| Literature DB >> 35954350 |
Kwok Tai Chui1, Brij B Gupta2,3,4,5, Hao Ran Chi6, Varsha Arya7, Wadee Alhalabi4, Miguel Torres Ruiz8, Chien-Wen Shen9.
Abstract
BACKGROUND: Prostate cancer is the 4th most common type of cancer. To reduce the workload of medical personnel in the medical diagnosis of prostate cancer and increase the diagnostic accuracy in noisy images, a deep learning model is desired for prostate cancer detection.Entities:
Keywords: automatic diagnosis; convolutional neural network; deep learning; image denoising; prostate cancer; transfer learning
Year: 2022 PMID: 35954350 PMCID: PMC9367349 DOI: 10.3390/cancers14153687
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.575
Summary of the benchmark datasets.
| Dataset | ||||
|---|---|---|---|---|
| Details | NaF Prostate [ | TCGA-PRAD [ | Prostate-3T [ | PROSTATE-DIAGNOSIS [ |
| Data type | PET/CT | MR, PT, CT | MR (T2W) | MR (T1, T2, and DCE sequences) |
| Size of the dataset (GB) | 12.9 | 3.74 | 0.277 | 5.6 |
| The number of participants | 9 | 14 | 64 | 92 |
| The number of studies | 44 | 20 | 64 | 92 |
| The number of series | 214 | 207 | 64 | 368 |
| The number of images | 64,535 | 16,790 | 1258 | 32,537 |
Figure 1Architecture of the MSDCNN.
Figure 2Examples of MRI images (a) original; (b) with Gaussian noise; (c) after applying residual learning.
Details of the target models.
| Model | Source Model | Target Model |
|---|---|---|
| TL-MSDCNN [12],[13] | NaF Prostate [ | TCGA-PRAD [ |
| TL-MSDCNN [12],[14] | NaF Prostate [ | Prostate-3T [ |
| TL-MSDCNN [12],[15] | NaF Prostate [ | PROSTATE-DIAGNOSIS [ |
| TL-MSDCNN [13],[12] | TCGA-PRAD [ | NaF Prostate [ |
| TL-MSDCNN [13],[14] | TCGA-PRAD [ | Prostate-3T [ |
| TL-MSDCNN [13],[15] | TCGA-PRAD [ | PROSTATE-DIAGNOSIS [ |
| TL-MSDCNN [14],[12] | Prostate-3T [ | NaF Prostate [ |
| TL-MSDCNN [14],[13] | Prostate-3T [ | TCGA-PRAD [ |
| TL-MSDCNN [14],[15] | Prostate-3T [ | PROSTATE-DIAGNOSIS [ |
| TL-MSDCNN [15],[12] | PROSTATE-DIAGNOSIS [ | NaF Prostate [ |
| TL-MSDCNN [15],[13] | PROSTATE-DIAGNOSIS [ | TCGA-PRAD [ |
| TL-MSDCNN [15],[14] | PROSTATE-DIAGNOSIS [ | Prostate-3T [ |
Figure 3Architecture of the transfer learning with MCDCNN.
Performance of the 12 target models using TL-MSDCNN with and without Gaussian noise insertion.
| With/Without Gaussian Noise Insertion | |||
|---|---|---|---|
| Model | Average Sensitivity (%) | Average Specificity (%) | Average Accuracy (%) |
| TL-MSDCNN [12],[13] | 94.6/94.9 | 95.3/95.7 | 94.9/95.2 |
| TL-MSDCNN [12],[14] | 97.5/97.7 | 98.4/98.7 | 98.1/98.3 |
| TL-MSDCNN [12],[15] | 95.3/95.6 | 94.7/95.0 | 94.9/95.2 |
| TL-MSDCNN [13],[12] | 95.7/95.9 | 96.5/96.8 | 96.0/96.3 |
| TL-MSDCNN [13],[14] | 98.6/98.8 | 99.2/99.4 | 98.9/99.1 |
| TL-MSDCNN [13],[15] | 96.9/97.3 | 96.2/96.5 | 96.6/96.9 |
| TL-MSDCNN [14],[12] | 94.9/95.3 | 95.6/95.9 | 95.2/95.5 |
| TL-MSDCNN [14],[13] | 93.8/94.2 | 94.5/94.9 | 94.1/94.5 |
| TL-MSDCNN [14],[15] | 94.2/94.7 | 93.6/94.0 | 93.9/94.3 |
| TL-MSDCNN [15],[12] | 96.8/97.1 | 97.7/98.0 | 97.1/97.4 |
| TL-MSDCNN [15],[13] | 95.4/95.8 | 96.3/96.7 | 95.8/96.2 |
| TL-MSDCNN [15],[14] | 98.9/99.1 | 99.6/99.7 | 99.2/99.3 |
Performance comparison between TL-MSDCNN and existing works.
| Dataset | Work | Type of Cross-Validation | Average Sensitivity (%) | Average Specificity (%) | Average Accuracy (%) |
|---|---|---|---|---|---|
| NaF Prostate [ | [ | No | 88 | 89 | N/A |
| [ | 5-fold | 88 | N/A | N/A | |
| TL-MSDCNN [15],[12] | 5-fold | 96.8 | 97.7 | 97.1 | |
| TCGA-PRAD [ | [ | No | N/A | N/A | 77 |
| [ | 5-fold | 81.5 | 82 | 81.8 | |
| TL-MSDCNN [15],[13] | 5-fold | 95.4 | 96.3 | 95.8 | |
| Prostate-3T [ | [ | No | 88.4 | 93.4 | 92.0 |
| [ | No | 88.7 | 99.1 | 98.7 | |
| TL-MSDCNN [15],[14] | 5-fold | 98.9 | 99.6 | 99.2 | |
| PROSTATE-DIAGNOSIS [ | [ | No | N/A | N/A | 79 |
| [ | No | N/A | N/A | 71 | |
| TL-MSDCNN [13],[15] | 5-fold | 96.9 | 96.2 | 96.6 |
Performance of the 12 target models using TL-MSDCNN with and without image denoising algorithm when Gaussian noise is considered.
| With/Without Image Denoising Algorithm | |||
|---|---|---|---|
| Model | Average Sensitivity (%) | Average Specificity (%) | Average Accuracy (%) |
| TL-MSDCNN [12],[13] | 94.6/92.3 | 95.3/92.8 | 94.9/92.5 |
| TL-MSDCNN [12],[14] | 97.5/95.6 | 98.4/96.4 | 98.1/96.1 |
| TL-MSDCNN [12],[15] | 95.3/92.1 | 94.7/91.4 | 94.9/91.7 |
| TL-MSDCNN [13],[12] | 95.7/93.1 | 96.5/94.1 | 96.0/93.4 |
| TL-MSDCNN [13],[14] | 98.6/96.8 | 99.2/97.5 | 98.9/97.2 |
| TL-MSDCNN [13],[15] | 96.9/94.0 | 96.2/93.4 | 96.6/93.8 |
| TL-MSDCNN [14],[12] | 94.9/92.1 | 95.6/92.9 | 95.2/92.4 |
| TL-MSDCNN [14],[13] | 93.8/91.5 | 94.5/92.0 | 94.1/91.7 |
| TL-MSDCNN [14],[15] | 94.2/90.5 | 93.6/90.0 | 93.9/90.3 |
| TL-MSDCNN [15],[12] | 96.8/94.3 | 97.7/95.2 | 97.1/94.6 |
| TL-MSDCNN [15],[13] | 95.4/93.0 | 96.3/93.8 | 95.8/93.3 |
| TL-MSDCNN [15],[14] | 98.9/96.2 | 99.6/96.8 | 99.2/96.5 |
Performance of the 12 target models using TL-MSDCNN when Gaussian noise and Gaussian smoothing are considered.
| With Gaussian Noise/With Gaussian Smoothing | |||
|---|---|---|---|
| Model | Average Sensitivity (%) | Average Specificity (%) | Average Accuracy (%) |
| TL-MSDCNN [12],[13] | 94.6/94.1 | 95.3/94.6 | 94.9/94.3 |
| TL-MSDCNN [12],[14] | 97.5/97.1 | 98.4/97.9 | 98.1/97.5 |
| TL-MSDCNN [12],[15] | 95.3/94.6 | 94.7/93.9 | 94.9/94.1 |
| TL-MSDCNN [13],[12] | 95.7/95.1 | 96.5/95.8 | 96.0/95.4 |
| TL-MSDCNN [13],[14] | 98.6/97.7 | 99.2/98.4 | 98.9/98.0 |
| TL-MSDCNN [13],[15] | 96.9/96.1 | 96.2/95.5 | 96.6/95.8 |
| TL-MSDCNN [14],[12] | 94.9/94.0 | 95.6/94.5 | 95.2/94.2 |
| TL-MSDCNN [14],[13] | 93.8/93.0 | 94.5/93.7 | 94.1/93.3 |
| TL-MSDCNN [14],[15] | 94.2/93.7 | 93.6/93.2 | 93.9/93.5 |
| TL-MSDCNN [15],[12] | 96.8/96.3 | 97.7/97.1 | 97.1/96.6 |
| TL-MSDCNN [15],[13] | 95.4/94.7 | 96.3/95.7 | 95.8/95.1 |
| TL-MSDCNN [15],[14] | 98.9/98.1 | 99.6/98.8 | 99.2/98.4 |
Performance of the 12 target models using TL-MSDCNN with and without multi-scale scheme.
| With/Without Multi-Scale Scheme | |||
|---|---|---|---|
| Model | Average Sensitivity (%) | Average Specificity (%) | Average Accuracy (%) |
| TL-MSDCNN [12],[13] | 94.6/91.3 | 95.3/92.5 | 94.9/91.8 |
| TL-MSDCNN [12],[14] | 97.5/94.7 | 98.4/95.6 | 98.1/95.2 |
| TL-MSDCNN [12],[15] | 95.3/93.6 | 94.7/92.4 | 94.9/92.8 |
| TL-MSDCNN [13],[12] | 95.7/92.4 | 96.5/93.3 | 96.0/92.7 |
| TL-MSDCNN [13],[14] | 98.6/95.5 | 99.2/96.0 | 98.9/95.8 |
| TL-MSDCNN [13],[15] | 96.9/93.8 | 96.2/93.2 | 96.6/93.5 |
| TL-MSDCNN [14],[12] | 94.9/91.5 | 95.6/93.2 | 95.2/92.3 |
| TL-MSDCNN [14],[13] | 93.8/90.2 | 94.5/91.0 | 94.1/90.6 |
| TL-MSDCNN [14],[15] | 94.2/91.2 | 93.6/90.3 | 93.9/90.7 |
| TL-MSDCNN [15],[12] | 96.8/93.1 | 97.7/94.3 | 97.1/93.5 |
| TL-MSDCNN [15],[13] | 95.4/92.5 | 96.3/93.5 | 95.8/92.9 |
| TL-MSDCNN [15],[14] | 98.9/95.3 | 99.6/96.8 | 99.2/95.9 |
Performance of the 12 target models using TL-MSDCNN with and without transfer learning.
| With/Without Transfer Learning | |||
|---|---|---|---|
| Model | Average Sensitivity (%) | Average Specificity (%) | Average Accuracy (%) |
| TL-MSDCNN [12],[13] | 94.6/91.8 | 95.3/92.2 | 94.9/92 |
| TL-MSDCNN [12],[14] | 97.5/94.6 | 98.4/95.6 | 98.1/95.2 |
| TL-MSDCNN [12],[15] | 95.3/92.1 | 94.7/91.4 | 94.9/91.7 |
| TL-MSDCNN [13],[12] | 95.7/92.8 | 96.5/93.6 | 96.0/93.2 |
| TL-MSDCNN [13],[14] | 98.6/95.9 | 99.2/96.5 | 98.9/96.2 |
| TL-MSDCNN [13],[15] | 96.9/93.6 | 96.2/92.8 | 96.6/93.1 |
| TL-MSDCNN [14],[12] | 94.9/92.3 | 95.6/92.9 | 95.2/92.5 |
| TL-MSDCNN [14],[13] | 93.8/90.7 | 94.5/91.4 | 94.1/90.9 |
| TL-MSDCNN [14],[15] | 94.2/91.6 | 93.6/90.9 | 93.9/91.2 |
| TL-MSDCNN [15],[12] | 96.8/93.6 | 97.7/94.2 | 97.1/93.8 |
| TL-MSDCNN [15],[13] | 95.4/92.6 | 96.3/93.3 | 95.8/92.9 |
| TL-MSDCNN [15],[14] | 98.9/96.3 | 99.6/97.1 | 99.2/96.7 |