Literature DB >> 35935278

Biclustering of medical monitoring data using a nonparametric hierarchical Bayesian model.

Yan Ren1, Siva Sivaganesan2, Mekibib Altaye3,4, Raouf S Amin4,5, Rhonda D Szczesniak3,4,5.   

Abstract

In longitudinal studies in which a medical device is used to monitor outcome repeatedly and frequently on the same patients over a prespecified duration of time, two clustering goals can arise. One goal is to assess the degree of heterogeneity among patient profiles. A second yet equally important goal unique to such studies is to determine frequency and duration of monitoring sufficient to identify longitudinal changes. Considering these goals jointly would identify clusters of patients who share similar patterns over time and characterize temporal stability within each cluster. We use a biclustering approach, allowing simultaneous clustering of observations at both patient and time levels and using a nonparametric hierarchical Bayesian model. Because clustering units at the time level (i.e., time points) are ordered and hence unexchangeable, we utilize a multivariate Dirichlet process mixture model by specifying a Dirichlet process prior at the patient level whose base measure employs change points at the time level to achieve the desired joint clustering. We consider structured covariance between consecutive time points and assess model performance through simulation studies. We apply the model to data on 24-hr ambulatory blood pressure monitoring and examine the relationship between diastolic blood pressure and pediatric obstructive sleep apnoea.

Entities:  

Keywords:  Markov chain Monte Carlo; biostatistics; clustering; longitudinal data; multivariate analysis; nonparametric methods

Year:  2020        PMID: 35935278      PMCID: PMC9355390          DOI: 10.1002/sta4.279

Source DB:  PubMed          Journal:  Stat (Int Stat Inst)        ISSN: 2049-1573


  12 in total

1.  Coupled two-way clustering analysis of gene microarray data.

Authors:  G Getz; E Levine; E Domany
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Bayesian infinite mixture model based clustering of gene expression profiles.

Authors:  Mario Medvedovic; Siva Sivaganesan
Journal:  Bioinformatics       Date:  2002-09       Impact factor: 6.937

3.  Sleep apnea and cardiovascular disease: an American Heart Association/american College Of Cardiology Foundation Scientific Statement from the American Heart Association Council for High Blood Pressure Research Professional Education Committee, Council on Clinical Cardiology, Stroke Council, and Council On Cardiovascular Nursing. In collaboration with the National Heart, Lung, and Blood Institute National Center on Sleep Disorders Research (National Institutes of Health).

Authors:  Virend K Somers; David P White; Raouf Amin; William T Abraham; Fernando Costa; Antonio Culebras; Stephen Daniels; John S Floras; Carl E Hunt; Lyle J Olson; Thomas G Pickering; Richard Russell; Mary Woo; Terry Young
Journal:  Circulation       Date:  2008-08-25       Impact factor: 29.690

4.  Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm.

Authors:  Sara C Madeira; Miguel C Teixeira; Isabel Sá-Correia; Arlindo L Oliveira
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Jan-Mar       Impact factor: 3.710

5.  Baroreflex sensitivity after adenotonsillectomy in children with obstructive sleep apnea during wakefulness and sleep.

Authors:  Joseph A Crisalli; Keith McConnell; Rhonda D Vandyke; Matthew C Fenchel; Virend K Somers; A Shamszumann; Barbara Chini; Stephen R Daniels; Raouf S Amin
Journal:  Sleep       Date:  2012-10-01       Impact factor: 5.849

6.  Semiparametric Mixed Models for Nested Repeated Measures Applied to Ambulatory Blood Pressure Monitoring Data.

Authors:  Rhonda D Szczesniak; Dan Li; Raouf S Amin
Journal:  J Mod Appl Stat Methods       Date:  2016

7.  A semi-parametric Bayesian model for unsupervised differential co-expression analysis.

Authors:  Johannes M Freudenberg; Siva Sivaganesan; Michael Wagner; Mario Medvedovic
Journal:  BMC Bioinformatics       Date:  2010-05-07       Impact factor: 3.169

8.  Activity-adjusted 24-hour ambulatory blood pressure and cardiac remodeling in children with sleep disordered breathing.

Authors:  Raouf Amin; Virend K Somers; Keith McConnell; Paul Willging; Charles Myer; Marc Sherman; Gary McPhail; Ashley Morgenthal; Matthew Fenchel; Judy Bean; Thomas Kimball; Stephen Daniels
Journal:  Hypertension       Date:  2007-12-10       Impact factor: 10.190

9.  A Nonparametric Bayesian Model for Local Clustering with Application to Proteomics.

Authors:  Juhee Lee; Peter Müller; Yitan Zhu; Yuan Ji
Journal:  J Am Stat Assoc       Date:  2013-01-01       Impact factor: 5.033

10.  Parallel Markov chain Monte Carlo - bridging the gap to high-performance Bayesian computation in animal breeding and genetics.

Authors:  Xiao-Lin Wu; Chuanyu Sun; Timothy M Beissinger; Guilherme Jm Rosa; Kent A Weigel; Natalia de Leon Gatti; Daniel Gianola
Journal:  Genet Sel Evol       Date:  2012-09-25       Impact factor: 4.297

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