Literature DB >> 35936994

Assembly and Curation of Lists of Per- and Polyfluoroalkyl Substances (PFAS) to Support Environmental Science Research.

Antony J Williams1, Linda G T Gaines2, Christopher M Grulke1, Charles N Lowe1, Gabriel F B Sinclair3, Vicente Samano4, Inthirany Thillainadarajah4, Bryan Meyer4, Grace Patlewicz1, Ann M Richard1.   

Abstract

Per- and polyfluoroalkyl substances (PFAS) are a class of man-made chemicals of global concern for many health and regulatory agencies due to their widespread use and persistence in the environment (in soil, air, and water), bioaccumulation, and toxicity. This concern has catalyzed a need to aggregate data to support research efforts that can, in turn, inform regulatory and statutory actions. An ongoing challenge regarding PFAS has been the shifting definition of what qualifies a substance to be a member of the PFAS class. There is no single definition for a PFAS, but various attempts have been made to utilize substructural definitions that either encompass broad working scopes or satisfy narrower regulatory guidelines. Depending on the size and specificity of PFAS substructural filters applied to the U.S. Environmental Protection Agency (EPA) DSSTox database, currently exceeding 900,000 unique substances, PFAS substructure-defined space can span hundreds to tens of thousands of compounds. This manuscript reports on the curation of PFAS chemicals and assembly of lists that have been made publicly available to the community via the EPA's CompTox Chemicals Dashboard. Creation of these PFAS lists required the harvesting of data from EPA and online databases, peer-reviewed publications, and regulatory documents. These data have been extracted and manually curated, annotated with structures, and made available to the community in the form of lists defined by structure filters, as well as lists comprising non-structurable PFAS, such as polymers and complex mixtures. These lists, along with their associated linkages to predicted and measured data, are fueling PFAS research efforts within the EPA and are serving as a valuable resource to the international scientific community.

Entities:  

Keywords:  cheminformatics; computational toxicology; environmental chemistry; pfas (perfluorinated alkylated substances); web-based information

Year:  2022        PMID: 35936994      PMCID: PMC9350880          DOI: 10.3389/fenvs.2022.850019

Source DB:  PubMed          Journal:  Front Environ Sci        ISSN: 2296-665X


  15 in total

1.  Update on EPA's ToxCast program: providing high throughput decision support tools for chemical risk management.

Authors:  Robert Kavlock; Kelly Chandler; Keith Houck; Sid Hunter; Richard Judson; Nicole Kleinstreuer; Thomas Knudsen; Matt Martin; Stephanie Padilla; David Reif; Ann Richard; Daniel Rotroff; Nisha Sipes; David Dix
Journal:  Chem Res Toxicol       Date:  2012-05-15       Impact factor: 3.739

2.  Chemical name to structure: OPSIN, an open source solution.

Authors:  Daniel M Lowe; Peter T Corbett; Peter Murray-Rust; Robert C Glen
Journal:  J Chem Inf Model       Date:  2011-03-09       Impact factor: 4.956

3.  Using prepared mixtures of ToxCast chemicals to evaluate non-targeted analysis (NTA) method performance.

Authors:  Jon R Sobus; Jarod N Grossman; Alex Chao; Randolph Singh; Antony J Williams; Christopher M Grulke; Ann M Richard; Seth R Newton; Andrew D McEachran; Elin M Ulrich
Journal:  Anal Bioanal Chem       Date:  2019-01-05       Impact factor: 4.142

4.  Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research.

Authors:  Denis Fourches; Eugene Muratov; Alexander Tropsha
Journal:  J Chem Inf Model       Date:  2010-07-26       Impact factor: 4.956

5.  Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-Friendly SMILES Structure-based Approach.

Authors:  Ann M Richard; Hannah Hidle; Grace Patlewicz; Antony J Williams
Journal:  Front Environ Sci       Date:  2022-03-24

6.  An overview of the uses of per- and polyfluoroalkyl substances (PFAS).

Authors:  Juliane Glüge; Martin Scheringer; Ian T Cousins; Jamie C DeWitt; Gretta Goldenman; Dorte Herzke; Rainer Lohmann; Carla A Ng; Xenia Trier; Zhanyun Wang
Journal:  Environ Sci Process Impacts       Date:  2020-10-30       Impact factor: 4.238

7.  Enabling High-Throughput Searches for Multiple Chemical Data Using the U.S.-EPA CompTox Chemicals Dashboard.

Authors:  Charles N Lowe; Antony J Williams
Journal:  J Chem Inf Model       Date:  2021-01-22       Impact factor: 4.956

Review 8.  Perfluoroalkyl and polyfluoroalkyl substances in the environment: terminology, classification, and origins.

Authors:  Robert C Buck; James Franklin; Urs Berger; Jason M Conder; Ian T Cousins; Pim de Voogt; Allan Astrup Jensen; Kurunthachalam Kannan; Scott A Mabury; Stefan P J van Leeuwen
Journal:  Integr Environ Assess Manag       Date:  2011-10       Impact factor: 2.992

9.  ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.

Authors:  Yannick Djoumbou Feunang; Roman Eisner; Craig Knox; Leonid Chepelev; Janna Hastings; Gareth Owen; Eoin Fahy; Christoph Steinbeck; Shankar Subramanian; Evan Bolton; Russell Greiner; David S Wishart
Journal:  J Cheminform       Date:  2016-11-04       Impact factor: 5.514

10.  EPA's DSSTox database: History of development of a curated chemistry resource supporting computational toxicology research.

Authors:  Christopher M Grulke; Antony J Williams; Inthirany Thillanadarajah; Ann M Richard
Journal:  Comput Toxicol       Date:  2019-11-01
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