Literature DB >> 35933452

Analysis of cellular kinetic models suggest that physiologically based model parameters may be inherently, practically unidentifiable.

Liam V Brown1,2, Mark C Coles3, Mark McConnell4,5, Alexander V Ratushny4, Eamonn A Gaffney6.   

Abstract

Physiologically-based pharmacokinetic and cellular kinetic models are used extensively to predict concentration profiles of drugs or adoptively transferred cells in patients and laboratory animals. Models are fit to data by the numerical optimisation of appropriate parameter values. When quantities such as the area under the curve are all that is desired, only a close qualitative fit to data is required. When the biological interpretation of the model that produced the fit is important, an assessment of uncertainties is often also warranted. Often, a goal of fitting PBPK models to data is to estimate parameter values, which can then be used to assess characteristics of the fit system or applied to inform new modelling efforts and extrapolation, to inform a prediction under new conditions. However, the parameters that yield a particular model output may not necessarily be unique, in which case the parameters are said to be unidentifiable. We show that the parameters in three published physiologically-based pharmacokinetic models are practically (deterministically) unidentifiable and that it is challenging to assess the associated parameter uncertainty with simple curve fitting techniques. This result could affect many physiologically-based pharmacokinetic models, and we advocate more widespread use of thorough techniques and analyses to address these issues, such as established Markov Chain Monte Carlo and Bayesian methodologies. Greater handling and reporting of uncertainty and identifiability of fit parameters would directly and positively impact interpretation and translation for physiologically-based model applications, enhancing their capacity to inform new model development efforts and extrapolation in support of future clinical decision-making.
© 2022. The Author(s).

Entities:  

Keywords:  Identifiability; Parameter; Uncertainty

Year:  2022        PMID: 35933452     DOI: 10.1007/s10928-022-09819-7

Source DB:  PubMed          Journal:  J Pharmacokinet Pharmacodyn        ISSN: 1567-567X            Impact factor:   2.410


  33 in total

1.  Towards a platform PBPK model to characterize the plasma and tissue disposition of monoclonal antibodies in preclinical species and human.

Authors:  Dhaval K Shah; Alison M Betts
Journal:  J Pharmacokinet Pharmacodyn       Date:  2011-12-06       Impact factor: 2.745

2.  Extracting falsifiable predictions from sloppy models.

Authors:  Ryan N Gutenkunst; Fergal P Casey; Joshua J Waterfall; Christopher R Myers; James P Sethna
Journal:  Ann N Y Acad Sci       Date:  2007-10-09       Impact factor: 5.691

Review 3.  Perspective: Sloppiness and emergent theories in physics, biology, and beyond.

Authors:  Mark K Transtrum; Benjamin B Machta; Kevin S Brown; Bryan C Daniels; Christopher R Myers; James P Sethna
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

4.  The input-output relationship approach to structural identifiability analysis.

Authors:  Daniel J Bearup; Neil D Evans; Michael J Chappell
Journal:  Comput Methods Programs Biomed       Date:  2012-12-08       Impact factor: 5.428

5.  Extending existing structural identifiability analysis methods to mixed-effects models.

Authors:  David L I Janzén; Mats Jirstrand; Michael J Chappell; Neil D Evans
Journal:  Math Biosci       Date:  2017-10-26       Impact factor: 2.144

6.  Physiologically based kinetic model of effector cell biodistribution in mammals: implications for adoptive immunotherapy.

Authors:  H Zhu; R J Melder; L T Baxter; R K Jain
Journal:  Cancer Res       Date:  1996-08-15       Impact factor: 12.701

Review 7.  Clinical significance of organic anion transporting polypeptides (OATPs) in drug disposition: their roles in hepatic clearance and intestinal absorption.

Authors:  Yoshihisa Shitara; Kazuya Maeda; Kazuaki Ikejiri; Kenta Yoshida; Toshiharu Horie; Yuichi Sugiyama
Journal:  Biopharm Drug Dispos       Date:  2013-01       Impact factor: 1.627

8.  Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach.

Authors:  Atsushi Fukushima; Miyako Kusano; Henning Redestig; Masanori Arita; Kazuki Saito
Journal:  BMC Syst Biol       Date:  2011-01-01

Review 9.  Physiologically Based Pharmacokinetic Model Qualification and Reporting Procedures for Regulatory Submissions: A Consortium Perspective.

Authors:  Mohamad Shebley; Punam Sandhu; Arian Emami Riedmaier; Masoud Jamei; Rangaraj Narayanan; Aarti Patel; Sheila Annie Peters; Venkatesh Pilla Reddy; Ming Zheng; Loeckie de Zwart; Maud Beneton; Francois Bouzom; Jun Chen; Yuan Chen; Yumi Cleary; Christiane Collins; Gemma L Dickinson; Nassim Djebli; Heidi J Einolf; Iain Gardner; Felix Huth; Faraz Kazmi; Feras Khalil; Jing Lin; Aleksandrs Odinecs; Chirag Patel; Haojing Rong; Edgar Schuck; Pradeep Sharma; Shu-Pei Wu; Yang Xu; Shinji Yamazaki; Kenta Yoshida; Malcolm Rowland
Journal:  Clin Pharmacol Ther       Date:  2018-02-02       Impact factor: 6.875

10.  Development of a quantitative relationship between CAR-affinity, antigen abundance, tumor cell depletion and CAR-T cell expansion using a multiscale systems PK-PD model.

Authors:  Aman P Singh; Xirong Zheng; Xiefan Lin-Schmidt; Wenbo Chen; Thomas J Carpenter; Alice Zong; Weirong Wang; Donald L Heald
Journal:  MAbs       Date:  2020 Jan-Dec       Impact factor: 5.857

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