Literature DB >> 35951295

Fiber Diffraction and Small-Angle Scattering for Structural Investigation of Bacterial Amyloids.

Tatsuhito Matsuo1,2,3, Judith Peters4,5,6.   

Abstract

X-ray/neutron fiber diffraction and small-angle X-ray/neutron scattering are widely used to investigate the molecular structure of fibrous proteins, including amyloid fibrils. However, there is sometimes confusion between these two techniques despite the fact that sample conditions and the content of the information obtained are not the same. In this brief chapter, we present the differences in sample conditions between these two methods, and their effects on experimentally obtained diffraction or scattering patterns, emphasizing the degree of disorder in the samples.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Bacterial amyloid; Neutron fiber diffraction; Small-angle X-ray scattering; Small-angle neutron scattering; Structural analysis; X-ray fiber diffraction

Mesh:

Substances:

Year:  2022        PMID: 35951295     DOI: 10.1007/978-1-0716-2529-3_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  X-ray fibre diffraction studies of amyloid fibrils.

Authors:  Kyle L Morris; Louise C Serpell
Journal:  Methods Mol Biol       Date:  2012

2.  Atomic structures of amyloid cross-beta spines reveal varied steric zippers.

Authors:  Michael R Sawaya; Shilpa Sambashivan; Rebecca Nelson; Magdalena I Ivanova; Stuart A Sievers; Marcin I Apostol; Michael J Thompson; Melinda Balbirnie; Jed J W Wiltzius; Heather T McFarlane; Anders Ø Madsen; Christian Riekel; David Eisenberg
Journal:  Nature       Date:  2007-04-29       Impact factor: 49.962

3.  Quick shear-flow alignment of biological filaments for X-ray fiber diffraction facilitated by methylcellulose.

Authors:  Takaaki Sugiyama; Daisuke Miyashiro; Daisuke Takao; Hiroyuki Iwamoto; Yasunobu Sugimoto; Katsuzo Wakabayashi; Shinji Kamimura
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

4.  Structural changes in the muscle thin filament during contractions caused by single and double electrical pulses.

Authors:  Tatsuhito Matsuo; Naoto Yagi
Journal:  J Mol Biol       Date:  2008-09-16       Impact factor: 5.469

Review 5.  Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls.

Authors:  David A Jacques; Jill Trewhella
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

6.  Revised role for Hfq bacterial regulator on DNA topology.

Authors:  Antoine Malabirade; David Partouche; Omar El Hamoui; Florian Turbant; Frédéric Geinguenaud; Pierre Recouvreux; Thomas Bizien; Florent Busi; Frank Wien; Véronique Arluison
Journal:  Sci Rep       Date:  2018-11-14       Impact factor: 4.379

7.  The nature of the globular- to fibrous-actin transition.

Authors:  Toshiro Oda; Mitsusada Iwasa; Tomoki Aihara; Yuichiro Maéda; Akihiro Narita
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

8.  Atomic models of de novo designed cc beta-Met amyloid-like fibrils.

Authors:  Michel O Steinmetz; Zrinka Gattin; Rene Verel; Barbara Ciani; Thusnelda Stromer; Janelle M Green; Peter Tittmann; Clemens Schulze-Briese; Heinz Gross; Wilfred F van Gunsteren; Beat H Meier; Louise C Serpell; Shirley A Müller; Richard A Kammerer
Journal:  J Mol Biol       Date:  2007-12-05       Impact factor: 5.469

9.  An X-ray diffraction study on a single rod outer segment from frog retina.

Authors:  Naoto Yagi; Tatsuhito Matsuo; Noboru Ohta
Journal:  J Synchrotron Radiat       Date:  2012-05-18       Impact factor: 2.616

10.  X-ray fiber diffraction modeling of structural changes of the thin filament upon activation of live vertebrate skeletal muscles.

Authors:  Tatsuhito Matsuo; Yutaka Ueno; Yasunori Takezawa; Yasunobu Sugimoto; Toshiro Oda; Katsuzo Wakabayashi
Journal:  Biophysics (Nagoya-shi)       Date:  2010-02-23
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