| Literature DB >> 35959365 |
Yong Qi1,2, Lele Ai1,2, Jun Jiao3, Junhu Wang1,2, Deping Wu4, Pengcheng Wang5, Guoyu Zhang6, Yong Qin6, Cheng Hu7, Ruichen Lv1,2, Nianhong Lu1,2, Changqiang Zhu1,2, Yingqing Mao1,2, Rui Qi8, Yuexi Li1,2, Weilong Tan1,2.
Abstract
Background: Spotted fever group Rickettsia (SFGR), containing various pathogenic Rickettsia spp., poses remarkable negative influences to public health by causing various severe or mild diseases. Information regarding prevalence of SFGR in ticks in Jiangsu province, Eastern China, is still limited and needs urgent investigations.Entities:
Keywords: Candidatus Rickettsia jingxinensis; Candidatus Rickettsia principis; Rickettsia heilongjiangensis; hedgehog; spotted fever group Rickettsia; tick
Mesh:
Substances:
Year: 2022 PMID: 35959365 PMCID: PMC9360493 DOI: 10.3389/fcimb.2022.954785
Source DB: PubMed Journal: Front Cell Infect Microbiol ISSN: 2235-2988 Impact factor: 6.073
Figure 1Sample collection sites and the observed tick hosts. (A) Locations of tick (yellow dot) and sera (red and yellow dots) collection sites; (B) a parasitic tick collected from an already dead hedgehog; (C) bovine hosts for tick collections; (D) a farmer bitten by a tick observed during our sample collection.
Primers used for PCR amplification.
| Target Gene | Primer Name | Sequence (5′-3′) |
|---|---|---|
|
| Rr190.70p | ATGGCGAATATTTCTCCAAAA |
| Rr190.701n | GTTCCGTTAATGGCAGCATCT | |
| Rr190.602n | AGTGCAGCATTCGCTCCCCCT | |
|
| CS2d | ATGACCAATGAAAATAATAAT |
| CSEndr | CTTATACTCTCTATGTACA | |
| RpCS.877p | GGGGACCTGCTCACGGCGG | |
| RpCS.1258n | ATTGCAAAAAGTACAGTGAACA | |
|
| S1 | TGATCCTGGCTCAGAACGAAC |
| S2 | TAAGGAGGTAATCCAGCCGC | |
| S3 | AACACATGCAAGTCGRACGG | |
| S4 | GGCTGCCTCTTGCGTTAGCT | |
| 16s771r | TAATCTTGCGACCGTACTCC; | |
| 16s565f | TCTTAGATATTAGGAGGAACACCG | |
|
| D1f | ATGAGTAAAGACGGTAACCT |
| RrD2685R | TTCAGTAGAAGATTTAGTACCAAAT | |
| RrD1826R | TCTAAATKCTGCTGMATCAAT | |
| NewRrD1713F | CTCTGAATTAAGCAATGCGG | |
| RrD749F | TGGTAGCATTAAAAGCTGATGG | |
| D3069R | TCAGCGTTGTGGAGGGGAAG | |
| D3072R | TGATCAGCGTTGTGGAGGGG | |
| D1f | ATGAGTAAAGACGGTAACCT | |
| D928r | AAGCTATTGCGTCATCTCCG | |
| D2338f | GATGCAGCGAGTGAGGCAGC | |
| T5DR1 | CTGATAAAGCTGTAGCTGCATTA | |
| RrD2685R | TTCAGTAGAAGATTTAGTACCAAAT | |
|
| RompB11F | ACCATAGTAGCMAGTTTTGCAG |
| RompB2553R | GAATTTTCAAAAGCAATYGTATCAGT | |
| RAK1452R | SGTTAACTTKACCGYTTATAACTGT | |
| RAK1009F | ACATKGTTATACARAGTGYTAATGC | |
| RompB2553R | GAATTTTCAAAAGCAATYGTATCAGT | |
| RompB2409F | CCGTAACATTAAACAAACAAGCTG | |
| RompB4887R | AGAGTACCTTGATGTGCRGTATAYT | |
| RompB3637R | GAAACGATTACTTCCGGTTACA | |
| NewRompB3521F | GATAATGCCGATGCAAATTGCAG | |
| RompB3521F | GATAATGCCAATGCAAATTTCAG | |
| 120-807R | CCTTTTAGATTACCGCCTAA | |
| 120-607F | AATATCGCTGACGGTCAAGGT | |
| RompB1902R | CCGTCATTTCCAATAACTAACTC | |
| RR1595F | GCCGGAGTTGTCCAATTATCA | |
| 120-2988R | CCGGCTATACCGCCTGTAGT | |
| 120-2788F | AAACAATAATCAAGGTACTGT | |
| RompB4224F | ACCAAGATTATAAGAAAGGTGATAA | |
| 120-4346R | CGAAGAAGTAACGCTGACTT |
Figure 2Haemaphysalis spp. and Rhipicephalus microplus ticks collected in this study.
Identity rates of the genes from the identified strains with various validated or unvalidated Rickettsia spp.
| Strains | Gene |
|
|
|
|
|
|---|---|---|---|---|---|---|
| Huaian-HF | Size | 1,290 bp | 1,331 bp | 575 bp | 4,807 bp | 3,035 bp |
| Highest Identity Rate | 98.84% to | 99.32% to | 95.37% to | 94.82% | 97.79% | |
| Huaian-HFL | Size | 1,289 bp | 1,331 bp | 632 bp | 4,856 bp | 2,993 bp |
| Highest Identity Rate | 99.77% to | 99.92% and 100% to | 98.10% to | 99.03% to | 99.63% to | |
| Huaian-RM | Size | 1,260 bp | 1,331 bp | 523 bp | 4,842 bp | 2,660 bp |
| Highest Identity Rate | 99.60% to | 99.70% to | 94.87% to | 98% to | 98.5% to | |
| Novel species Criteria | Identity Rates ( | <99.9% | <99.8 | <98.8 | <99.2 | <99.3 |
Figure 3Phylogenetic tree of Rickettsia spp. based on a concatenated sequence of gltA, rrs, ompA, ompB, and sca4 gene sequences. The phylogenetic tree was generated with MEGA 7.0 software using the maximum likelihood method with 1,000 replicates for bootstrap testing. Bootstrap values > 50% are shown. The scale bar indicates nucleotide substitutions per site. The GenBank accession numbers of the reference sequences are indicated. The newly obtained sequences are indicated with black dots.
Figure 4Box and whisker plot of OD450 values of the serum samples detected using ELISA. The box represents 25th to 75th percentile and the mean value (line in the middle of each box), and whisker shows the minimum and maximum values. The sampling locations were indicated. n.s., not significant.