| Literature DB >> 35948930 |
Shahram Parvin1,2, Alireza Shahriary1, Hossein Aghamollaei1, B Fatemeh Nobakht M Gh1, Hasan Bagheri1, Mostafa Ghanei1, Seyed-Hashem Daryabari1, Khosrow Jadidi1, Masoud Arabfard3.
Abstract
Understanding the molecular and cellular mechanisms involved in the pathogenesis of ocular injured induced by mustard gas can help better identify complications and discover appropriate therapies. This study aimed to analyze the proteomics of tears of chemical warfare victims with mustard gas ocular injuries and compare it with healthy individuals. In this case-control research, 10 mustard gas victims with long-term ocular difficulties (Chronic) were included in the patient group, while 10 healthy persons who were age and sex matched to the patients were included in the control group. Schirmer strips were used to collect the tears of the participants. Proteomics experiments were performed using the high-efficiency TMT10X method to evaluate the tear protein profile, and statistical bioinformatics methods were used to identify the differently expressed proteins. 24 proteins had different expressions between the two groups. Among these 24 proteins, 8 proteins had increased expression in veterans' tears, while the remaining 16 proteins had decreased expression. Reactome pathways were used to look at proteins with various expressions, and 13 proteins were found to be engaged in the immune system, 9 of which were effective in the innate immune system, and 5 proteins were effective in the complement cascade. Ocular mustard gas exposure may cause a compromised immune system on the eye's surface, exposing the cornea to external and endogenous infections, and eventually causing corneal opacity and reduced vision.Entities:
Keywords: Ocular complications; Proteomics; Sulfur mustard; Tear
Year: 2022 PMID: 35948930 PMCID: PMC9364592 DOI: 10.1186/s12953-022-00195-1
Source DB: PubMed Journal: Proteome Sci ISSN: 1477-5956 Impact factor: 2.882
The TMT labelling scheme used for each individual tear sample
| TMT Labels (tear samples) | TMT-1 | TMT-2 |
|---|---|---|
Fig. 2Heatmap plot for visualize hierarchical clustering
Fig. 3Volcano plot of differentially abundant proteins in the tear
Fig. 1Density plot (left panel) and Box plots (right panel) of post-normalized data showing variability in the TMT-MS data tear
Characteristics of differentially expressed proteins between cases and controls
| Accession ID | Protein Name | Gene name | Fold change | |
|---|---|---|---|---|
| Q07654 | Trefoil factor 3 | TFF3 | 1.752 | 0.001 |
| Q8TAX7 | Mucin-7 | MUC7 | 1.568 | 0.001 |
| Q08J23 | RNA cytosine C(5)-methyltransferase | NSUN2 | 1.564 | 0.006 |
| P52298 | Nuclear cap-binding protein subunit 2 | NCBP2 | 1.528 | 0.011 |
| P05161 | Ubiquitin-like protein ISG15 | ISG15 | 1.516 | 0.004 |
| Q7LGC8 | Carbohydrate sulfotransferase 3 | CHST3 | 1.479 | 0.001 |
| A0A0G2JS65 | Mucin-4 | MUC4 | 1.438 | 0.006 |
| P12273 | Prolactin-inducible protein | PIP | 1.437 | 0.044 |
| J3KNN3 | Phosphorylase kinase | PHKG2 | 0.707 | 0.001 |
| P36957 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial | DLST | 0.692 | 0.022 |
| P06276 | Cholinesterase | BCHE | 0.689 | 0.001 |
| Q02318 | Sterol 26-hydroxylase, mitochondrial | CYP27A1 | 0.684 | 0.021 |
| Q96BM9 | ADP-ribosylation factor-like protein 8A | ARL8A | 0.681 | 0.031 |
| Q9NVJ2 | ADP-ribosylation factor-like protein 8B | ARL8B | 0.681 | 0.031 |
| Q9BXB5 | Oxysterol-binding protein-related protein 10 | OSBPL10 | 0.673 | 0.036 |
| P08123 | Collagen alpha-2(I) chain | COL1A2 | 0.627 | 0.030 |
| P04003 | C4b-binding protein alpha chain | C4BPA | 0.621 | 0.038 |
| O75636 | Ficolin-3 | FCN3 | 0.617 | 0.003 |
| P16403 | Histone H1.2 | H1–2 | 0.616 | 0.006 |
| H3BSW6 | Cytoplasmic tRNA 2-thiolation protein 2 | CTU2 | 0.610 | 0.001 |
| P20851 | C4b-binding protein beta chain | C4BPB | 0.574 | 0.002 |
| P01701 | Immunoglobulin lambda variable 1–51 | IGLV1–51 | 0.572 | 0.006 |
| Q9GZP8 | Immortalization up-regulated protein | IMUP | 0.458 | 0.002 |
| A0A075B6I4 | Immunoglobulin lambda variable 10–54 | IGLV10–54 | 0.425 | 0.008 |
Processes and pathways that differentially expressed proteins are involved in based on Reactome pathways
| Pathway name | Number of entities found | Number of total entities | Proteins involved (labels) |
|---|---|---|---|
| Complement cascade | 5 | 156 | FCN3; IGLV1–51; C4BPA; C4BPB; IGLV10–54 |
| Regulation of Complement cascade | 4 | 139 | IGLV1–51; C4BPA; C4BPB; IGLV10–54 |
| Innate Immune System | 9 | 1329 | FCN3; IGLV1–51; MUC7; C4BPA; ISG15; C4BPB; MUC4; ARL8A; IGLV10–54 |
| Defective GALNT3 causes familial hyperphosphatemic tumoral calcinosis (HFTC) | 2 | 20 | MUC7; MUC4 |
| Defective GALNT12 causes colorectal cancer 1 (CRCS1) | 2 | 20 | MUC7; MUC4 |
| Defective C1GALT1C1 causes Tn polyagglutination syndrome (TNPS) | 2 | 21 | MUC7; MUC4 |
| Creation of C4 and C2 activators | 3 | 111 | FCN3; IGLV1–51; IGLV10–54 |
| Termination of O-glycan biosynthesis | 2 | 28 | MUC7; MUC4 |
| Initial triggering of complement | 3 | 120 | FCN3; IGLV1–51; IGLV10–54 |
| Immune System | 13 | 2869 | FCN3; IGLV1–51; COL1A2; MUC7; C4BPA; ISG15; C4BPB; MUC4; ARL8A; IGLV10–54 |
| Binding and Uptake of Ligands by Scavenger Receptors | 3 | 167 | IGLV1–51; COL1A2; IGLV10–54 |
| Diseases of glycosylation | 3 | 202 | MUC7; MUC4; CHST3 |
| Dectin-2 family | 2 | 65 | MUC7; MUC4 |
| Diseases of metabolism | 4 | 409 | CYP27A1; MUC7; MUC4; CHST3 |
| tRNA modification in the nucleus and cytosol | 2 | 70 | CTU2; NSUN2 |
| O-linked glycosylation of mucins | 2 | 73 | MUC7; MUC4 |
| Chondroitin sulfate/dermatan sulfate metabolism | 2 | 73 | PIP; CHST3 |
| Diseases associated with O-glycosylation of proteins | 2 | 78 | MUC7; MUC4 |
| Defective CYP27A1 causes Cerebrotendinous xanthomatosis (CTX) | 1 | 6 | CYP27A1 |
| Cell surface interactions at the vascular wall | 3 | 257 | IGLV1–51; COL1A2; IGLV10–54 |
| Classical antibody-mediated complement activation | 2 | 97 | IGLV1–51; IGLV10–54 |
| Defective CHST3 causes SEDCJD | 1 | 9 | CHST3 |
| FCGR activation | 2 | 103 | IGLV1–51; IGLV10–54 |
| Scavenging of heme from plasma | 2 | 106 | IGLV1–51; IGLV10–54 |
| Role of LAT2/NTAL/LAB on calcium mobilization | 2 | 107 | IGLV1–51; IGLV10–54 |
| SLBP independent Processing of Histone Pre-mRNAs | 1 | 10 | NCBP2 |
| SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs | 1 | 11 | NCBP2 |
| GP1b-IX-V activation signalling | 1 | 12 | COL1A2 |
| Ficolins bind to repetitive carbohydrate structures on the target cell surface | 1 | 12 | FCN3 |
Cellular components of differentially expressed proteins based on GO
| term description | observed gene count | background gene count | Proteins (labels) |
|---|---|---|---|
| extracellular region | 11 | 2505 | BCHE, C4BPA, C4BPB, COL1A2, FCN3, IGLV1–51, IGLV10–54, ISG15, MUC4, PIP, TFF3 |
| extracellular region part | 8 | 1375 | C4BPA, C4BPB, COL1A2, IGLV1–51, IGLV10–54, MUC4, PIP, TFF3 |
| extracellular space | 7 | 1134 | C4BPA, C4BPB, COL1A2, IGLV1–51, IGLV10–54, PIP, TFF |
| other organism cell | 3 | 36 | C4BPA, C4BPB, MUC7 |
| spindle midzone | 2 | 31 | ARL8A, ARL8B |