Literature DB >> 35937997

Identification of Crucial Gene Modules Related to the Efficiency of Anti-PD-1/PD-L1 Therapy and Comprehensive Analyses of a Novel Signature Based on These Modules.

Wei Wang1,2, Dong Dong1,2, Liang Chen1, Heng Wang1,2, Bo Bi3, Tianyi Liu1.   

Abstract

Biomarker development for clinical checkpoint inhibition is still in its early stages. It is critical to determine the cause of the lack of a long-term response in patients after immune checkpoint blockade (ICB) treatment and to develop composite biomarkers or signatures to improve personalized approaches. Three modules that were significantly correlated with the immunotherapeutic response were identified. Stimulatory pathways of cellular immunity, extracellular matrix formation-related pathways, and ATP metabolism-related pathways were enriched. Two distinct transcriptional subtypes were determined. Tumor microenvironment (TME) characteristics were highly correlated with "hot" and "cold" tumors. The ICB score was significantly correlated with clinical characteristics including age, Breslow depth, Clerk level, AJCC stage, and T stage. Meanwhile, a low ICB score is characterized by increased activation of immunity, a higher level of immune infiltration, and immune molecule expression. The ICB score showed a robust ability to predict melanoma prognosis in the discovery, internal validation, and external validation cohorts. In addition, a low ICB score was linked to a higher CR/PR rate in the immunotherapeutic cohort. The ICB score could reflect the pre-existing immune features and the expression pattern of "Cold" versus "Hot" tumors in melanoma patients. Thus, it has the potential to serve as a reliable predictor of melanoma prognosis and response to ICB therapy.
Copyright © 2022 Wang, Dong, Chen, Wang, Bi and Liu.

Entities:  

Keywords:  TCGA; immunotherapy; melanoma; signature; tumor microenvironment

Year:  2022        PMID: 35937997      PMCID: PMC9354784          DOI: 10.3389/fgene.2022.893380

Source DB:  PubMed          Journal:  Front Genet        ISSN: 1664-8021            Impact factor:   4.772


  69 in total

Review 1.  Understanding the tumor immune microenvironment (TIME) for effective therapy.

Authors:  Mikhail Binnewies; Edward W Roberts; Kelly Kersten; Vincent Chan; Douglas F Fearon; Miriam Merad; Lisa M Coussens; Dmitry I Gabrilovich; Suzanne Ostrand-Rosenberg; Catherine C Hedrick; Robert H Vonderheide; Mikael J Pittet; Rakesh K Jain; Weiping Zou; T Kevin Howcroft; Elisa C Woodhouse; Robert A Weinberg; Matthew F Krummel
Journal:  Nat Med       Date:  2018-04-23       Impact factor: 53.440

2.  Genomic Classification of Cutaneous Melanoma.

Authors: 
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

3.  Comparison of Biomarker Modalities for Predicting Response to PD-1/PD-L1 Checkpoint Blockade: A Systematic Review and Meta-analysis.

Authors:  Steve Lu; Julie E Stein; David L Rimm; Daphne W Wang; J Michael Bell; Douglas B Johnson; Jeffrey A Sosman; Kurt A Schalper; Robert A Anders; Hao Wang; Clifford Hoyt; Drew M Pardoll; Ludmila Danilova; Janis M Taube
Journal:  JAMA Oncol       Date:  2019-08-01       Impact factor: 31.777

4.  Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data.

Authors:  Julien Racle; Kaat de Jonge; Petra Baumgaertner; Daniel E Speiser; David Gfeller
Journal:  Elife       Date:  2017-11-13       Impact factor: 8.140

5.  TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells.

Authors:  Sanjeev Mariathasan; Shannon J Turley; Dorothee Nickles; Alessandra Castiglioni; Kobe Yuen; Yulei Wang; Edward E Kadel; Hartmut Koeppen; Jillian L Astarita; Rafael Cubas; Suchit Jhunjhunwala; Romain Banchereau; Yagai Yang; Yinghui Guan; Cecile Chalouni; James Ziai; Yasin Şenbabaoğlu; Stephen Santoro; Daniel Sheinson; Jeffrey Hung; Jennifer M Giltnane; Andrew A Pierce; Kathryn Mesh; Steve Lianoglou; Johannes Riegler; Richard A D Carano; Pontus Eriksson; Mattias Höglund; Loan Somarriba; Daniel L Halligan; Michiel S van der Heijden; Yohann Loriot; Jonathan E Rosenberg; Lawrence Fong; Ira Mellman; Daniel S Chen; Marjorie Green; Christina Derleth; Gregg D Fine; Priti S Hegde; Richard Bourgon; Thomas Powles
Journal:  Nature       Date:  2018-02-14       Impact factor: 49.962

6.  9-Gene Signature Correlated With CD8+ T Cell Infiltration Activated by IFN-γ: A Biomarker of Immune Checkpoint Therapy Response in Melanoma.

Authors:  Kexin Yan; Yuxiu Lu; Zhangyong Yan; Yutao Wang
Journal:  Front Immunol       Date:  2021-06-17       Impact factor: 7.561

7.  Genomic copy number alterations in clear cell renal carcinoma: associations with case characteristics and mechanisms of VHL gene inactivation.

Authors:  L E Moore; E Jaeger; M L Nickerson; P Brennan; S De Vries; R Roy; J Toro; H Li; S Karami; P Lenz; D Zaridze; V Janout; V Bencko; M Navratilova; N Szeszenia-Dabrowska; D Mates; W M Linehan; M Merino; J Simko; R Pfeiffer; P Boffetta; S Hewitt; N Rothman; W-H Chow; F M Waldman
Journal:  Oncogenesis       Date:  2012-06-25       Impact factor: 7.485

8.  A case for the use of receiver operating characteristic analysis of potential clinical efficacy biomarkers in advanced renal cell carcinoma.

Authors:  Patricia A English; J Andrew Williams; Jean-François Martini; Robert J Motzer; Olga Valota; Richard E Buller
Journal:  Future Oncol       Date:  2015-12-17       Impact factor: 3.404

Review 9.  Role of the tumor microenvironment in PD-L1/PD-1-mediated tumor immune escape.

Authors:  Xianjie Jiang; Jie Wang; Xiangying Deng; Fang Xiong; Junshang Ge; Bo Xiang; Xu Wu; Jian Ma; Ming Zhou; Xiaoling Li; Yong Li; Guiyuan Li; Wei Xiong; Can Guo; Zhaoyang Zeng
Journal:  Mol Cancer       Date:  2019-01-15       Impact factor: 27.401

10.  Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends of Cancer Research TMB Harmonization Project.

Authors:  Diana M Merino; Lisa M McShane; David Fabrizio; Vincent Funari; Shu-Jen Chen; James R White; Paul Wenz; Jonathan Baden; J Carl Barrett; Ruchi Chaudhary; Li Chen; Wangjuh Sting Chen; Jen-Hao Cheng; Dinesh Cyanam; Jennifer S Dickey; Vikas Gupta; Matthew Hellmann; Elena Helman; Yali Li; Joerg Maas; Arnaud Papin; Rajesh Patidar; Katie J Quinn; Naiyer Rizvi; Hongseok Tae; Christine Ward; Mingchao Xie; Ahmet Zehir; Chen Zhao; Manfred Dietel; Albrecht Stenzinger; Mark Stewart; Jeff Allen
Journal:  J Immunother Cancer       Date:  2020-03       Impact factor: 13.751

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