCCTGACTGTCCATCT | |
| Reverse | GTGCCACTTTCCAGCTCCACTT | ||||||
| Extension | TTTTTTTTTTTTTTTTTCAGAGGCTGCGGTTTGACTT | ||||||
| rs2242442 | G>A | 12 | 5′UTR | 115,121,189 | Forward | AAAGGAGGCAGAAATCACAACTAATG | |
| Reverse | TCGCTTCTGAAACCGACGTTC | ||||||
| Extension | TTTTTTTTTTTTTTTTTTTTGCACTTCAAAGGGAGGAGGG | ||||||
|
| rs75743672 | C>A | 17 | Upstream | 59,477,903 | Forward | GAGGACGAGGTGGAGGACGAC |
| Reverse | CTACCTCCCGGACTTGGTGATG | ||||||
| Extension | TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACCAGTTCCACAAGCTAGG |
Demographic characteristics of the study population.
| Total | Control | Case | ||
|---|---|---|---|---|
| N = 461, n (%) | N = 231, n (%) | N = 230, n (%) | ||
| Gender | .587 | |||
| Male | 291 (63.12%) | 143 (61.9%) | 148 (64.35%) | |
| Female | 170 (36.88%) | 88 (38.1%) | 82 (35.65%) | |
| Age | 46.8 ± 14.8 | 47.6 ± 14.4 | 46.0 ± 15.2 | .250 |
HWE of the case and control groups.
| HWE | |||||
|---|---|---|---|---|---|
| Control | Case | ||||
| Gene | SNP | MAF | MAF | ||
|
| rs1061657 | 0.390 | .071 | 0.474 | .148 |
| rs8853 | 0.422 | .060 | 0.339 | .077 | |
| rs77412687 | 0.065 | .607 | 0.074 | .024 | |
| rs2242442 | 0.457 | .353 | 0.461 | .895 | |
|
| rs75743672 | 0.325 | .072 | 0.278 | .625 |
Association of TBX3 and TBX2 polymorphisms with accessory AV connections.
| Control | Case | OR (95% CI) | AOR | BH adjusted | |||
|---|---|---|---|---|---|---|---|
| rs1061657 (T>C) | |||||||
| TT | 79 | 58 | 1 (reference) | 1 (reference) | |||
| TC | 124 | 126 | 1.38 (0.91–2.11) | .129 | 1.37 (0.90–2.09) | .146 |
|
| CC | 28 | 46 | 2.24 (1.25–3.99) |
| 2.24 (1.25–4.00) |
|
|
| Dominant model (TC + CC vs TT) | 152/79 | 172/58 | 1.54 (1.03–2.31) |
| 1.53 (1.02–2.30) |
| .166 |
| Recessive model (CC vs TC + TT) | 28/203 | 46/184 | 1.81 (1.09–3.02) |
| 1.82 (1.09–3.04) |
| .179 |
| Allele T frequency | 282 | 242 | 1.41 (1.09–1.83) |
| 1.41 (1.08–1.83) |
|
|
| Allele C frequency | 180 | 218 | |||||
| rs8853 (T>C) | |||||||
| TT | 70 | 94 | 1 (reference) | 1 (reference) | |||
| TC | 127 | 116 | 0.68 (0.46–1.01) | .058 | 0.68 (0.45–1.01) | .057 |
|
| CC | 34 | 20 | 0.44 (0.23–0.83) |
| 0.44 (0.23–0.84) |
|
|
| Dominant model (TC + CC vs TT) | 161/70 | 136/94 | 0.63 (0.43–0.92) |
| 0.63 (0.43–0.93) |
| .166 |
| Recessive model (CC vs TT + CT) | 34/197 | 20/210 | 0.55 (0.31–0.99) |
| 0.56 (0.31–1.01) | .054 | .179 |
| Allele T frequency | 267 | 304 | 0.70 (0.54–0.92) |
| 0.71 (0.54–0.92) |
|
|
| Allele C frequency | 195 | 156 | |||||
| rs77412687 (A>G) | |||||||
| AA | 201 | 200 | 1 (reference) | 1 (reference) | |||
| AG | 30 | 26 | NA | NA | NA | NA | NA |
| GG | 0 | 4 | NA | NA | NA | NA | NA |
| Dominant model (AG + GG vs AA) | 201/30 | 200/30 | 1.01 (0.58–1.73) | .986 | 1.02 (0.59–1.76) | .944 | .944 |
| Recessive model (GG vs AA + AG) | 231/0 | 226/4 | NA | NA | NA | NA | NA |
| Allele A frequency | 432 | 426 | 1.15 (0.69–1.91) | .592 | 1.17 (0.70–1.94) | .552 | .792 |
| Allele G frequency | 30 | 34 | |||||
| rs2242442 (G>A) | |||||||
| GG | 72 | 66 | 1 (reference) | 1 (reference) | |||
| GA | 107 | 116 | 1.18 (0.77–1.81) | .439 | 1.18 (0.77–0.81) | .437 | .707 |
| AA | 52 | 48 | 1.01 (0.60–1.69) | .979 | 1.04 (0.62–1.74) | .890 | .707 |
| Dominant model (GA + AA vs GG) | 72/159 | 66/164 | 1.13 (0.76–1.68) | .562 | 1.14 (0.76–1.70) | .529 | .635 |
| Recessive model (AA vs GG + GA) | 52/179 | 48/182 | 0.91 (0.58–1.41) | .669 | 0.94 (0.60–1.46) | .767 | .852 |
| Allele G frequency | 251 | 248 | 1.02 (0.79–1.32) | .900 | 1.03 (0.80–1.34) | .813 | .887 |
| Allele A frequency | 211 | 212 | |||||
| rs75743672 (C>A) | |||||||
| CC | 99 | 118 | 1 (reference) | 1 (reference) | |||
| CA | 114 | 96 | 0.71 (0.48–1.03) | .074 | 0.71 (0.48–1.03) | .072 | .314 |
| AA | 18 | 16 | 0.75 (0.36–1.54) | .427 | 0.75 (0.36–1.55) | .434 | .314 |
| Dominant model (CA + AA vs CC) | 99/132 | 118/112 | 0.71 (0.49–1.03) | .070 | 0.71 (0.49–1.03) | .069 | .206 |
| Recessive model (AA vs CC + CA) | 18/213 | 16/214 | 0.89 (0.44–1.78) | .732 | 0.89 (0.44–1.80) | .741 | .852 |
| Allele C frequency | 312 | 332 | 0.80 (0.61–1.06) | .125 | 0.80 (0.60–1.06) | .125 | .374 |
| Allele A frequency | 150 | 128 |
TBX3 and TBX2 SNPs genotype and allele frequencies in healthy controls and in patients with different types of accessory AV connections.
| Genotype and allele | Controls (n = 231) | Accessory AV connections type (n = 230) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Concealed (n = 123) | Manifest (n = 107) | ||||||||
| No. | No. | OR (95% CI) | BH adjusted | No. | OR (95% CI) | BH adjusted | |||
| rs1061657 (T>C) | |||||||||
| TT | 79 | 32 | 1 (reference) | 26 | 1 (reference) | ||||
| TC | 124 | 67 | 1.33 (0.80–2.22) | .265 | .471 | 59 | 1.45 (0.84–2.48) | .182 | .170 |
| CC | 28 | 24 | 2.12 (1.07–4.19) |
| .471 | 22 | 2.39 (1.17–4.87) |
| .170 |
| Dominant model (TC + CC vs TT) | 152/79 | 91/32 | 1.48 (0.91–2.40) | .115 | .340 | 81/26 | 1.62 (0.96–2.72) | .069 | .412 |
| Recessive model (CC vs TT + CT) | 28/203 | 24/99 | 1.76 (0.97–3.19) | .064 | .460 | 22/85 | 1.88 (1.02–3.46) |
| .196 |
| Allele C | 180 | 115 | 1.38 (1.01–1.88) |
| .238 | 103 | 1.45 (1.05–2.02) |
| .150 |
| Allele T | 282 | 131 | 111 | ||||||
| rs8853 (T>C) | |||||||||
| TT | 70 | 47 | 1 (reference) | 47 | 1 (reference) | ||||
| TC | 127 | 64 | 0.75 (0.47–1.21) | .238 | .471 | 52 | 0.61 (0.37–1.00) |
| .170 |
| CC | 34 | 12 | 0.53 (0.25–1.12) | .095 | .471 | 8 | 0.35 (0.15–0.82) |
| .170 |
| Dominant model (TC + CC vs TT) | 161/70 | 76/47 | 0.70 (0.44–1.11) | .133 | .340 | 60/47 | 0.56 (0.35–0.89) |
| .179 |
| Recessive model (CC vs TT + CT) | 34/197 | 12/111 | 0.63 (0.31–1.26) | .189 | .460 | 8/99 | 0.47 (0.21–1.05) | .065 | .196 |
| Allele C | 195 | 88 | 0.76 (0.55–1.05) | .096 | .238 | 0.64 (0.45–0.90) |
| .119 | |
| Allele T | 267 | 158 | 146 | ||||||
| rs77412687(A>G) | |||||||||
| AA | 201 | 111 | 1 (reference) | 89 | 1 (reference) | ||||
| AG | 30 | 11 | NA | NA | NA | 15 | NA | NA | NA |
| GG | 0 | 1 | NA | NA | NA | 3 | NA | NA | NA |
| Dominant model (AG + GG vs AA) | 201/30 | 111/12 | 0.72 (0.36–1.47) | .372 | .447 | 89/18 | 1.36 (0.72–2.56) | .349 | .699 |
| Recessive model (GG vs AA + GA) | 0/231 | 1/122 | NA | NA | NA | 3/104 | NA | NA | NA |
| Allele G | 30 | 13 | 0.80 (0.41–1.57) | 0.522 | .625 | 21 | 1.57 (0.88–2.81) | .131 | .524 |
| Allele A | 432 | 233 | 193 | ||||||
| rs2242442 (G>A) | |||||||||
| GG | 72 | 38 | 1 (reference) | 28 | 1 (reference) | ||||
| GA | 107 | 64 | 1.13 (0.69–1.87) | .624 | .471 | 52 | 1.25 (0.72–2.16) | .425 | .808 |
| AA | 52 | 21 | 0.77 (0.40–1.45) | .413 | .471 | 27 | 1.34 (0.71–2.53) | .374 | .808 |
| Dominant model (GA + AA vs GG) | 159/72 | 85/38 | 1.01 (0.63–1.63) | .958 | .958 | 79/28 | 1.28 (0.77–2.13) | .349 | .699 |
| Recessive model (AA vs GG + GA) | 52/179 | 21/102 | 0.71 (0.40–1.24) | .230 | .460 | 27/80 | 1.16 (0.68–1.98) | .582 | .874 |
| Allele A | 211 | 106 | 0.90 (0.66–1.23) | .511 | .625 | 106 | 1.17 (0.84–1.62) | .350 | .620 |
| Allele G | 251 | 140 | 108 | ||||||
| rs75743672(C>A) | |||||||||
| CC | 99 | 62 | 1 (reference) | 56 | 1 (reference) | ||||
| CA | 114 | 53 | 0.74 (0.47–1.17) | .199 | .471 | 43 | 0.67 (0.41–1.08) | .098 | .455 |
| AA | 18 | 8 | 0.71 (0.29–1.73) | .451 | .471 | 8 | 0.79 (0.32–1.92) | .597 | .455 |
| Dominant model (CA + AA vs CC) | 132/99 | 61/62 | 0.74 (0.48–1.15) | .175 | .340 | 99/8 | 0.68 (0.43–1.08) | .105 | .418 |
| Recessive model (AA vs CC + CA) | 18/213 | 8/115 | 0.82 (0.35–1.95) | .659 | .810 | 8/99 | 0.96 (0.40–2.27) | .919 | .991 |
| Allele A | 150 | 69 | 0.81 (0.58–1.14) | .226 | .452 | 59 | 0.79 (0.55–1.13) | .201 | .601 |
| Allele C | 312 | 177 | 155 | ||||||
TBX3 and TBX2 SNPs genotype and allele frequencies in healthy controls and in patients with differentlocations of accessory AV connections.
| Genotype and allele | Controls (n = 231) | Accessory AV connections location (n = 230) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Left (n = 196) | Right (n = 34) | ||||||||
| No. | No. | OR (95% CI) | BH Adjusted | No. | OR (95% CI) | BH adjusted | |||
| rs1061657 (T>C) | |||||||||
| TT | 79 | 51 | 1 (reference) | 7 | 1 (reference) | ||||
| TC | 124 | 105 | 1.31 (0.85–2.03) | .224 | .112 | 21 | 1.91 (0.78–4.70) | .159 | .690 |
| CC | 28 | 40 | 2.21 (1.22–4.02) |
| .112 | 6 | 2.42 (0.75–7.81) | .140 | .690 |
| Dominant model (TC + CC vs TT) | 152/79 | 145/51 | 1.48 (0.97–2.25) | .068 | .205 | 27/7 | 2.15 (0.84–4.81) | .119 | .715 |
| Recessive model (CC vs TT + CT) | 28/203 | 40/156 | 1.86 (1.10–3.15) |
| .209 | 6/28 | 1.55 (0.59–4.08) | .372 | .565 |
| Allele C | 180 | 185 | 1.40 (1.07–1.84) |
|
| 33 | 1.48 (0.89–2.46) | .135 | .562 |
| Allele T | 282 | 207 | 35 | ||||||
| rs8853 (T>C) | |||||||||
| TT | 70 | 82 | 1 (reference) | 12 | 1 (reference) | ||||
| TC | 127 | 96 | 0.65 (0.43–0.98) |
| .112 | 20 | 0.92 (0.42–1.99) | .830 | .690 |
| CC | 34 | 18 | 0.45 (0.24–0.87) |
| .112 | 2 | 0.34 (0.07–1.62) | .177 | .690 |
| Dominant model (TC + CC vs TT) | 161/70 | 114/82 | 0.61 (0.41–0.90) |
| .161 | 22/12 | 0.80 (0.37–1.70) | .557 | .854 |
| Recessive model (CC vs TT + CT) | 34/197 | 18/178 | 0.59 (0.32–1.07) | .084 | .280 | 2/32 | 0.36 (0.08–1.58) | .177 | .531 |
| Allele C | 195 | 132 | 0.70 (0.53–0.92) |
|
| 24 | 0.75 (0.44–1.27) | .281 | .562 |
| Allele T | 267 | 260 | 44 | ||||||
| rs77412687(A>G) | |||||||||
| AA | 201 | 171 | 1 (reference) | 29 | 1 (reference) | ||||
| AG | 30 | 21 | NA | NA | NA | 5 | NA | NA | NA |
| GG | 0 | 4 | NA | NA | NA | 0 | NA | NA | NA |
| Dominant model (AG + GG vs AA) | 201/30 | 25/171 | 0.98 (0.56–1.73) | .943 | .943 | 29/5 | 1.16 (0.42–3.22) | .782 | .854 |
| Recessive model (GG vs AA + GA) | 0/231 | 4/192 | NA | NA | NA | 0/34 | NA | NA | NA |
| Allele G | 30 | 29 | 1.15 (0.68–1.95) | .604 | .725 | 5 | 1.14 (0.43–3.05) | .790 | .900 |
| Allele A | 432 | 363 | 63 | ||||||
| rs2242442 (G>A) | |||||||||
| GG | 72 | 58 | 1 (reference) | 8 | 1 (reference) | ||||
| GA | 107 | 100 | 1.16 (0.75–1.80) | .508 | .593 | 16 | 1.35 (0.55–3.31) | .518 | .690 |
| AA | 52 | 38 | 0.91 (0.53–1.56) | .725 | .593 | 10 | 1.73 (0.64–4.69) | .280 | .690 |
| Dominant model (GA + AA vs GG) | 159/72 | 138/58 | 1.09 (0.71–1.63) | .724 | .790 | 26/8 | 1.47 (0.64–3.41) | .367 | .749 |
| Recessive model (AA vs GG + GA) | 52/179 | 38/158 | 0.83 (0.52–1.32) | .431 | .615 | 10/24 | 1.43 (0.65–3.19) | .377 | .565 |
| Allele A | 211 | 176 | 0.97 (0.74–1.27) | .821 | .896 | 36 | 1.34 (0.80–2.23) | .263 | .562 |
| Allele G | 251 | 216 | 32 | ||||||
| rs75743672(C>A) | |||||||||
| CC | 99 | 103 | 1 (reference) | 15 | 1 (reference) | ||||
| CA | 114 | 78 | 0.67 (0.44–0.98) |
| .271 | 18 | 1.04 (0.50–2.18) | .913 | .690 |
| AA | 18 | 15 | 0.80 (0.38–1.68) | .556 | .271 | 1 | 0.37 (0.05–2.95) | .346 | .690 |
| Dominant model (CA + AA vs CC) | 132/99 | 93/103 | 0.68 (0.46–0.99) |
| .205 | 19/15 | 0.95 (0.46–1.96) | .890 | .890 |
| Recessive model (AA vs CC + CA) | 18/213 | 15/181 | 0.98 (0.48–2.00) | .957 | .957 | 1/33 | 0.36 (0.05–2.78) | .326 | .565 |
| Allele A | 150 | 108 | 0.79 (0.59–1.06) | .119 | .358 | 20 | 0.87 (0.50–1.51) | .615 | .819 |
| Allele C | 312 | 284 | 48 | ||||||
Figure 1.LD plot of the TBX3 rs1061657, rs77412687, rs8853, and rs2242442. Strong LD is represented by a higher percentage and a darker square. LD = linkage disequilibrium.
Haplotype analysis for TBX3 gene in 230 patients with accessory AV connections and 231 healthy controls.
| rs1061657 | rs77412687 | rs8853 | Healthy controls, haplotype frequency | Patients haplotype, frequency | OR (95% CI) | |
|---|---|---|---|---|---|---|
| C | A | T | 176 (0.595) | 216 (0.635) | 1 | |
| T | A | C | 191 (0.430) | 154 (0.347) | 0.65 (0.48–0.89) |
|
| T | A | T | 61 (0.168) | 54 (0.134) | 0.75 (0.50–1.13) | .168 |
| T | G | T | 30 (0.090) | 34 (0.093) | 1.04 (0.63–1.73) | .878 |