| Literature DB >> 35956147 |
Tomasz Iwanicki1, Joanna Iwanicka1, Anna Balcerzyk-Matić1, Tomasz Nowak1, Katarzyna Mizia-Stec2, Paweł Bańka2, Artur Filipecki2, Jolanta Krauze3, Alicja Jarosz1, Sylwia Górczyńska-Kosiorz4, Anna Ochalska-Tyka5, Iwona Żak1, Paweł Niemiec1.
Abstract
BACKGROUND: The present study aimed to determine whether the polymorphisms of the 11q23.3 locus affect the risk and mortality of coronary artery disease in 5-year and 10-year observations.Entities:
Keywords: 11q23.3 region; biological interactions; coronary artery disease; lipid abnormalities; mortality; single nucleotide polymorphism
Year: 2022 PMID: 35956147 PMCID: PMC9369758 DOI: 10.3390/jcm11154532
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.964
Figure 1Location of the rs3741298, rs10750097, and rs1729410 SNPs on chromosome 11, at locus 11q23.3 (the figure made with the LDmatrix Tool [11] was adopted).
Clinical and biochemical characteristics of coronary artery disease (CAD) patients and controls.
| Characteristics | CAD | Controls | OR * |
|
|---|---|---|---|---|
| Age (years), median (QD) | 45.00 (4.00) | 43.00 (4.00) | - | 0.06 |
| Male gender, | 165 (66.53) | 174 (71.60) | 0.79 (0.54–1.16) | 0.22 |
| TC (mmol/L), median (QD) | 5.71 (0.97) | 4.92 (0.74) | - | <10−6 |
| HDL (mmol/L), median (QD) | 1.04 (0.14) | 1.33 (0.39) | - | <10−6 |
| LDL (mmol/L), median (QD) | 3.81 (0.84) | 2.80 (0.77) | - | <10−6 |
| TG (mmol/L), median (QD) | 1.73 (0.52) | 1.29 (0.40) | - | <10−6 |
| BMI, mean (SD) | 26.60 (2.76) | 25.40 (2.27) | - | 0.02 |
| Cigarette smoking, | 140 (56.45) | 66 (27.16) | 3.48 (2.38–5.07) | <10−7 |
CAD, coronary artery disease; CI, confidence interval; OR, odds ratio; QD, quartile deviation; TC, total cholesterol; HDL, high-density lipoprotein; LDL, low-density lipoprotein; TG, triglycerides; BMI, body mass index; SD, standard deviation. * Univariate analysis.
R2 values of the linkage disequilibrium from the CEU population (based on the results obtained with the LDlink tool [11]).
| SNPs | rs3741298 | rs10750097 | rs1729410 |
|---|---|---|---|
| rs3741298 | 1.000 | 0.314 | 0.006 |
| rs10750097 | 0.314 | 1.000 | 0.000 |
| rs1729410 | 0.006 | 0.000 | 1.000 |
Genotype and allele frequencies of analyzed polymorphisms in patients (CAD) and controls.
| Genotype/ | CAD | Controls | Inheritance Model | OR (95% CI) |
|
|---|---|---|---|---|---|
|
| |||||
| GG | 57 (25.00) | 56 (23.63) | Dominant, vs. GC + CC | 1.07 (0.70–1.65) | 0.73 |
| GC | 121 (53.07) | 109 (45.99) | Additive, vs. GG | 1.09 (0.69–1.71) | 0.71 |
| CC | 50 (21.93) | 72 (30.38) | Additive, vs. GG | 0.68 (0.41–1.14) | 0.15 |
| GC + GG | 178 (78.07) | 165 (69.62) | Recessive, vs. CC | 1.55 (1.02–2.36) | 0.04 * |
| C | 221 (48.46) | 253 (53.38) | - | 0.82 (0.64–1.06) | 0.13 |
| G | 235 (51.54) | 221 (46.62) | - | 1.21 (0.94–1.57) | 0.13 |
|
| |||||
| AA | 128 (56.64) | 143 (63.84) | Dominant, vs. AG + GG | 0.74 (0.51–1.08) | 0.12 |
| AG | 84 (37.17) | 68 (30.36) | Additive, vs. AA | 1.38 (0.93–2.06) | 0.11 |
| GG | 14 (6.19) | 13 (5.80) | Additive, vs. AA | 1.20 (0.54–2.65) | 0.65 |
| AG + AA | 212 (93.80) | 211 (94.20) | Recessive, vs. GG | 0.93 (0.43–2.03) | 0.86 |
| G | 112 (24.78) | 94 (20.98) | - | 1.24 (0.91–1.70) | 0.18 |
| A | 340 (75.22) | 354 (79.02) | - | 0.81 (0.59–1.10) | 0.18 |
|
| |||||
| TT | 120 (54.05) | 145 (61.44) | Dominant, vs. TC + CC | 0.74 (0.51–1.07) | 0.10 |
| TC | 91 (40.99) | 78 (33.05) | Additive, vs. TT | 1.41 (0.96–2.08) | 0.08 |
| CC | 11 (4.96) | 13 (5.51) | Additive, vs. TT | 1.02 (0.44–2.36) | 0.96 |
| TC + TT | 211 (95.04) | 223 (94.50) | Recessive, vs. CC | 1.12 (0.49–2.55) | 0.79 |
| C | 113 (25.45) | 104 (22.03) | - | 1.21 (0.89–1.64) | 0.23 |
| T | 331 (74.55) | 368 (77.97) | - | 0.83 (0.61–1.12) | 0.23 |
CAD, coronary artery disease; CI, confidence interval; OR, odds ratio. * statistically significant difference.
Interaction analysis between GG homozygosity of the rs10750097 polymorphism and cigarette smoking.
| GG Genotype, rs10750097 | Cigarette Smoking | CAD | Controls | OR | 95% CI | |
|---|---|---|---|---|---|---|
|
|
| Lower Limit | Upper Limit | |||
| 0 | 0 | 85 | 151 | 1 | - | - |
| 0 | 1 | 123 | 59 | 3.70 | 2.46 | 5.57 |
| 1 | 0 | 2 | 11 | 0.32 | 0.07 | 1.49 |
| 1 | 1 | 12 | 2 | 10.66 | 2.33 | 48.75 |
CAD, coronary artery disease; CI, confidence interval; OR, odds ratio.
Interaction analysis between carriers of the G allele of the rs1729410 polymorphism and over-normative BMI values.
| G Allele, rs1729410 | BMI ≥ 25 | CAD | Controls | OR | 95% CI | |
|---|---|---|---|---|---|---|
|
|
| Lower Limit | Upper Limit | |||
| 0 | 0 | 25 | 37 | 1 | - | - |
| 0 | 1 | 17 | 34 | 0.74 | 0.34 | 1.60 |
| 1 | 0 | 67 | 75 | 1.32 | 0.72 | 2.42 |
| 1 | 1 | 99 | 87 | 1.68 | 0.94 | 3.02 |
BMI, body mass index; CAD, coronary artery disease; CI, confidence interval; OR, odds ratio.
Interaction analysis between GG homozygosity of the rs1729410 polymorphism and risk of over-normative lipid values.
| GG Genotype, rs1729410 | TC ≥ 5 mmol/L | CAD | Controls | OR | 95% CI | |
|---|---|---|---|---|---|---|
|
|
| Lower Limit | Upper Limit | |||
| 0 | 0 | 57 | 98 | 1 | - | - |
| 0 | 1 | 100 | 71 | 2.19 | 1.43 | 3.35 |
| 1 | 0 | 7 | 29 | 0.42 | 0.17 | 1.01 |
| 1 | 1 | 46 | 27 | 2.95 | 1.67 | 5.23 |
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| 0 | 0 | 41 | 42 | 1 | - | - |
| 0 | 1 | 114 | 92 | 1.27 | 0.76 | 2.11 |
| 1 | 0 | 4 | 32 | 0.13 | 0.04 | 0.39 |
| 1 | 1 | 47 | 24 | 2.01 | 1.04 | 3.86 |
TC, serum total cholesterol concentration; LDL, serum low-density lipoproteins concentration; CAD, coronary artery disease; CI, confidence interval; OR, odds ratio.
Figure 2Kaplan–Meier survival curves for CAD patients by rs10750097 (A > G) polymorphism: (A) 5-year survival in additive model; (B) 10-year survival in additive model; (C) 5-year survival in a recessive model; (D) 10-year survival in a recessive model.