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Literature DB >> 35944140

Minimizing caging effects in murine lung microbiome studies.

Jezreel Pantaleón García¹, Robert P Dickson^2,3,4, Scott E Evans^1,5.

Abstract

Entities: Chemical

Keywords: caging effects; confounding factors; effect modifier; lung microbiome; microbiota

Mesh：

Year: 2022 PMID： 35944140 PMCID： PMC9377779 DOI： 10.1152/ajplung.00144.2022

Source DB: PubMed Journal: Am J Physiol Lung Cell Mol Physiol ISSN： 1040-0605 Impact factor: 6.011

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14 in total

1. Four types of effect modification: a classification based on directed acyclic graphs.

Authors: Tyler J VanderWeele; James M Robins
Journal: Epidemiology Date: 2007-09 Impact factor: 4.822

2. Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models.

Authors: Susan J Robertson; Paul Lemire; Heather Maughan; Ashleigh Goethel; Williams Turpin; Larbi Bedrani; David S Guttman; Kenneth Croitoru; Stephen E Girardin; Dana J Philpott
Journal: Cell Rep Date: 2019-05-07 Impact factor: 9.423

3. The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity.

Authors: Robert P Dickson; John R Erb-Downward; Nicole R Falkowski; Ellen M Hunter; Shanna L Ashley; Gary B Huffnagle
Journal: Am J Respir Crit Care Med Date: 2018-08-15 Impact factor: 21.405

4. OBIF: an omics-based interaction framework to reveal molecular drivers of synergy.

Authors: Jezreel Pantaleón García; Vikram V Kulkarni; Tanner C Reese; Shradha Wali; Saima J Wase; Jiexin Zhang; Ratnakar Singh; Mauricio S Caetano; Humam Kadara; Seyed Javad Moghaddam; Faye M Johnson; Jing Wang; Yongxing Wang; Scott E Evans
Journal: NAR Genom Bioinform Date: 2022-04-05

Review 5. Reporting guidelines for human microbiome research: the STORMS checklist.

Authors: Curtis Huttenhower; Jennifer B Dowd; Heidi E Jones; Levi Waldron; Chloe Mirzayi; Audrey Renson; Fatima Zohra; Shaimaa Elsafoury; Ludwig Geistlinger; Lora J Kasselman; Kelly Eckenrode; Janneke van de Wijgert; Amy Loughman; Francine Z Marques; David A MacIntyre; Manimozhiyan Arumugam; Rimsha Azhar; Francesco Beghini; Kirk Bergstrom; Ami Bhatt; Jordan E Bisanz; Jonathan Braun; Hector Corrada Bravo; Gregory A Buck; Frederic Bushman; David Casero; Gerard Clarke; Maria Carmen Collado; Paul D Cotter; John F Cryan; Ryan T Demmer; Suzanne Devkota; Eran Elinav; Juan S Escobar; Jennifer Fettweis; Robert D Finn; Anthony A Fodor; Sofia Forslund; Andre Franke; Cesare Furlanello; Jack Gilbert; Elizabeth Grice; Benjamin Haibe-Kains; Scott Handley; Pamela Herd; Susan Holmes; Jonathan P Jacobs; Lisa Karstens; Rob Knight; Dan Knights; Omry Koren; Douglas S Kwon; Morgan Langille; Brianna Lindsay; Dermot McGovern; Alice C McHardy; Shannon McWeeney; Noel T Mueller; Luigi Nezi; Matthew Olm; Noah Palm; Edoardo Pasolli; Jeroen Raes; Matthew R Redinbo; Malte Rühlemann; R Balfour Sartor; Patrick D Schloss; Lynn Schriml; Eran Segal; Michelle Shardell; Thomas Sharpton; Ekaterina Smirnova; Harry Sokol; Justin L Sonnenburg; Sujatha Srinivasan; Louise B Thingholm; Peter J Turnbaugh; Vaibhav Upadhyay; Ramona L Walls; Paul Wilmes; Takuji Yamada; Georg Zeller; Mingyu Zhang; Ni Zhao; Liping Zhao; Wenjun Bao; Aedin Culhane; Viswanath Devanarayan; Joaquin Dopazo; Xiaohui Fan; Matthias Fischer; Wendell Jones; Rebecca Kusko; Christopher E Mason; Tim R Mercer; Susanna-Assunta Sansone; Andreas Scherer; Leming Shi; Shraddha Thakkar; Weida Tong; Russ Wolfinger; Christopher Hunter; Nicola Segata
Journal: Nat Med Date: 2021-11-17 Impact factor: 87.241

Minimizing caging effects in murine lung microbiome studies.

1. Four types of effect modification: a classification based on directed acyclic graphs.

2. Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models.

3. The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity.

4. OBIF: an omics-based interaction framework to reveal molecular drivers of synergy.

Review 5. Reporting guidelines for human microbiome research: the STORMS checklist.

6. Synergistic TLR2/6 and TLR9 activation protects mice against lethal influenza pneumonia.

7. Selective Modulation of the Pulmonary Innate Immune Response Does Not Change Lung Microbiota in Healthy Mice.

8. Toll-like receptors: shapers of the pulmonary microbiome?

9. Reply to Yasuma et al.: Response of Lung Microbiota to Changes of Pulmonary Innate Immunity under Healthy Conditions.

10. Toll-like receptors, environmental caging, and lung dysbiosis.

1. Reply to Pantaleón García et al.