Literature DB >> 35932776

Corticogenesis across species at single-cell resolution.

Seon Hye E Park1, Ana K Ortiz1, Genevieve Konopka1.   

Abstract

The neocortex (or pallium) consists of diverse cell types that are organized in a highly species-specific manner under strict spatiotemporal control during development. Many of the cell types are present transiently throughout development but contribute to permanent species-specific cortical features that are acquired through evolution. Therefore, capturing cell type-specific biological information has always been an important quest in the field of neurodevelopment. The progress in achieving fine cellular resolution has been slow due to technical challenges. However, with recent advancements in single-cell and multi-omics technologies, many laboratories have begun to successfully interrogate cellular and molecular mechanisms driving corticogenesis at single-cell resolution. In this review, we provide summarized results from many primary publications and several in-depth review articles that utilize or address single-cell genomics techniques to understand important topics, such as cellular and molecular mechanisms governing cortical progenitor proliferation, cell lineage progression, neuronal specification, and arealization, across multiple gyrencephalic (i.e., human and non-human primates) and lissencephalic species (i.e., mouse, reptiles, and songbirds). We also examine findings from recent studies involving epigenomic and posttranscriptional regulation of corticogenesis. In the discussion section, we provide our insights on the challenges the field currently faces as well as promising future applications of single cell technologies.
© 2022 Wiley Periodicals LLC.

Entities:  

Keywords:  basal radial glia; cortex; evolution; genomics; single cell

Mesh:

Year:  2022        PMID: 35932776      PMCID: PMC9481703          DOI: 10.1002/dneu.22896

Source DB:  PubMed          Journal:  Dev Neurobiol        ISSN: 1932-8451            Impact factor:   3.102


  80 in total

Review 1.  The evolution of cortical development: the synapsid-diapsid divergence.

Authors:  Andre M Goffinet
Journal:  Development       Date:  2017-11-15       Impact factor: 6.868

Review 2.  Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.

Authors:  Sophia K Longo; Margaret G Guo; Andrew L Ji; Paul A Khavari
Journal:  Nat Rev Genet       Date:  2021-06-18       Impact factor: 53.242

3.  Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.

Authors:  Naomi Habib; Yinqing Li; Matthias Heidenreich; Lukasz Swiech; Inbal Avraham-Davidi; John J Trombetta; Cynthia Hession; Feng Zhang; Aviv Regev
Journal:  Science       Date:  2016-07-28       Impact factor: 47.728

4.  Temporal controls over inter-areal cortical projection neuron fate diversity.

Authors:  Ugo Tomasello; Julien Prados; Esther Klingler; Justus M Kebschull; Alessandro Contestabile; Gregorio L Galiñanes; Sabine Fièvre; Antonio Santinha; Randall Platt; Daniel Huber; Alexandre Dayer; Camilla Bellone; Denis Jabaudon
Journal:  Nature       Date:  2021-11-09       Impact factor: 49.962

Review 5.  From Cell Types to an Integrated Understanding of Brain Evolution: The Case of the Cerebral Cortex.

Authors:  Maria Antonietta Tosches
Journal:  Annu Rev Cell Dev Biol       Date:  2021-08-20       Impact factor: 13.827

6.  Regulation of prefrontal patterning and connectivity by retinoic acid.

Authors:  Mikihito Shibata; Kartik Pattabiraman; Belen Lorente-Galdos; David Andrijevic; Suel-Kee Kim; Navjot Kaur; Sydney K Muchnik; Xiaojun Xing; Gabriel Santpere; Andre M M Sousa; Nenad Sestan
Journal:  Nature       Date:  2021-10-01       Impact factor: 69.504

7.  Organoid single-cell genomic atlas uncovers human-specific features of brain development.

Authors:  Sabina Kanton; Michael James Boyle; Zhisong He; Malgorzata Santel; Anne Weigert; Fátima Sanchís-Calleja; Patricia Guijarro; Leila Sidow; Jonas Simon Fleck; Dingding Han; Zhengzong Qian; Michael Heide; Wieland B Huttner; Philipp Khaitovich; Svante Pääbo; Barbara Treutlein; J Gray Camp
Journal:  Nature       Date:  2019-10-16       Impact factor: 49.962

8.  Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.

Authors:  J Gray Camp; Farhath Badsha; Marta Florio; Sabina Kanton; Tobias Gerber; Michaela Wilsch-Bräuninger; Eric Lewitus; Alex Sykes; Wulf Hevers; Madeline Lancaster; Juergen A Knoblich; Robert Lachmann; Svante Pääbo; Wieland B Huttner; Barbara Treutlein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-07       Impact factor: 11.205

9.  Molecular logic of cellular diversification in the mouse cerebral cortex.

Authors:  Daniela J Di Bella; Ehsan Habibi; Robert R Stickels; Gabriele Scalia; Juliana Brown; Payman Yadollahpour; Sung Min Yang; Catherine Abbate; Tommaso Biancalani; Evan Z Macosko; Fei Chen; Aviv Regev; Paola Arlotta
Journal:  Nature       Date:  2021-06-23       Impact factor: 49.962

10.  A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.

Authors:  Blue B Lake; Simone Codeluppi; Yun C Yung; Derek Gao; Jerold Chun; Peter V Kharchenko; Sten Linnarsson; Kun Zhang
Journal:  Sci Rep       Date:  2017-07-20       Impact factor: 4.379

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