| Literature DB >> 35957832 |
Yongqiang Ma1,2, Guangshun Chen1,2,3, Junfang Yi1, Qiang Li1,2,3, Zhi Tan4, Wenling Fan4, Xiaohua Luo1, Zhiyong He1, Zhongzhou Si1,2,3, Jiequn Li1,2,3.
Abstract
Metabolic-associated fatty liver disease (MAFLD) affects approximately a quarter of the global population. Identification of the key genes and pathways involved in hepatic lipid metabolism is of the utmost importance for the diagnosis, treatment, and prevention of MAFLD. In this study, differentially expressed genes were identified through whole-genome transcriptional analysis of liver tissue from MAFLD patients and healthy controls, and a series of lipid metabolism-related molecules and pathways were obtained through pathway analysis. Subsequently, we focused on Iroquois homeobox protein 3 (IRX3), one of 13 transcription factors that were screened from the 331 differentially expressed genes. The transcription factor IRX3 was significantly decreased in the liver tissue of patients with MAFLD when compared with healthy controls. Pearson's correlation analysis showed that the expression levels of IRX3 in liver tissue were negatively correlated with serum total cholesterol, triglycerides, low-density lipoprotein cholesterol, and uric acid levels. The overexpression and interference of IRX3 induced the increased and decreased lipid droplet accumulation in vitro, respectively. Moreover, interference of IRX3 expression increased mitochondrial fragmentation and reduced the activity of the mitochondrial respiratory chain complex IV. In summary, the study demonstrated that IRX3 regulated hepatic lipid metabolism of MAFLD, and also revealed the effect of IRX3 on mitochondria might be an important mechanism by which IRX3 regulated hepatic lipid metabolism of MAFLD.Entities:
Keywords: IRX3; MAFLD; differentially expressed genes; lipid metabolism; mitochondrion
Mesh:
Substances:
Year: 2022 PMID: 35957832 PMCID: PMC9360787 DOI: 10.3389/fendo.2022.895593
Source DB: PubMed Journal: Front Endocrinol (Lausanne) ISSN: 1664-2392 Impact factor: 6.055
Figure 1Comprehensive analysis of differentially expressed genes in liver tissue between MAFLD patients and controls. (A) Pearson’s correlation heat map of 331 differentially expressed genes. The darker blue color indicated a lower correlation and greater variability between the two individuals. (B) Bar graph of the top 20 enriched biological processes and pathways related to MAFLD. (C) The four significant MCODE components from the PPI network. The dots represented proteins, and the lines between the dots represented interactions between proteins.
Figure 2The transcription factors were screened from differentially expressed genes. (A) Heatmap of transcription factors from all samples, the darker of orange color indicated the higher the gene expression. (B) Action view of genes related to the FTO obesity variant mechanism pathway. The colors corresponded to interactions according to the legend (bottom right).
Figure 3The expression of IRX3 was decreased in the liver tissue of MAFLD patients. (A) Hemotoxylin and eosin (H&E) staining and immunohistochemistry assay for IRX3 expression in liver tissues of MAFLD patients and controls. (B) Statistical results of the relative expression of IRX3 in liver tissue samples by immunohistochemical staining (n=7, 2–3 slides/patient, ***p<0.001). (C) The mRNA expression levels of IRX3 in liver tissue samples (**p<0.01).
Figure 4Pearson’s correlation analysis between IRX3 expression levels and clinical characteristics of lipid metabolism. (A–D) Correlation analysis between IRX3 expression and serum TG, TC, LDL-C and UA levels. TC, total cholesterol; TG, triglycerides; LDL-C, low-density lipoprotein cholesterol; UA, uric acid.
Figure 5The effect of IRX3 on lipid droplet accumulation in vitro. (A) HepG2 cells were transfected with the IRX3-Flag (OE IRX3, Red) and vector plasmid (NC). IRX3-Flag-positive cells were marked by white dashed boxes. (B) The number of lipid droplets per cell shown in A was quantified. (C) HepG2 cells were transfected with IRX3 siRNA and control siRNA. (D) Quantification of the number of lipid droplets per cell in (C) BODIPY staining for lipid droplets (Green). DAPI staining for cell nuclei (blue). Bar=10 µm (**p <0.01, ***p <0.001).
Figure 6The relationship between IRX3 and genes related to mitochondrial thermogenesis. (A) The mRNA expression levels of thermogenesis-related genes in liver tissues of MAFLD patients and controls (**p <0.01, ***p <0.001). (B) Correlation analysis between the expression levels of IRX3 and IRF4. (C) Correlation analysis between the expression levels of IRX3 and ADRB2.
Figure 7The effects of IRX3 on mitochondrial function. (A) HepG2 cells were transfected with IRX3 siRNA and control siRNA, mitochondria were stained red by TOM20. Bar=5µm. (B) Quantification of the number of cells with fragmented mitochondria. (C) The activity of the mitochondrial complexes was detected in cells transfected with IRX3 siRNA or control. Citrate synthase was used as a mitochondrial control. **p< 0.01.